Re: [mpich-discuss] Error building mpich-3.1.2 on Solaris 10 withgcc-4.9.0

6 Sep 2014


      Hi,
...
Thanks, Siegmar.  Are you seeing some errors with âmake t
testingâ or are all tests failing?  On some platforms, s
some tests take longer and hence show up as âtimeoutsâ, but
they are not really hanging.  But the number of such tests
should be small.
I see some bus errors on Solaris 10 Sparc. I attached the log
files for both Solaris 10 Sparc and x86_64, so that you can
see yourself the results.

Kind regards

Siegmar
...
Weâll look into the C++ issues.  We are trying to get a m
machine setup locally to test this configuration out.
Regards,
â Pavan
On Sep 6, 2014, at 2:24 AM, Siegmar Gross 
<[email protected]> wrote:
...
Hi,
...
Could you configure with --disable-cxx to see if you can continue?
I can build MPICH with gcc-4.9.0 without C++ bindings on Solaris 10
Sparc and x86_64.
tyr small_prog 114 mpichversion
MPICH Version:          3.2a1
MPICH Release date:     Fri Sep  5 00:00:35 CDT 2014
MPICH Device:           ch3:nemesis
MPICH configure:        --prefix=/usr/local/mpich-3.2_64_gcc
 --libdir=/usr/local/mpich-3.2_64_gcc/lib64
 --includedir=/usr/local/mpich-3.2_64_gcc/include64
 CC=gcc CXX=g++ F77=gfortran FC=gfortran CFLAGS=-m64 CXXFLAGS=-m64
 FFLAGS=-m64 FCFLAGS=-m64 LDFLAGS=-m64
 -L/usr/lib/sparcv9 -Wl,-rpath /usr/lib/sparcv9 --enable-f77 --enable-fc
 --disable-cxx --enable-romio --enable-debuginfo --enable-smpcoll
 --enable-threads=runtime --with-thread-package=posix --enable-shared
MPICH CC:       gcc -m64   -O2
MPICH CXX:      no -m64 
MPICH F77:      gfortran -m64  -O2
MPICH FC:       gfortran -m64  -O2
tyr small_prog 115 mpicc init_finalize.c
tyr small_prog 116 mpiexec -np 1 a.out
Hello!
tyr small_prog 117 mpicc thread_support.c 
tyr small_prog 118 mpiexec -np 1 a.out
I have requested MPI_THREAD_MULTIPLE in "MPI_Init_thread ()" and
it provides MPI_THREAD_MULTIPLE
"MPI_Query_thread ()" returned MPI_THREAD_MULTIPLE:
       Many threads are supported and any thread may call
       MPI functions at any time.
"MPI_Is_thread_main ()" returned: "true".
tyr small_prog 119
I have attached my config and log files for my Solaris Sparc version
(even "make check" works fine). However, I get errors with "make
testing" (APPLICATION TIMED OUT). Generally, I only use "make check",
so perhaps I have to do it in a different way (e.g., running the test
as normal user and not as root). I stopped this test.
By the way, you can avoid the warning about X11/Xutil.h, if you include
X11/Xlib.h before this header file.
tyr mpich-3.2-SunOS.sparc.64_gcc_disable-cxx 135 more 
/usr/include/X11/Xutil.h
/* $TOG: Xutil.h /main/45 1998/02/06 18:03:35 kaleb $ */
...
/* You must include <X11/Xlib.h> before including this file */
...
I would be grateful, if you can fix the problem for C++ bindings.
C++ bindings are available in my Sun C 5.12 version of MPICH.
tyr fd1026 101 mpichversion 
MPICH Version:          3.2a1
MPICH Release date:     Fri Sep  5 00:00:35 CDT 2014
MPICH Device:           ch3:nemesis
MPICH configure:        --prefix=/usr/local/mpich-3.2_64_cc
 --libdir=/usr/local/mpich-3.2_64_cc/lib64
 --includedir=/usr/local/mpich-3.2_64_cc/include64
 CC=cc CXX=CC F77=f77 FC=f95 CFLAGS=-m64 CXXFLAGS=-m64
 FFLAGS=-m64 FCFLAGS=-m64 LDFLAGS=-m64
 -L/usr/lib/sparcv9 -R/usr/lib/sparcv9 --enable-f77 --enable-fc
 --enable-cxx --enable-romio --enable-debuginfo --enable-smpcoll
 --enable-threads=runtime --with-thread-package=posix --enable-shared
MPICH CC:       cc -m64   -O2
MPICH CXX:      CC -m64  -O2
MPICH F77:      f77 -m64 
MPICH FC:       f95 -m64  -O2
tyr fd1026 102
Kind regards and thank you very much for any help in advance
Siegmar
...
--Junchao Zhang
On Fri, Sep 5, 2014 at 2:26 PM, Siegmar Gross <
[email protected]> wrote:
...
Hi,
thank you very much for all answers to my problems building
MPICH on Solaris with gcc-4.9.0. Today I tried to build
mpich-master-v3.2a1. Unfortunately I have had the same problems.
...
1) For the linking errors you should provide the full build log but it
could just be an issue with the order of arguments passed to Solaris ld,
or
if you compiled gcc to use GNU ld, the same issue might occur if the
configure script assumes Solaris => Solaris ld.
I have attached the files in the archive
mpich-3.2-SunOS.sparc.64_gcc_only-m64.tar.gz
...
2) I keep this sticky note on my wiki:
"Compiler or options invalid for pre-UNIX 03 X/Open applications and
pre-2001 POSIX applications"
/usr/gcc/4.6/lib/gcc/i386-pc-solaris2.11/4.6.3/include-fixed/sys/feature_tests.h
:362:2:
...
...
error: #error "Compiler or options invalid for pre-UNIX 03 X/Open
applications
and pre-2001 POSIX applications"
Conflict of standards between _XOPEN_SOURCE and C99 extensions.
#if defined(_STDC_C99) && (defined(__XOPEN_OR_POSIX) && !defined(_XPG6))
As GCC standards do not match ANSI/ISO/POSIX standards strictly you need
to
specify the standard you want to comply with.
Usually adding -D_XOPEN_SOURCE=500 (or 600) and/or -D__EXTENSIONS__ to
your
compiler flags is a good start.
It was a little bit more complicated to get this one as far as
the build with just "CFLAGS=-m64". Adding "-D__EXTENSIONS__" broke
the build process. Adding "-D_XOPEN_SOURCE=500" didn't solve the
problem, because Solaris expects "-D_XOPEN_SOURCE=600". Using this
flag wasn't helpful, because you redefined it to "500" in file
mpich-master-v3.2a1/src/mpi/romio/adio/common/ad_read.c, so that I
had to add "-D_STDC_C99" to keep "600". Another problem came from
file /usr/include/sys/statvfs.h ("FSTYPSZ" wasn't defined). Looking
into the file showed the following.
...
#define _FSTYPSZ        16
#if !defined(_XPG4_2) || defined(__EXTENSIONS__)
#ifndef FSTYPSZ
#define FSTYPSZ _FSTYPSZ
#endif
...
Finally I could build MPICH with "CFLAGS=-m64 -std=c99 -D_STDC_C99
-D_POSIX_C_SOURCE=200112L -D_XOPEN_SOURCE=600 -DFSTYPSZ=_FSTYPSZ"
to the same point as with "CFLAGS=-m64". In both cases libmpicxx.so
wasn't available. I have attached the files for this build process
in the archive mpich-3.2-SunOS.sparc.64_gcc.tar.gz. Please let me
know if you need anything else.
Kind regards
Siegmar
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--
Pavan Balaji  âï¸
http://www.mcs.anl.gov/~balaji

Siegmar Gross

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