Re: [mpich-discuss] [EXTERNAL] Re: mpiexec error
Ken, The node file has 420 lines, with 20 lines for each host, including n022.cluster.com (21 nodes, 20 cores per node) Thanks, Kurt -----Original Message----- From: Raffenetti, Ken <[email protected]> Sent: Friday, May 6, 2022 12:13 PM To: [email protected] Cc: Mccall, Kurt E. (MSFC-EV41) <[email protected]> Subject: [EXTERNAL] Re: [mpich-discuss] mpiexec error Hi Kurt, Before running mpiexec, can you print out the hostfile to confirm the contents? Something like this: cat $PBS_HOSTFILE Ken On 5/6/22, 11:55 AM, "Mccall, Kurt E. (MSFC-EV41) via discuss" <[email protected]> wrote: Running MPICH 4.0.1 under Torque 5.1, I’m getting the mpiexec error “user specified host not in the PBS allocated list”. My qsub command is: qsub -V -j oe -e stdio -o stdio -f -X -l nodes=21:ppn=20 <bash_script> My mpiexec command is: mpiexec -print-all-exitcodes -enable-x -np 21 -wdir ${work_dir} -env DISPLAY localhost:10.0 --ppn 1 <more args> … Here is the full error message. Thanks for any help. [[email protected]] find_pbs_node_id (../../../../mpich-4.0.1/src/pm/hydra/tools/bootstrap/external/pbs_launch.c:27): user specified host not in the PBS allocated list [[email protected]] HYDT_bscd_pbs_launch_procs (../../../../mpich-4.0.1/src/pm/hydra/tools/bootstrap/external/pbs_launch.c:74): error finding PBS node ID for host n022 [[email protected]] HYDT_bsci_launch_procs (../../../../mpich-4.0.1/src/pm/hydra/tools/bootstrap/src/bsci_launch.c:17): launcher returned error while launching processes [[email protected]] fn_spawn (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmiserv_pmi_v1.c:580): launcher cannot launch processes [[email protected]] handle_pmi_cmd (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmiserv_cb.c:48): PMI handler returned error [[email protected]] control_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmiserv_cb.c:284): unable to process PMI command [[email protected]] HYDT_dmxu_poll_wait_for_event (../../../../mpich-4.0.1/src/pm/hydra/tools/demux/demux_poll.c:76): callback returned error status [[email protected]] HYD_pmci_wait_for_completion (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmiserv_pmci.c:160): error waiting for event [[email protected]] main (../../../../mpich-4.0.1/src/pm/hydra/ui/mpich/mpiexec.c:325): process manager error waiting for completion [proxy:0:[email protected]] HYD_pmcd_pmip_control_cmd_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip_cb.c:899): assert (!closed) failed [proxy:0:[email protected]] HYDT_dmxu_poll_wait_for_event (../../../../mpich-4.0.1/src/pm/hydra/tools/demux/[proxy:0:[email protected]] HYD_pmcd_pmip_control_cmd_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip_cb.c:899): assert (!closed) failed [proxy:0:[email protected]] HYDT_dmxu_poll_wait_for_event (../../../../mpich-4.0.1/src/pm/hydra/tools/demux/[proxy:0:[email protected]] HYD_pmcd_pmip_control_cmd_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip_cb.c:899): assert (!closed) failed [proxy:0:[email protected]] HYDT_dmxu_poll_wait_for_event (../../../../mpich-4.0.1/src/pm/hydra/tools/demux/[proxy:0:[email protected]] HYD_pmcd_pmip_control_cmd_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip_cb.c:899): assert (!closed) failed [proxy:0:[email protected]] HYDT_dmxu_poll_wait_for_event (../../../../mpich-4.0.1/src/pm/hydra/tools/demu[proxy:0:[email protected]] HYD_pmcd_pmip_control_cmd_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip_cb.c:899): assert (!closed) failed [proxy:0:[email protected]] HYDT_dmxu_poll_wait_for_event (../../../../mpich-4.0.1/src/pm/hydra/tools/demu[proxy:0:[email protected]] HYD_pmcd_pmip_control_cmd_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip_cb.c:899): assert (!closed) failed [proxy:0:[email protected]] HYDT_dmxu_poll_wait_for_event (../../../../mpich-4.0.1/src/pm/hydra/tools/demu[proxy:0:[email protected]] HYD_pmcd_pmip_control_cmd_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip_cb.c:899): assert (!closed) failed [proxy:0:[email protected]] HYDT_dmxu_poll_wait_for_event (../../../../mpich-4.0.1/src/pm/hydra/tools/demudemux_poll.c:76): callback returned error status [proxy:0:[email protected]] main (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip.c:169): demux engine error waiting for event demux_poll.c:76): callback returned error status [proxy:0:[email protected]] main (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip.c:169): demux engine error waiting for event [proxy:0:[email protected]] HYD_pmcd_pmip_control_cmd_cb (../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmip_cb.c:899): assert (!closed) failed
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Mccall, Kurt E. (MSFC-EV41)