Re: [mpich-discuss] Problems running MPICH jobs under SLURM
Pavan,
1. Can you run your application processes using "ddd" or some other debugger to see where the double free is coming from? You might have to build mpich with --enable-g=dbg to get the debug symbols in.
Here is the full stack backtrace: ----- 8< ----- 8< ----- 8< ----- 8< ----- 8< ----- 8< ----- #0 0x00007ffff6deb475 in *__GI_raise (sig=<optimized out>) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64 #1 0x00007ffff6dee6f0 in *__GI_abort () at abort.c:92 #2 0x00007ffff6e2652b in __libc_message (do_abort=<optimized out>, fmt=<optimized out>) at ../sysdeps/unix/sysv/linux/libc_fatal.c:189 #3 0x00007ffff6e2fd76 in malloc_printerr (action=3, str=0x7ffff6f081e0 "double free or corruption (fasttop)", ptr=<optimized out>) at malloc.c:6283 #4 0x00007ffff6e34aac in *__GI___libc_free (mem=<optimized out>) at malloc.c:3738 #5 0x00007ffff7a1d5d9 in populate_ids_from_mapping ( did_map=<synthetic pointer>, num_nodes=<synthetic pointer>, mapping=<optimized out>, pg=<optimized out>) at src/mpid/ch3/src/mpid_vc.c:1063 #6 MPIDI_Populate_vc_node_ids (pg=pg@entry=0x604910, our_pg_rank=our_pg_rank@entry=0) at src/mpid/ch3/src/mpid_vc.c:1193 #7 0x00007ffff7a17dd6 in MPID_Init (argc=argc@entry=0x7fffffffd97c, argv=argv@entry=0x7fffffffd970, requested=requested@entry=0, provided=provided@entry=0x7fffffffd8e8, has_args=has_args@entry=0x7fffffffd8e0, has_env=has_env@entry=0x7fffffffd8e4) at src/mpid/ch3/src/mpid_init.c:156 #8 0x00007ffff7acdf7f in MPIR_Init_thread (argc=argc@entry=0x7fffffffd97c, argv=argv@entry=0x7fffffffd970, required=required@entry=0, provided=provided@entry=0x7fffffffd944) at src/mpi/init/initthread.c:431 #9 0x00007ffff7acd90e in PMPI_Init (argc=0x7fffffffd97c, argv=0x7fffffffd970) at src/mpi/init/init.c:136 #10 0x000000000040086d in main () ----- >8 ----- >8 ----- >8 ----- >8 ----- >8 ----- >8 -----
2. Can you send me the output with the ssh launcher as well?
See mail sent off-list. Thanks, Markus -- Dr. Markus Geimer Juelich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49-2461-61-1773 Fax: +49-2461-61-6656 E-mail: [email protected] WWW: http://www.fz-juelich.de/jsc/ ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------
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Markus Geimer