Re: [mpich-discuss] MPICH 3.1rc2 build error on Darwin.
There should already be a fix for this in the latest master branch in git. It will be included in rc3, but you can try building from git if you'd like. Ken On 01/13/2014 10:12 PM, Salmon, Rene wrote:
Thanks for the replies. Here is a bit more info. I tried this with both mpich 3.1rc2 and mpich 3.0.4
mpich 3.1rc2 ============ This seems to compile with out any error messages using gcc. ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran --prefix=/opt/ilocal/ --enable-fc make
mpich 3.1rc2 ========= This fails. I have the output of make V=1 at the end of this email. ./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/opt/ilocal/ --enable-fc make
mpich 3.0.4 =========== This seems to work with mpich 3.0.4. No error messages. ./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/opt/ilocal/ --enable-fc make
Here is the output to make V=1 for mpich 3.2rc2 using intel compilers. ================================
In file included from ../src/include/mpi.h(2145), from cpi.c(7): ../src/include/mpio.h(227): warning #1787: alias definitions not supported on this platform; attribute ignored int MPI_File_get_atomicity(MPI_File fh, int *flag) MPICH_ATTR_WEAK_ALIAS("PMPI_File_get_atomicity"); ^
In file included from ../src/include/mpi.h(2145), from cpi.c(7): ../src/include/mpio.h(228): warning #1787: alias definitions not supported on this platform; attribute ignored int MPI_File_sync(MPI_File fh) MPICH_ATTR_WEAK_ALIAS("PMPI_File_sync"); ^
In file included from ../src/include/mpi.h(2145), from cpi.c(7): ../src/include/mpio.h(264): warning #1787: alias definitions not supported on this platform; attribute ignored MPI_File MPI_File_f2c(MPI_Fint file) MPICH_ATTR_WEAK_ALIAS("PMPI_File_f2c"); ^
In file included from ../src/include/mpi.h(2145), from cpi.c(7): ../src/include/mpio.h(265): warning #1787: alias definitions not supported on this platform; attribute ignored MPI_Fint MPI_File_c2f(MPI_File file) MPICH_ATTR_WEAK_ALIAS("PMPI_File_c2f"); ^
/bin/sh ../libtool --tag=CC --mode=link icc -O2 -L../lib -L/opt/ilocal/src/mpich-3.1rc2/src/mpl -L/opt/ilocal/src/mpich-3.1rc2/src/openpa/src -Wl,-flat_namespace -static -Wl,-flat_namespace -o cpi cpi.o -lm -lpthread -lmpich -lmpl -lopa -lopa -lmpl -lpthread libtool: link: icc -O2 -Wl,-flat_namespace -Wl,-flat_namespace -o cpi cpi.o -L../lib -L/opt/ilocal/src/mpich-3.1rc2/src/mpl -L/opt/ilocal/src/mpich-3.1rc2/src/openpa/src -lm /opt/ilocal/src/mpich-3.1rc2/lib/.libs/libmpich.a /opt/ilocal/src/mpich-3.1rc2/src/openpa/src/.libs/libopa.a /opt/ilocal/src/mpich-3.1rc2/src/mpl/.libs/libmpl.a -lpthread Undefined symbols for architecture x86_64: "_MPI_Bcast", referenced from: _main in cpi.o "_MPI_Comm_rank", referenced from: _main in cpi.o "_MPI_Comm_size", referenced from: _main in cpi.o "_MPI_Finalize", referenced from: _main in cpi.o "_MPI_Get_processor_name", referenced from: _main in cpi.o "_MPI_Init", referenced from: _main in cpi.o "_MPI_Reduce", referenced from: _main in cpi.o "_MPI_Wtime", referenced from: _main in cpi.o ld: symbol(s) not found for architecture x86_64 make[2]: *** [cpi] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2
-----Original Message----- From: [email protected] on behalf of Eric A. Borisch Sent: Mon 1/13/2014 12:39 AM To: [email protected] Subject: [mpich-discuss] MPICH 3.1rc2 build error on Darwin.
He's building with icc/ifort, so it's not being done via MacPorts. I don't think he even needs MP or Homebrew installed to build MPICH, just Intel's tools (and Xcode).
Building with 'make V=1' (or configuring with --disable-silent-rules) will provide more insight into what is going on. If you do have MP or Homebrew installed, you can rule out most interaction by removing their locations (/opt/local/bin, or /usr/local/bin, respectively) from PATH.
Jeff, I'm sorry to year you were unhappy with the (MP) tools. FWIW, it's been reworked to have a standardized MPICH version (with GCC's Fortan and the system's default C compiler) that is installed for use by any (macports-built) package that needs it.
Thanks, - Eric
On Sunday, January 12, 2014, Jeff Hammond wrote:
Might be the MacPorts garbage that bit me a while back too. If GCC fails, I suggest wiping MacPorts and installing Homebrew and the associated toolchain.
Jeff
Sent from my iPhone
> On Jan 12, 2014, at 7:58 PM, Rajeev Thakur <[email protected]> wrote: > > It sounds like a 32-bit, 64-bit incompatibility between some installed compilers/linker. Are you able to build with gcc? > > >> On Jan 10, 2014, at 3:09 PM, "Salmon, Rene" <[email protected]> wrote: >> >> >> Hi, >> >> Just trying to build MPICH 3.1rc2 on a Mac. The build seems to work but fails while trying to compile the examples. This is using the intel compilers. >> >> ifort,icc version 14.0.0.074 >> >> Here is the config line. >> ./configure CC=icc CXX=icpc F77=ifort FC=ifort --enable-fc >> >> >> error message. >> >> make[4]: Nothing to be done for `all'. >> make[4]: Nothing to be done for `all-am'. >> Making all in . >> Making all in . >> Making all in examples >> CCLD cpi >> Undefined symbols for architecture x86_64: >> "_MPI_Bcast", referenced from: >> _main in cpi.o >> "_MPI_Comm_rank", referenced from: >> _main in cpi.o >> "_MPI_Comm_size", referenced from: >> _main in cpi.o >> "_MPI_Finalize", referenced from: >> _main in cpi.o >> "_MPI_Get_processor_name", referenced from: >> _main in cpi.o >> "_MPI_Init", referenced from: >> _main in cpi.o >> "_MPI_Reduce", referenced from: >> _main in cpi.o >> "_MPI_Wtime", referenced from: >> _main in cpi.o >> ld: symbol(s) not found for architecture x86_64 >> make[2]: *** [cpi] Error 1 >> make[1]: *** [all-recursive] Error 1 >> make: *** [all] Error 2 >> >> Thank you. >> >> Rene >> _______________________________________________ >> discuss mailing list [email protected] >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list [email protected] > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
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Kenneth Raffenetti