Re: [mpich-discuss] mpiexec fails to launch any processes
Hui, Slurm doesn’t seem to be killing the job, as it still shows up when I run squeue. A gdb stack trace shows where mpiexec is stuck – does this tell you anything? #0 0x00007f9c895ddaa8 in poll () from /lib64/libc.so.6 #1 0x000000000045352c in HYDT_dmxu_poll_wait_for_event (wtime=-1) at ../../../../mpich-4.0.1/src/pm/hydra/tools/demux/demux_poll.c:39 #2 0x0000000000452e9a in HYDT_dmx_wait_for_event (wtime=-1) at ../../../../mpich-4.0.1/src/pm/hydra/tools/demux/demux.c:168 #3 0x000000000040cda4 in HYD_pmci_wait_for_completion (timeout=-1) at ../../../../mpich-4.0.1/src/pm/hydra/pm/pmiserv/pmiserv_pmci.c:157 #4 0x0000000000404177 in main (argc=33, argv=0x7fff054e6888) at ../../../../mpich-4.0.1/src/pm/hydra/ui/mpich/mpiexec.c:324 Thanks, Kurt From: Mccall, Kurt E. (MSFC-EV41) via discuss <[email protected]> Sent: Monday, June 13, 2022 4:16 PM To: Zhou, Hui <[email protected]>; [email protected] Cc: Mccall, Kurt E. (MSFC-EV41) <[email protected]> Subject: Re: [mpich-discuss] [EXTERNAL] Re: mpiexec fails to launch any processes Hui, That worked too. I guess I’ll have to find a way to pass a “verbose” argument to sbatch and see why Slurm is killing my application. Thanks, Kurt From: Zhou, Hui <[email protected]<mailto:[email protected]>> Sent: Monday, June 13, 2022 4:11 PM To: Mccall, Kurt E. (MSFC-EV41) <[email protected]<mailto:[email protected]>>; [email protected]<mailto:[email protected]> Subject: Re: [EXTERNAL] Re: mpiexec fails to launch any processes Kurt, Could you try launch hostname with the same command? mpiexec -launcher ssh -verbose -print-all-exitcodes -wdir <directory> -np 20 -ppn 1 hostname If that went okay, it then seems to point to your application. Something in your code made Slurm kill the job. -- Hui ________________________________ From: Mccall, Kurt E. (MSFC-EV41) <[email protected]<mailto:[email protected]>> Sent: Monday, June 13, 2022 4:02 PM To: Zhou, Hui <[email protected]<mailto:[email protected]>>; [email protected]<mailto:[email protected]> <[email protected]<mailto:[email protected]>> Subject: RE: [EXTERNAL] Re: mpiexec fails to launch any processes Hui, $ mpiexec -N 10 -hostfile MySlurmNodeFile2 hostname works properly, reporting from each of 10 nodes. Kurt From: Zhou, Hui <[email protected]<mailto:[email protected]>> Sent: Monday, June 13, 2022 2:44 PM To: [email protected]<mailto:[email protected]> Cc: Mccall, Kurt E. (MSFC-EV41) <[email protected]<mailto:[email protected]>> Subject: [EXTERNAL] Re: mpiexec fails to launch any processes Hi Kurt, I don't have much clue. Are you able to launch some trivial applications, for example, "hostname"? -- Hui ________________________________ From: Mccall, Kurt E. (MSFC-EV41) via discuss <[email protected]<mailto:[email protected]>> Sent: Monday, June 13, 2022 12:29 PM To: [email protected]<mailto:[email protected]> <[email protected]<mailto:[email protected]>> Cc: Mccall, Kurt E. (MSFC-EV41) <[email protected]<mailto:[email protected]>> Subject: Re: [mpich-discuss] mpiexec fails to launch any processes Outlook blocked the output file slurm.out that I had attached. Trying to send it again as slurm.txt. Kurt Hi, My mpiexec command fails to launch any processes. I ran it with the -verbose option but didn’t see any obvious errors in the output (attached). The command is: mpiexec -launcher ssh -verbose -print-all-exitcodes -wdir <directory> -np 20 -ppn 1 <more args…> I am running MPICH 4.0.1 under Slurm 20.11.8. Thanks for any help. Kurt
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Mccall, Kurt E. (MSFC-EV41)