Hi,
I am fiddling around with MG-RAST and
have come across a bit of a problem when using M5NR as my annotation source.
If I try generating a bar chart of any metagenomic data under the organism
classification tab using this M5NR database, whether it's my own or a public
dataset/s, I keep getting no bars in my graph - they are all zero!
When I try selecting my group of annotation sources as all of the databases
in the M5NR (i.e SwissProt, Genbank etc etc) then I get some lovely looking
bars on my chart. I'm assuming this is a bug with the M5NR database since
the organism classification using exactly the same databases all together
result in a proper chart being generated, so I thought I'd pass this on.
If it isn't a bug and I'm just not doing it properly then I apologise and
look forward to getting the proper method from you guys!
Other than this problem, so far I've
found MG-RAST to be very valuable in my analysis, although it is only at
the preliminary stages! So, thank you for producing such a user-friendly
and robust program
Cheers,
Sophie Davidson
Sophie Davidson |
BioScience Researcher |
BioScience Division
Department of Primary
Industries | Victorian
AgriBiosciences Centre |
1 Park Dr |
Bundoora VIC 3083
T: 03 9032 7111 |
F: 03 9479 3618 |
E: sophie.davidson@dpi.vic.gov.au
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