-----Original Message-----
From: Mark D'Souza <
dsouza@mcs.anl.gov>
Date: Thu, 23 Jun 2011 12:10:11
To: Rick White<
raw937@gmail.com>
Cc: <
mg-rast@mcs.anl.gov>
Subject: Re: [mg-rast] MGRAST - account request approved
Hi Rick,
Sorry about that, I reset the upload and it should work fine now.
Regards,
Mark D'Souza
-- for the MG-RAST team
mg-rast@mcs.anl.gov http://metagenomics.anl.gov/
If you need to respond to this email please address it to the mailing-list
mg-rast@mcs.anl.govOn Jun 22, 2011, at 11:49 PM, Rick White wrote:
> Hello again,
> I cant upload any more files...
>
> uploaded a RMStromCCMexMic20050722.fa.gz file and its stuck...
>
> I can't upload any more?
>
> Please help!
>
> Thanks
> rick
>
> On Tue, Jun 21, 2011 at 2:16 PM, Mark D'Souza <
dsouza@mcs.anl.gov> wrote:
> Hi,
>
> Give us the metagenome IDs and queries the next time you get an undefined tree, we will check into it. We have seen this happen before, querying the database for huge amounts of data is the problem and we are working on fixing this.
>
> What are the parameters you are using for the sequence trimming?
>
> Regards,
> Mark
>
>
>
> On Jun 21, 2011, at 11:50 AM, Rick White wrote:
>
> > I have noticed a bug with the tree output it keeps stating undefined? Is this a bug or something else?
> >
> > Yes, I will let you know the asap the renaming & deletion.
> >
> > Also, when I put in my amplicons & use the trimmer it takes the mean 400 bp down to 205 bp. It would be great to reject reads that are shorter then the length you want them.
> >
> > ONCE AGAIN, I AM A HUGE FAN OF THE SITE! I plan on using from now on.
> >
> > Keep up the great work!
> > Rick
> >
> > On Tue, Jun 21, 2011 at 9:32 AM, Mark D'Souza <
dsouza@mcs.anl.gov> wrote:
> > Hi, and thanks for the compliment,
> >
> > The deletion/renaming is something we are working on, if you let me know the MG-RAST IDs and changes to be made I can take care of it.
> >
> > Regards,
> > Mark D'Souza
> > -- for the MG-RAST team
> >
> >
mg-rast@mcs.anl.gov> >
http://metagenomics.anl.gov/
> >
> > If you need to respond to this email please address it to the mailing-list
mg-rast@mcs.anl.gov> >
> >
> >
> >
> > On Jun 20, 2011, at 5:49 PM, Rick White wrote:
> >
> > > Mark,
> > > MG-RAST, is the greatest thing ever!!!!!!!!!
> > >
> > > It has saved me so much TIME! I wished I would have known about it sooner.
> > >
> > > Quick question, how do I delete ones that completed analysis but I labeled wrong?
> > >
> > > Or how can I edit them? Just rename them it sends me a wierd error message. I would like to input pH etc or rename them!
> > >
> > > Thanks
> > > Rick
> > >
> > > On Thu, Jun 9, 2011 at 11:59 AM, Mark D'Souza <
dsouza@mcs.anl.gov> wrote:
> > > Hi,
> > >
> > > Can you tell us what you see when you login and the browser you are using? You will need to set the preferences for your browser to accept cookies (required for login) and we test on FireFox. The URL in the notification email you received (
http://metagenomics.anl.gov/) points to the V3.1 site.
> > >
> > > Regards,
> > > Mark D'Souza
> > > -- for the MG-RAST team
> > >
> > >
mg-rast@mcs.anl.gov
> > >
http://metagenomics.anl.gov/> > >
> > > If you need to respond to this email please address it to the mailing-list
mg-rast@mcs.anl.gov
> > >
> > >
> > >
> > >
> > > On Jun 9, 2011, at 12:46 PM, Rick White wrote:
> > >
> > > > Is verison 3 avaliable?
> > > >
> > > > I can't login or upload my data on using ubuntu??
> > > >
> > > > On Thu, Jun 9, 2011 at 10:27 AM, <
mg-rast@mcs.anl.gov> wrote:
> > > > Dear RIck White,
> > > >
> > > > your account request for access to our web service MGRAST has been accepted.
> > > >
> > > > Your login is: raw937
> > > > Your password is: v307SsCD
> > > >
> > > > We recommend to change the password immediately. To do so please go to our web service
http://metagenomics.anl.gov/ and change your password from the account management.
> > > >
> > > >
> > > > --
> > > >
> > > > This email was automatically generated by the MGRAST web service. Do not reply.
> > > >
> > > >
> > > >
> > > > --
> > > > Richard Allen White III M.S.
> > > > PhD Student - Suttle Lab
> > > > Department of Microbiology & Immunology
> > > > The University of British Columbia
> > > > Vancouver, BC, Canada
> > > > V6T 1Z4
> > > > ph.
(604) 827-5715
> > > > cell. ***My new number is
604-440-5150***
> > > >
http://www.ocgy.ubc.ca/~suttle/
> > > >
> > > > For Shipping:
> > > > Richard Allen White III & Amy Chan
> > > > Suttle Lab
> > > > UBC-Botany/zoology/micro
> > > > 1316-6270 University Blvd.
> > > > Vancouver, BC
> > > > V6T 1Z4
> > > >
1.604.827.5715> > > >
> > >
> > >
> > >
> > >
> > > --
> > > Richard Allen White III M.S.
> > > PhD Student - Suttle Lab
> > > Department of Microbiology & Immunology
> > > The University of British Columbia
> > > Vancouver, BC, Canada
> > > V6T 1Z4
> > > ph.
(604) 827-5715> > > cell. ***My new number is
604-440-5150***
> > >
http://www.ocgy.ubc.ca/~suttle/> > >
> > > For Shipping:
> > > Richard Allen White III & Amy Chan
> > > Suttle Lab
> > > UBC-Botany/zoology/micro
> > > 1316-6270 University Blvd.
> > > Vancouver, BC
> > > V6T 1Z4
> > >
1.604.827.5715
> > >
> >
> >
> >
> >
> > --
> > Richard Allen White III M.S.
> > PhD Student - Suttle Lab
> > Department of Microbiology & Immunology
> > The University of British Columbia
> > Vancouver, BC, Canada
> > V6T 1Z4
> > ph.
(604) 827-5715> > cell. ***My new number is
604-440-5150***
> >
http://www.ocgy.ubc.ca/~suttle/> >
> > For Shipping:
> > Richard Allen White III & Amy Chan
> > Suttle Lab
> > UBC-Botany/zoology/micro
> > 1316-6270 University Blvd.
> > Vancouver, BC
> > V6T 1Z4
> >
1.604.827.5715> >
>
>
>
>
> --
> Richard Allen White III M.S.
> PhD Student - Suttle Lab
> Department of Microbiology & Immunology
> The University of British Columbia
> Vancouver, BC, Canada
> V6T 1Z4
> ph.
(604) 827-5715> cell. ***My new number is
604-440-5150***
>
http://www.ocgy.ubc.ca/~suttle/
>
> For Shipping:
> Richard Allen White III & Amy Chan
> Suttle Lab
> UBC-Botany/zoology/micro
> 1316-6270 University Blvd.
> Vancouver, BC
> V6T 1Z4
>
1.604.827.5715
>