Re: [mg-rast] Your MG-RAST job (3300)
Hi Ramiro, 2828 is proceeding normally. There are over 3 Gbp of sequence data in the queue so some slowdown is inevitable, especially for the large jobs. I am checking into the other two. Regards, Mark ----- "Ramiro Logares" <[email protected]> wrote:
From: "Ramiro Logares" <[email protected]> To: "Mark D'Souza" <[email protected]> Sent: Thursday, April 30, 2009 10:25:52 AM GMT -06:00 US/Canada Central Subject: Re: Your MG-RAST job (3300)
Hi, Thanks a lot for checking and fixing this. BTW, I have two jobs running (3160 and 1112) that seem to be stopped due to a failure. Then the job 2828 seems to be OK, but it has been several days in the same status, maybe it just stopped? should I resubmit these jobs?
Thanks for having this great portal running! Ramiro
On Thu, Apr 30, 2009 at 3:27 AM, Mark D'Souza <[email protected]> wrote:
Hi,
The job you submitted to MG-RAST (3300) has failed as the sequence file has incorrectly formatted fasta -- the sequence ID Gruv_6 should be on a new line.
Gruv_5
CGTAATCAACGCGAGCTAGTGACTCGCGCTTACTGGGAATTCCACGTTCACGGAGAAAAATTTCAAGCCCCGATCCCAATCACGAAGGGGTTTCAGCGGGTTACCCACTCCTTTCGGAGCAGGAAGAACACGCTTATCCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGCTCAATTTC
GTGTAGCTAACCGCTACTTGTCCCTCTAAGAAGTACGCGCCGACAAAAGATCGGCGTACTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTCTCAATCTGTCAATCCTTACAGTGTCCGGGCCGGGTGAGTTT
TCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTCTGCAACCATACTTCCCCCGGAACCCAAAGACTTTGG>Gruv_6
CGTAGATATTCGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGCCCATTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGAGTGCTAGTTGTCGGCATGCATGCATGTCGGTGACGCAGCTAACGCCTTAAGCACTCCGCCTGGGGAGTACGGTCGCAAGATT
AAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCACCTTTTGACATGCCTGGACCGCCACAGAGATGTGGTTTTCCCTTCGGGGACTAGGACACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAA
CCCTCGCTATTAGTTGCCATCAGGTTTGGCTGGGCACTCTAATAGGACCGCCGGTGGTAAGCCGGA
I made this change and restarted the job, please check your sequence data to make sure that nothing was lost while preparing the files for resubmission. You may also choose to delete this job and resubmit a corrected fasta file.
Regards, Mark D'Souza -- for the MG-RAST team
-- Regards, Mark D'Souza -- for the MG-RAST team [email protected] http://metagenomics.nmpdr.org/
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Mark D'Souza