It looks great Mark ----- Original Message ----- From: Mark D'Souza <[email protected]> To: Leslie McNeil <[email protected]> Cc: mg-rast <[email protected]> Sent: Mon, 22 Dec 2008 15:06:04 -0600 (CST) Subject: Re: [mg-rast] downloads Hi, I have this working in my sandbox: http://bioseed.mcs.anl.gov/~dsouza/FIG/metagenomics.cgi on the JobDetails page. The drop-down select now has: Genbank export -- gbk file DNA sequence (MG-RAST) -- contigs file (used by mgrast for processing) DNA sequence (submitted) -- uploaded file from raw directory DNA sequence quality -- uploaded quality file AA locations -- peg tbl file AA sequence -- peg fasta file AA function -- assigned_functions file AA subsystems -- subsystems bindings file Only the text on the left gets displayed, so we want it to be be self-evident what it points to. Suggestions? Each option is offered only if the file is present and can be unambiguously identified. If I don't hear from anyone I will drop this into CVS and it will go in with the next update. I do worry about downloads of files which are many 10s or 100s of MB in size. Will deal with it when it becomes an issue. Mark On Mon, 22 Dec 2008, Mark D'Souza wrote:

Leslie,

The one download that all jobs should have is the genbank file.

There are some others which are being created, and could be made downloadable -- contigs, subsystem bindings, Features -- peg tbl (peg locations), peg fasta, peg assigned functions.

Any others?

If I don't hear from anyone I will add these to the download options.

Does anyone know which IDs are used in the contigs file? V1 seem to have mapped IDs, and V2 seem to have original (as submitted) IDs.

Mark

On Sun, 21 Dec 2008, Leslie McNeil wrote:

...

Hello,

I have been looking at various completed jobs while making a tutorial. Different jobs have different available download formats. Which do I list in a tutorial document?

thanks, leslie

Leslie Klis McNeil [email protected] 217-244-0597