I've updated mg_preprocess on the production mg-rast. - Daniel On Oct 31, 2007, at 10:20 AM, Robert Olson wrote:

The job that was bad because of the ^M line endings got restarted and still generated a bad meta.xml. The fix I made to invoke reformat_contigs should get installed ASAP onto the server. (as I am mostly out of the loop on the MGRAST I would prefer not to be updating the code there).

I have marked that job inactive as it has bogus fasta data.

Also, the manually changed job 305 meta.xml had bad perms.

olson@bio-ppc-head-2:~$ ls -l /vol/metagenome-48-hour/Jobs.prod/305/ meta.xml -rw-r--r-- 1 redwards metag48 2258876 Oct 22 20:05 /vol/ metagenome-48-hour/Jobs.prod/305/meta.xml

I have fixed that as well.