Bob, We need 3 metagenomes to have fully functional analyses for the CMORE class next week, so I will go ahead and do the port as below. After that can I run this for every genome in mg-rast-prod/jobs/ ? Mark On Wed, 25 Jun 2008, Robert Olson wrote:

those are genomes that have not been loaded yet. You can trigger a load by sourcing the correct fig-user-env and running

mg_port_job /vol/mg-rast-test/jobs/565

(for instance, for the job below).

--bob

On Jun 25, 2008, at 11:05 AM, Mark D'Souza wrote:

...

Hi,

From the v2.0 production site, the metabolic reconstruction and phylogenetic classification produce the error:

DBD::Pg::st execute failed: ERROR: relation "tax_sim_best_by_psc_565" does not exist

URLs: http://mg-rast.mcs.anl.gov/mg-rast/FIG/metagenomics.cgi? page=MetagenomeProfile&dataset=SEED:subsystem_tax&metagenome=4440690.3 http://mg-rast.mcs.anl.gov/mg-rast/FIG/metagenomics.cgi? page=MetagenomeProfile&dataset=rdp:16s_taxonomy&metagenome=4440690.3

I tried a couple of genomes and get the same error.

Mark