Hi Vegendla, Thank you for your help, I installed hdf5 but when I try installing moab I get some errors here is the output of running ./configure --with-mpi --with-hdf5=/home/user/install/hdf5 --prefix=/home/user/install/moab/bld checking how to get verbose linking output from mpif90... configure: WARNING: compilation failed checking for Fortran libraries of mpif90... checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... configure: error: in `/Users/robabinyahib/Documents/Code/moab-4.6.3': configure: error: cannot compile a simple Fortran program See `config.log' for more details any thoughts of what is going wrong? thank you.From: [email protected] To: [email protected]; [email protected] Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Mon, 21 Jul 2014 13:53:13 +0000 Lily, You have to install HDF5. The following steps may help you. #hdf5 install procedure##

mkdir /home/user/install/hdf5 cd hdf5 tar xzf ~/hdf5-1.8.12.tar.gz ln -s hdf5-1.8.12 src cd bld CC=/software/mvapich2-intel-psm-1.9.5/bin/mpicc ../src/configure --enable-shared --prefix=/home/user/install/hdf5 make make install

#MOAB##

git clone https://bitbucket.org/fathomteam/moab cd moab autoreconf -fi ./configure --with-mpi --with-hdf5=/home/user/install/hdf5 --prefix=/home/user/install/moab/bld make

make install

Prasad From: [email protected] [mailto:[email protected]] On Behalf Of the lily Sent: Monday, July 21, 2014 3:07 AM To: [email protected] Subject: [MOAB-dev] make check returns error when installing moab Hi everyone, I keep getting an error when I try to install moab, here are the steps I did and the output for each step, Step1: ./configure output: configure: WARNING: ************************************************************************* * MOAB has been configured w/out the HDF5 library. * Support for native file format is disabled! ************************************************************************* configure: WARNING: ************************************************************************* * MOAB has been configured w/out the NetCDF library. * Support for ExodusII/Genesis and other file formats is disabled! ************************************************************************* Step2: make output: make[3]: Nothing to be done for `all-am'. Making all in io make[3]: Nothing to be done for `all'. Making all in dual make[3]: Nothing to be done for `all'. Making all in obb make[3]: Nothing to be done for `all'. Making all in perf Making all in point_location make[4]: Nothing to be done for `all'. make[4]: Nothing to be done for `all-am'. Making all in dagmc make[3]: Nothing to be done for `all'. Making all in oldinc make[3]: Nothing to be done for `all'. Making all in doc make[2]: Nothing to be done for `all'. ./config.status --version | \ sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \ tr "'" "\n" | \ sed -e '/^ *$/d' > moab.config Step3: make check output: libtool: link: unrecognized option `-O2' libtool: link: Try `libtool --help' for more information. make[4]: *** [ScdMeshF90] Error 1 make[3]: *** [check-am] Error 2 make[2]: *** [check] Error 2 make[1]: *** [check-recursive] Error 1 make: *** [check-recursive] Error 1 I do not know what exactly went wrong, do I need to install any libraries before installing moab? Thank you.

Hi Grindeanu, Thank you for your help. Attached the config.log Thank you. From: [email protected] To: [email protected]; [email protected] Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Mon, 21 Jul 2014 14:12:47 +0000 what version of moab did you try? checkout a fresh clone from master ([email protected]:fathomteam/moab.git) can you send your config.log ? Iulian From: [email protected] [[email protected]] on behalf of the lily [[email protected]] Sent: Monday, July 21, 2014 3:07 AM To: [email protected] Subject: [MOAB-dev] make check returns error when installing moab Hi everyone, I keep getting an error when I try to install moab, here are the steps I did and the output for each step, Step1: ./configure output: configure: WARNING: ************************************************************************* * MOAB has been configured w/out the HDF5 library. * Support for native file format is disabled! ************************************************************************* configure: WARNING: ************************************************************************* * MOAB has been configured w/out the NetCDF library. * Support for ExodusII/Genesis and other file formats is disabled! ************************************************************************* Step2: make output: make[3]: Nothing to be done for `all-am'. Making all in io make[3]: Nothing to be done for `all'. Making all in dual make[3]: Nothing to be done for `all'. Making all in obb make[3]: Nothing to be done for `all'. Making all in perf Making all in point_location make[4]: Nothing to be done for `all'. make[4]: Nothing to be done for `all-am'. Making all in dagmc make[3]: Nothing to be done for `all'. Making all in oldinc make[3]: Nothing to be done for `all'. Making all in doc make[2]: Nothing to be done for `all'. ./config.status --version | \ sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \ tr "'" "\n" | \ sed -e '/^ *$/d' > moab.config Step3: make check output: libtool: link: unrecognized option `-O2' libtool: link: Try `libtool --help' for more information. make[4]: *** [ScdMeshF90] Error 1 make[3]: *** [check-am] Error 2 make[2]: *** [check] Error 2 make[1]: *** [check-recursive] Error 1 make: *** [check-recursive] Error 1 I do not know what exactly went wrong, do I need to install any libraries before installing moab? Thank you.

when I run config I do not get any errors but when I do make and make check I get the following ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[4]: *** [testc_cbind] Error 1 make[3]: *** [check-am] Error 2 make[2]: *** [check] Error 2 make[1]: *** [check-recursive] Error 1 make: *** [check-recursive] Error 1 Thanks.

From: [email protected] Date: Mon, 21 Jul 2014 17:48:42 -0500 Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

The log shows that the fortran compiler is invalid in your OpenMPI installation. That is perfectly fine. We will have to disable fortran support if an appropriate compiler is not found.

Can you try again with ./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran

Let us know if configure still fails, along with config logs.

Vijay

On Mon, Jul 21, 2014 at 5:41 PM, the lily <[email protected]> wrote:

...

Hi Grindeanu,

Thank you for your help. Attached the config.log

Thank you.

________________________________ From: [email protected]

To: [email protected]; [email protected] Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Mon, 21 Jul 2014 14:12:47 +0000

what version of moab did you try? checkout a fresh clone from master ([email protected]:fathomteam/moab.git)

can you send your config.log ?

Iulian ________________________________ From: [email protected] [[email protected]] on behalf of the lily [[email protected]] Sent: Monday, July 21, 2014 3:07 AM To: [email protected] Subject: [MOAB-dev] make check returns error when installing moab

Hi everyone,

I keep getting an error when I try to install moab, here are the steps I did and the output for each step,

Step1: ./configure output:

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the HDF5 library.

* Support for native file format is disabled!

*************************************************************************

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the NetCDF library.

* Support for ExodusII/Genesis and other file formats is disabled!

*************************************************************************

Step2: make

output:

make[3]: Nothing to be done for `all-am'.

Making all in io

make[3]: Nothing to be done for `all'.

Making all in dual

make[3]: Nothing to be done for `all'.

Making all in obb

make[3]: Nothing to be done for `all'.

Making all in perf

Making all in point_location

make[4]: Nothing to be done for `all'.

make[4]: Nothing to be done for `all-am'.

Making all in dagmc

make[3]: Nothing to be done for `all'.

Making all in oldinc

make[3]: Nothing to be done for `all'.

Making all in doc

make[2]: Nothing to be done for `all'.

./config.status --version | \

sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \

tr "'" "\n" | \

sed -e '/^ *$/d' > moab.config

Step3: make check

output:

libtool: link: unrecognized option `-O2'

libtool: link: Try `libtool --help' for more information.

make[4]: *** [ScdMeshF90] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

I do not know what exactly went wrong, do I need to install any libraries before installing moab?

Thank you.

Couple of things for your to check: 1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct 2) Configure MOAB without MPI (with --disable-fortran). See if make check passes 3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again 4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel Let us know which of these steps fail. Vijay On Tue, Jul 22, 2014 at 7:23 PM, the lily <[email protected]> wrote:

Hi Everyone,

I'm trying to install moab to use it with DIY http://www.mcs.anl.gov/~tpeterka/ I tried the following commands to install moab

./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran make make check but until now I was not able to install moab and Im getting the following errors

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

and now even diy is not working and I think it is something has to do with mpi because I'm trying to run a code that include some mpi call

and I'm getting the following errors

MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in merge.o

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make: *** [merge] Error 1

I hope someone call help me to fix this

________________________________ From: [email protected] To: [email protected] CC: [email protected]; [email protected]

Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Tue, 22 Jul 2014 02:11:45 +0300

when I run config I do not get any errors but when I do make and make check I get the following

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

Thanks.

...

From: [email protected] Date: Mon, 21 Jul 2014 17:48:42 -0500 Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

The log shows that the fortran compiler is invalid in your OpenMPI installation. That is perfectly fine. We will have to disable fortran support if an appropriate compiler is not found.

Can you try again with ./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran

Let us know if configure still fails, along with config logs.

Vijay

On Mon, Jul 21, 2014 at 5:41 PM, the lily <[email protected]> wrote:

...

Hi Grindeanu,

Thank you for your help. Attached the config.log

Thank you.

________________________________ From: [email protected]

To: [email protected]; [email protected] Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Mon, 21 Jul 2014 14:12:47 +0000

what version of moab did you try? checkout a fresh clone from master ([email protected]:fathomteam/moab.git)

can you send your config.log ?

Iulian ________________________________ From: [email protected] [[email protected]] on behalf of the lily [[email protected]] Sent: Monday, July 21, 2014 3:07 AM To: [email protected] Subject: [MOAB-dev] make check returns error when installing moab

Hi everyone,

I keep getting an error when I try to install moab, here are the steps I did and the output for each step,

Step1: ./configure output:

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the HDF5 library.

* Support for native file format is disabled!

*************************************************************************

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the NetCDF library.

* Support for ExodusII/Genesis and other file formats is disabled!

*************************************************************************

Step2: make

output:

make[3]: Nothing to be done for `all-am'.

Making all in io

make[3]: Nothing to be done for `all'.

Making all in dual

make[3]: Nothing to be done for `all'.

Making all in obb

make[3]: Nothing to be done for `all'.

Making all in perf

Making all in point_location

make[4]: Nothing to be done for `all'.

make[4]: Nothing to be done for `all-am'.

Making all in dagmc

make[3]: Nothing to be done for `all'.

Making all in oldinc

make[3]: Nothing to be done for `all'.

Making all in doc

make[2]: Nothing to be done for `all'.

./config.status --version | \

sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \

tr "'" "\n" | \

sed -e '/^ *$/d' > moab.config

Step3: make check

output:

libtool: link: unrecognized option `-O2'

libtool: link: Try `libtool --help' for more information.

make[4]: *** [ScdMeshF90] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

I do not know what exactly went wrong, do I need to install any libraries before installing moab?

Thank you.

These error messages are incomplete. Please use make check | tee make.log and send us the make logs for us to help you better. Also I notice that you are using 4.6.3. We are on the verge of the next big release and so if you want to work off the repository directly, we can make the appropriate fixes for clang 3.3 + OSX Mavericks and push those as part of the upcoming release. We haven't tested with this combination of compiler + OS and so its been hard to replicate so far. Use: git clone https://bitbucket.org/fathomteam/moab.git moab autoreconf -fi ./configure --options make all | tee make.log make check Then send us your config.log, make.log and test/test-suite.log appropriately as things fail. Vijay On Tue, Jul 22, 2014 at 8:36 PM, the lily <[email protected]> wrote:

Hi Vijya,

1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct

I checked running a simple example and it is working.

2) Configure MOAB without MPI (with --disable-fortran). See if make check passes

This is what I tried ./configure --with-hdf5=/usr/local/hdf5 --disable-fortran

I get the following when I do make check

Making check in doc

make[1]: Nothing to be done for `check'.

3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again

./configure --with-mpi=/usr/local --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3 --disable-fortran

a(iMesh_MOAB.o)

_iMesh_save in libiMesh.a(iMesh_MOAB.o)

_iMesh_getEntitiesRec in libiMesh.a(iMesh_MOAB.o)

_iMesh_getVtxArrCoords in libiMesh.a(iMesh_MOAB.o)

_iMesh_getEntArrAdj in libiMesh.a(iMesh_MOAB.o)

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[1]: *** [example] Error 1

make: *** [check] Error 2

4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel

./configure --with-hdf5=/usr/local/hdf5 --enable-parallel --disable-fortran

The output of make check:

Making check in doc

make[1]: Nothing to be done for `check'.

thank you.

...

From: [email protected] Date: Tue, 22 Jul 2014 19:26:36 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

Couple of things for your to check:

1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct 2) Configure MOAB without MPI (with --disable-fortran). See if make check passes 3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again 4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel

Let us know which of these steps fail.

Vijay

On Tue, Jul 22, 2014 at 7:23 PM, the lily <[email protected]> wrote:

...

Hi Everyone,

I'm trying to install moab to use it with DIY http://www.mcs.anl.gov/~tpeterka/ I tried the following commands to install moab

./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran make make check but until now I was not able to install moab and Im getting the following errors

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

and now even diy is not working and I think it is something has to do with mpi because I'm trying to run a code that include some mpi call

and I'm getting the following errors

MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in merge.o

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make: *** [merge] Error 1

I hope someone call help me to fix this

________________________________ From: [email protected] To: [email protected] CC: [email protected]; [email protected]

Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Tue, 22 Jul 2014 02:11:45 +0300

when I run config I do not get any errors but when I do make and make check I get the following

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

Thanks.

...

From: [email protected] Date: Mon, 21 Jul 2014 17:48:42 -0500 Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

The log shows that the fortran compiler is invalid in your OpenMPI installation. That is perfectly fine. We will have to disable fortran support if an appropriate compiler is not found.

Can you try again with ./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran

Let us know if configure still fails, along with config logs.

Vijay

On Mon, Jul 21, 2014 at 5:41 PM, the lily <[email protected]> wrote:

...

Hi Grindeanu,

Thank you for your help. Attached the config.log

Thank you.

________________________________ From: [email protected]

To: [email protected]; [email protected] Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Mon, 21 Jul 2014 14:12:47 +0000

what version of moab did you try? checkout a fresh clone from master ([email protected]:fathomteam/moab.git)

can you send your config.log ?

Iulian ________________________________ From: [email protected] [[email protected]] on behalf of the lily [[email protected]] Sent: Monday, July 21, 2014 3:07 AM To: [email protected] Subject: [MOAB-dev] make check returns error when installing moab

Hi everyone,

I keep getting an error when I try to install moab, here are the steps I did and the output for each step,

Step1: ./configure output:

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the HDF5 library.

* Support for native file format is disabled!

*************************************************************************

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the NetCDF library.

* Support for ExodusII/Genesis and other file formats is disabled!

*************************************************************************

Step2: make

output:

make[3]: Nothing to be done for `all-am'.

Making all in io

make[3]: Nothing to be done for `all'.

Making all in dual

make[3]: Nothing to be done for `all'.

Making all in obb

make[3]: Nothing to be done for `all'.

Making all in perf

Making all in point_location

make[4]: Nothing to be done for `all'.

make[4]: Nothing to be done for `all-am'.

Making all in dagmc

make[3]: Nothing to be done for `all'.

Making all in oldinc

make[3]: Nothing to be done for `all'.

Making all in doc

make[2]: Nothing to be done for `all'.

./config.status --version | \

sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \

tr "'" "\n" | \

sed -e '/^ *$/d' > moab.config

Step3: make check

output:

libtool: link: unrecognized option `-O2'

libtool: link: Try `libtool --help' for more information.

make[4]: *** [ScdMeshF90] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

I do not know what exactly went wrong, do I need to install any libraries before installing moab?

Thank you.

You need autotools installed for your mac for autoreconf to work. If you have macports, this should be easy. Meanwhile, you can try the nightly from here: ftp://ftp.mcs.anl.gov/pub/fathom/moab-nightly.tar.gz Vijay On Wed, Jul 23, 2014 at 4:52 PM, the lily <[email protected]> wrote:

Hi

I tried before cloning moab from the git repository but it does not have a configure file and when I run autoreconf -fi I get the following

bash: autoreconf: command not found

thanks.

...

From: [email protected] Date: Tue, 22 Jul 2014 22:19:29 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

These error messages are incomplete. Please use make check | tee make.log and send us the make logs for us to help you better. Also I notice that you are using 4.6.3.

We are on the verge of the next big release and so if you want to work off the repository directly, we can make the appropriate fixes for clang 3.3 + OSX Mavericks and push those as part of the upcoming release. We haven't tested with this combination of compiler + OS and so its been hard to replicate so far.

Use: git clone https://bitbucket.org/fathomteam/moab.git moab autoreconf -fi ./configure --options make all | tee make.log make check

Then send us your config.log, make.log and test/test-suite.log appropriately as things fail.

Vijay

On Tue, Jul 22, 2014 at 8:36 PM, the lily <[email protected]> wrote:

...

Hi Vijya,

1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct

I checked running a simple example and it is working.

2) Configure MOAB without MPI (with --disable-fortran). See if make check passes

This is what I tried ./configure --with-hdf5=/usr/local/hdf5 --disable-fortran

I get the following when I do make check

Making check in doc

make[1]: Nothing to be done for `check'.

3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again

./configure --with-mpi=/usr/local --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3 --disable-fortran

a(iMesh_MOAB.o)

_iMesh_save in libiMesh.a(iMesh_MOAB.o)

_iMesh_getEntitiesRec in libiMesh.a(iMesh_MOAB.o)

_iMesh_getVtxArrCoords in libiMesh.a(iMesh_MOAB.o)

_iMesh_getEntArrAdj in libiMesh.a(iMesh_MOAB.o)

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[1]: *** [example] Error 1

make: *** [check] Error 2

4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel

./configure --with-hdf5=/usr/local/hdf5 --enable-parallel --disable-fortran

The output of make check:

Making check in doc

make[1]: Nothing to be done for `check'.

thank you.

...

From: [email protected] Date: Tue, 22 Jul 2014 19:26:36 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

Couple of things for your to check:

1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct 2) Configure MOAB without MPI (with --disable-fortran). See if make check passes 3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again 4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel

Let us know which of these steps fail.

Vijay

On Tue, Jul 22, 2014 at 7:23 PM, the lily <[email protected]> wrote:

...

Hi Everyone,

I'm trying to install moab to use it with DIY http://www.mcs.anl.gov/~tpeterka/ I tried the following commands to install moab

./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran make make check but until now I was not able to install moab and Im getting the following errors

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

and now even diy is not working and I think it is something has to do with mpi because I'm trying to run a code that include some mpi call

and I'm getting the following errors

MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in merge.o

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make: *** [merge] Error 1

I hope someone call help me to fix this

________________________________ From: [email protected] To: [email protected] CC: [email protected]; [email protected]

Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Tue, 22 Jul 2014 02:11:45 +0300

when I run config I do not get any errors but when I do make and make check I get the following

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

Thanks.

...

From: [email protected] Date: Mon, 21 Jul 2014 17:48:42 -0500 Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

The log shows that the fortran compiler is invalid in your OpenMPI installation. That is perfectly fine. We will have to disable fortran support if an appropriate compiler is not found.

Can you try again with ./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran

Let us know if configure still fails, along with config logs.

Vijay

On Mon, Jul 21, 2014 at 5:41 PM, the lily <[email protected]> wrote:

...

Hi Grindeanu,

Thank you for your help. Attached the config.log

Thank you.

________________________________ From: [email protected]

To: [email protected]; [email protected] Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Mon, 21 Jul 2014 14:12:47 +0000

what version of moab did you try? checkout a fresh clone from master ([email protected]:fathomteam/moab.git)

can you send your config.log ?

Iulian ________________________________ From: [email protected] [[email protected]] on behalf of the lily [[email protected]] Sent: Monday, July 21, 2014 3:07 AM To: [email protected] Subject: [MOAB-dev] make check returns error when installing moab

Hi everyone,

I keep getting an error when I try to install moab, here are the steps I did and the output for each step,

Step1: ./configure output:

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the HDF5 library.

* Support for native file format is disabled!

*************************************************************************

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the NetCDF library.

* Support for ExodusII/Genesis and other file formats is disabled!

*************************************************************************

Step2: make

output:

make[3]: Nothing to be done for `all-am'.

Making all in io

make[3]: Nothing to be done for `all'.

Making all in dual

make[3]: Nothing to be done for `all'.

Making all in obb

make[3]: Nothing to be done for `all'.

Making all in perf

Making all in point_location

make[4]: Nothing to be done for `all'.

make[4]: Nothing to be done for `all-am'.

Making all in dagmc

make[3]: Nothing to be done for `all'.

Making all in oldinc

make[3]: Nothing to be done for `all'.

Making all in doc

make[2]: Nothing to be done for `all'.

./config.status --version | \

sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \

tr "'" "\n" | \

sed -e '/^ *$/d' > moab.config

Step3: make check

output:

libtool: link: unrecognized option `-O2'

libtool: link: Try `libtool --help' for more information.

make[4]: *** [ScdMeshF90] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

I do not know what exactly went wrong, do I need to install any libraries before installing moab?

Thank you.

clang is incompatible with the gfortran you have installed. The configuration and make went through fine according to your logs.Try configuring again with --disable-fortran explicitly specified. Vijay On Wed, Jul 23, 2014 at 7:20 PM, the lily <[email protected]> wrote:

Hi,

Attached the config and make log files, this is what I have done.

1- download ftp://ftp.mcs.anl.gov/pub/fathom/moab-nightly.tar.gz 2- unzip the file 3- cd moab-4.7.0pre 4- ./configure 5- make all | tee make.log 6- make check gave me the following

make[4]: DHAVE_CONFIG_H: No such file or directory

make[4]: [ScdMeshF90.o] Error 1 (ignored)

/bin/sh ../../libtool --tag=FC --mode=link -O2 -o ScdMeshF90 ScdMeshF90.o libiMesh.la ../../src/libMOAB.la -lm

libtool: link: unrecognized option `-O2'

libtool: link: Try `libtool --help' for more information.

make[4]: *** [ScdMeshF90] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

thanks.

...

From: [email protected] Date: Wed, 23 Jul 2014 18:26:29 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

You need autotools installed for your mac for autoreconf to work. If you have macports, this should be easy.

Meanwhile, you can try the nightly from here: ftp://ftp.mcs.anl.gov/pub/fathom/moab-nightly.tar.gz

Vijay

On Wed, Jul 23, 2014 at 4:52 PM, the lily <[email protected]> wrote:

...

Hi

I tried before cloning moab from the git repository but it does not have a configure file and when I run autoreconf -fi I get the following

bash: autoreconf: command not found

thanks.

...

From: [email protected] Date: Tue, 22 Jul 2014 22:19:29 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

These error messages are incomplete. Please use make check | tee make.log and send us the make logs for us to help you better. Also I notice that you are using 4.6.3.

We are on the verge of the next big release and so if you want to work off the repository directly, we can make the appropriate fixes for clang 3.3 + OSX Mavericks and push those as part of the upcoming release. We haven't tested with this combination of compiler + OS and so its been hard to replicate so far.

Use: git clone https://bitbucket.org/fathomteam/moab.git moab autoreconf -fi ./configure --options make all | tee make.log make check

Then send us your config.log, make.log and test/test-suite.log appropriately as things fail.

Vijay

On Tue, Jul 22, 2014 at 8:36 PM, the lily <[email protected]> wrote:

...

Hi Vijya,

1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct

I checked running a simple example and it is working.

2) Configure MOAB without MPI (with --disable-fortran). See if make check passes

This is what I tried ./configure --with-hdf5=/usr/local/hdf5 --disable-fortran

I get the following when I do make check

Making check in doc

make[1]: Nothing to be done for `check'.

3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again

./configure --with-mpi=/usr/local --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3 --disable-fortran

a(iMesh_MOAB.o)

_iMesh_save in libiMesh.a(iMesh_MOAB.o)

_iMesh_getEntitiesRec in libiMesh.a(iMesh_MOAB.o)

_iMesh_getVtxArrCoords in libiMesh.a(iMesh_MOAB.o)

_iMesh_getEntArrAdj in libiMesh.a(iMesh_MOAB.o)

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[1]: *** [example] Error 1

make: *** [check] Error 2

4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel

./configure --with-hdf5=/usr/local/hdf5 --enable-parallel --disable-fortran

The output of make check:

Making check in doc

make[1]: Nothing to be done for `check'.

thank you.

...

From: [email protected] Date: Tue, 22 Jul 2014 19:26:36 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

Couple of things for your to check:

1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct 2) Configure MOAB without MPI (with --disable-fortran). See if make check passes 3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again 4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel

Let us know which of these steps fail.

Vijay

On Tue, Jul 22, 2014 at 7:23 PM, the lily <[email protected]> wrote:

...

Hi Everyone,

I'm trying to install moab to use it with DIY http://www.mcs.anl.gov/~tpeterka/ I tried the following commands to install moab

./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran make make check but until now I was not able to install moab and Im getting the following errors

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

and now even diy is not working and I think it is something has to do with mpi because I'm trying to run a code that include some mpi call

and I'm getting the following errors

MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in merge.o

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make: *** [merge] Error 1

I hope someone call help me to fix this

________________________________ From: [email protected] To: [email protected] CC: [email protected]; [email protected]

Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Tue, 22 Jul 2014 02:11:45 +0300

when I run config I do not get any errors but when I do make and make check I get the following

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

Thanks.

...

From: [email protected] Date: Mon, 21 Jul 2014 17:48:42 -0500 Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

The log shows that the fortran compiler is invalid in your OpenMPI installation. That is perfectly fine. We will have to disable fortran support if an appropriate compiler is not found.

Can you try again with ./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran

Let us know if configure still fails, along with config logs.

Vijay

On Mon, Jul 21, 2014 at 5:41 PM, the lily <[email protected]> wrote:

...

Hi Grindeanu,

Thank you for your help. Attached the config.log

Thank you.

________________________________ From: [email protected]

To: [email protected]; [email protected] Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Mon, 21 Jul 2014 14:12:47 +0000

what version of moab did you try? checkout a fresh clone from master ([email protected]:fathomteam/moab.git)

can you send your config.log ?

Iulian ________________________________ From: [email protected] [[email protected]] on behalf of the lily [[email protected]] Sent: Monday, July 21, 2014 3:07 AM To: [email protected] Subject: [MOAB-dev] make check returns error when installing moab

Hi everyone,

I keep getting an error when I try to install moab, here are the steps I did and the output for each step,

Step1: ./configure output:

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the HDF5 library.

* Support for native file format is disabled!

*************************************************************************

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the NetCDF library.

* Support for ExodusII/Genesis and other file formats is disabled!

*************************************************************************

Step2: make

output:

make[3]: Nothing to be done for `all-am'.

Making all in io

make[3]: Nothing to be done for `all'.

Making all in dual

make[3]: Nothing to be done for `all'.

Making all in obb

make[3]: Nothing to be done for `all'.

Making all in perf

Making all in point_location

make[4]: Nothing to be done for `all'.

make[4]: Nothing to be done for `all-am'.

Making all in dagmc

make[3]: Nothing to be done for `all'.

Making all in oldinc

make[3]: Nothing to be done for `all'.

Making all in doc

make[2]: Nothing to be done for `all'.

./config.status --version | \

sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \

tr "'" "\n" | \

sed -e '/^ *$/d' > moab.config

Step3: make check

output:

libtool: link: unrecognized option `-O2'

libtool: link: Try `libtool --help' for more information.

make[4]: *** [ScdMeshF90] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

I do not know what exactly went wrong, do I need to install any libraries before installing moab?

Thank you.

I still don't see any issues with your logs. Did make check with all the tests pass completely ? If not, send us the log of "make check | tee check.log".

ld: can't write output file: mpi_hello_world for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

How are you trying to link your simple example with MOAB ? What arguments do you pass to the linker for your example ? clang doesn't like your linker arguments. In the git repo, the example folder has a simple makefile that you can use to link your own examples after you install the build somewhere. ./configure --prefix=INSTALL_DIR --disable-fortran make check make install Create your makefile with something that resembles: #------------------------------------ # MOAB_DIR points to top-level install dir, below which MOAB's lib/ and include/ are located MOAB_DIR=<INSTALL_DIR specified to prefix> include ${MOAB_DIR}/lib/moab.make include ${MOAB_DIR}/lib/iMesh-Defs.inc .SUFFIXES: .o .cpp .F90 mpi_hello_world: mpi_hello_world.o ${MOAB_LIBDIR}/libMOAB.la ${MOAB_CXX} -o $@ $< ${MOAB_LIBS_LINK} #------------------------------------ Now you can run make mpi_hello_world and your program should link against MOAB properly. Vijay On Wed, Jul 23, 2014 at 7:44 PM, the lily <[email protected]> wrote:

Hi,

Attached the log files.

these are my steps

1- ./configure --disable-fortran 2- make all | tee make.log 3- make check

I tried running a simple mpi example it seems is not working anymore it is giving me the following

ld: can't write output file: mpi_hello_world for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make: *** [mpi_hello_world] Error 1

thanks.

...

From: [email protected] Date: Wed, 23 Jul 2014 19:33:56 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

clang is incompatible with the gfortran you have installed. The configuration and make went through fine according to your logs.Try configuring again with --disable-fortran explicitly specified.

Vijay

On Wed, Jul 23, 2014 at 7:20 PM, the lily <[email protected]> wrote:

...

Hi,

Attached the config and make log files, this is what I have done.

1- download ftp://ftp.mcs.anl.gov/pub/fathom/moab-nightly.tar.gz 2- unzip the file 3- cd moab-4.7.0pre 4- ./configure 5- make all | tee make.log 6- make check gave me the following

make[4]: DHAVE_CONFIG_H: No such file or directory

make[4]: [ScdMeshF90.o] Error 1 (ignored)

/bin/sh ../../libtool --tag=FC --mode=link -O2 -o ScdMeshF90 ScdMeshF90.o libiMesh.la ../../src/libMOAB.la -lm

libtool: link: unrecognized option `-O2'

libtool: link: Try `libtool --help' for more information.

make[4]: *** [ScdMeshF90] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

thanks.

...

From: [email protected] Date: Wed, 23 Jul 2014 18:26:29 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

You need autotools installed for your mac for autoreconf to work. If you have macports, this should be easy.

Meanwhile, you can try the nightly from here: ftp://ftp.mcs.anl.gov/pub/fathom/moab-nightly.tar.gz

Vijay

On Wed, Jul 23, 2014 at 4:52 PM, the lily <[email protected]> wrote:

...

Hi

I tried before cloning moab from the git repository but it does not have a configure file and when I run autoreconf -fi I get the following

bash: autoreconf: command not found

thanks.

...

From: [email protected] Date: Tue, 22 Jul 2014 22:19:29 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

These error messages are incomplete. Please use make check | tee make.log and send us the make logs for us to help you better. Also I notice that you are using 4.6.3.

We are on the verge of the next big release and so if you want to work off the repository directly, we can make the appropriate fixes for clang 3.3 + OSX Mavericks and push those as part of the upcoming release. We haven't tested with this combination of compiler + OS and so its been hard to replicate so far.

Use: git clone https://bitbucket.org/fathomteam/moab.git moab autoreconf -fi ./configure --options make all | tee make.log make check

Then send us your config.log, make.log and test/test-suite.log appropriately as things fail.

Vijay

On Tue, Jul 22, 2014 at 8:36 PM, the lily <[email protected]> wrote:

...

Hi Vijya,

1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct

I checked running a simple example and it is working.

2) Configure MOAB without MPI (with --disable-fortran). See if make check passes

This is what I tried ./configure --with-hdf5=/usr/local/hdf5 --disable-fortran

I get the following when I do make check

Making check in doc

make[1]: Nothing to be done for `check'.

3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again

./configure --with-mpi=/usr/local --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3 --disable-fortran

a(iMesh_MOAB.o)

_iMesh_save in libiMesh.a(iMesh_MOAB.o)

_iMesh_getEntitiesRec in libiMesh.a(iMesh_MOAB.o)

_iMesh_getVtxArrCoords in libiMesh.a(iMesh_MOAB.o)

_iMesh_getEntArrAdj in libiMesh.a(iMesh_MOAB.o)

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[1]: *** [example] Error 1

make: *** [check] Error 2

4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel

./configure --with-hdf5=/usr/local/hdf5 --enable-parallel --disable-fortran

The output of make check:

Making check in doc

make[1]: Nothing to be done for `check'.

thank you.

...

From: [email protected] Date: Tue, 22 Jul 2014 19:26:36 -0500

...

Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

Couple of things for your to check:

1) Can you check if you can run some simple MPI programs first. This will verify your MPI installation is correct 2) Configure MOAB without MPI (with --disable-fortran). See if make check passes 3) Specify the MPI installation directory when specifying --with-mpi=<MPI_DIR> and try again 4) Add HDF5 dependency -- make sure HDF5 is configured with --enable-parallel

Let us know which of these steps fail.

Vijay

On Tue, Jul 22, 2014 at 7:23 PM, the lily <[email protected]> wrote:

...

Hi Everyone,

I'm trying to install moab to use it with DIY http://www.mcs.anl.gov/~tpeterka/ I tried the following commands to install moab

./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran make make check but until now I was not able to install moab and Im getting the following errors

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

and now even diy is not working and I think it is something has to do with mpi because I'm trying to run a code that include some mpi call

and I'm getting the following errors

MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in merge.o

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make: *** [merge] Error 1

I hope someone call help me to fix this

________________________________ From: [email protected] To: [email protected] CC: [email protected]; [email protected]

Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Tue, 22 Jul 2014 02:11:45 +0300

when I run config I do not get any errors but when I do make and make check I get the following

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[4]: *** [testc_cbind] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

Thanks.

...

From: [email protected] Date: Mon, 21 Jul 2014 17:48:42 -0500 Subject: Re: [MOAB-dev] make check returns error when installing moab To: [email protected] CC: [email protected]; [email protected]

The log shows that the fortran compiler is invalid in your OpenMPI installation. That is perfectly fine. We will have to disable fortran support if an appropriate compiler is not found.

Can you try again with ./configure --with-mpi --with-hdf5=/usr/local/hdf5 --prefix=/Users/lab/Documents/Code/moab-4.6.3/bld --disable-fortran

Let us know if configure still fails, along with config logs.

Vijay

On Mon, Jul 21, 2014 at 5:41 PM, the lily <[email protected]> wrote:

...

Hi Grindeanu,

Thank you for your help. Attached the config.log

Thank you.

________________________________ From: [email protected]

To: [email protected]; [email protected] Subject: RE: [MOAB-dev] make check returns error when installing moab Date: Mon, 21 Jul 2014 14:12:47 +0000

what version of moab did you try? checkout a fresh clone from master ([email protected]:fathomteam/moab.git)

can you send your config.log ?

Iulian ________________________________ From: [email protected] [[email protected]] on behalf of the lily [[email protected]] Sent: Monday, July 21, 2014 3:07 AM To: [email protected] Subject: [MOAB-dev] make check returns error when installing moab

Hi everyone,

I keep getting an error when I try to install moab, here are the steps I did and the output for each step,

Step1: ./configure output:

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the HDF5 library.

* Support for native file format is disabled!

*************************************************************************

configure: WARNING:

*************************************************************************

* MOAB has been configured w/out the NetCDF library.

* Support for ExodusII/Genesis and other file formats is disabled!

*************************************************************************

Step2: make

output:

make[3]: Nothing to be done for `all-am'.

Making all in io

make[3]: Nothing to be done for `all'.

Making all in dual

make[3]: Nothing to be done for `all'.

Making all in obb

make[3]: Nothing to be done for `all'.

Making all in perf

Making all in point_location

make[4]: Nothing to be done for `all'.

make[4]: Nothing to be done for `all-am'.

Making all in dagmc

make[3]: Nothing to be done for `all'.

Making all in oldinc

make[3]: Nothing to be done for `all'.

Making all in doc

make[2]: Nothing to be done for `all'.

./config.status --version | \

sed -e 's/.*options "\(.*\)"/\1/p' -e 'd' | \

tr "'" "\n" | \

sed -e '/^ *$/d' > moab.config

Step3: make check

output:

libtool: link: unrecognized option `-O2'

libtool: link: Try `libtool --help' for more information.

make[4]: *** [ScdMeshF90] Error 1

make[3]: *** [check-am] Error 2

make[2]: *** [check] Error 2

make[1]: *** [check-recursive] Error 1

make: *** [check-recursive] Error 1

I do not know what exactly went wrong, do I need to install any libraries before installing moab?

Thank you.