Re: [Nek5000-users] Nek5000-users Digest, Vol 78, Issue 9
Hi, all sorry I have attached the wrong .rea file, the .rea file is renewed in this mail. To save Sorry!! On 08/29/2015 03:51 PM, Allen wrote:
Hi, Phillip
Thanks for your reply, but the dos2unix actually does not help. And I tried a lot to fix it up, including copy existing command from other examples .rea files to eliminate the error that might have something to do with the "CR and LF" stuff (I know little about these line breaks).
I am in Ubuntu, should this this be due to the failue of reading restart parameters?he
I have attached the .rea file. It would be greatly that you can have a look and give some advice.
Thanks in advance.
and have a nice weekend!
from Allen
On 08/29/2015 01:00 AM, [email protected] wrote:
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Today's Topics:
1. restart a case got an error: Error reading initial condition/drive force data ([email protected]) 2. Re: restart a case got an error: Error reading initial condition/drive force data ([email protected])
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Message: 1 Date: Fri, 28 Aug 2015 11:22:34 +0800 From: [email protected] To: [email protected] Subject: [Nek5000-users] restart a case got an error: Error reading initial condition/drive force data Message-ID: <[email protected]> Content-Type: text/plain; charset="utf-8"; Format="flowed"
Hi, Nekers:
I recently want to do some simulation with Nek, so I followed the tutorial for the eddy_uv case
I have run the case without problem, but when I want to try the restart utility with the following modification instructed by the manual -----------------------------------------------------------------------------
1 PRESOLVE/RESTART OPTIONS ***** eddy_uv0.f00010 -----------------------------------------------------------------------------
affter changing for a new case name and recompile, I started the restart run, but the logfile gives the following error : -----------------------------------------------------------------------------
mapping elements to processors 2 86 86 256 256 NELV 0 85 85 256 256 NELV 1 85 85 256 256 NELV RANK 0 IEG 133 134 135 136 149 150 151 152 161 162 165 166 167 168 177 178 179 181 182 183 184 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 element load imbalance: 1 85 86 done :: mapping elements to processors
Error reading initial condition/drive force data aborting in routine rdicdf. EXIT: rdicdf error 1
call exitt: dying ...
backtrace(): obtained 9 stack frames. ./nek5000(print_stack_+0x18) [0x500ff8] ./nek5000(exitt_+0x1cc) [0x5be5ec] ./nek5000(exitti_+0x117) [0x5c1537] ./nek5000(rdicdf_+0x1e7) [0x442387] ./nek5000(readat_+0x35f) [0x44951f] ./nek5000(nek_init_+0x75) [0x41ae25] ./nek5000(main+0x24) [0x419d84] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f26a5be276d] ./nek5000() [0x419dc9] --------------------------------------------------------------------------------------------------------------------
I have searched the post list, but I only found very vague statement of this problem:_http://lists.mcs.anl.gov/pipermail/nek5000-users/2011-October/001560.html_
Hope some one can give me some hint, I actually do exactly what the manual does, which makes me confused.
Thanks, hope it is a minor mistake.
from Allen
hi, I looked at the rea file, and I see that the whole part about boundary conditions is missing: ***** FLUID BOUNDARY CONDITIONS ***** P 1 1 241.0000 3.000000 0.0000000E+00 0.0000000E+00 0.0000000E+00 E 1 2 2.000000 4.000000 0.0000000E+00 0.0000000E+00 0.0000000E+00 E 1 3 17.00000 1.000000 0.0000000E+00 0.0000000E+00 0.0000000E+00 P 1 4 16.00000 2.000000 0.0000000E+00 0.0000000E+00 0.0000000E+00 ... This is what causes the error that you cite below. Then, the line to load the restart file should be similar to the following: 1 PRESOLVE/RESTART OPTIONS ***** eddy_uv0.f00001 Then it should work. Best regards, Philipp Quoting [email protected]:
Hi, all
sorry I have attached the wrong .rea file, the .rea file is renewed in this mail.
To save
Sorry!!
On 08/29/2015 03:51 PM, Allen wrote:
Hi, Phillip
Thanks for your reply, but the dos2unix actually does not help. And I tried a lot to fix it up, including copy existing command from other examples .rea files to eliminate the error that might have something to do with the "CR and LF" stuff (I know little about these line breaks).
I am in Ubuntu, should this this be due to the failue of reading restart parameters?he
I have attached the .rea file. It would be greatly that you can have a look and give some advice.
Thanks in advance.
and have a nice weekend!
from Allen
On 08/29/2015 01:00 AM, [email protected] wrote:
Send Nek5000-users mailing list submissions to [email protected]
To subscribe or unsubscribe via the World Wide Web, visit https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users or, via email, send a message with subject or body 'help' to [email protected]
You can reach the person managing the list at [email protected]
When replying, please edit your Subject line so it is more specific than "Re: Contents of Nek5000-users digest..."
Today's Topics:
1. restart a case got an error: Error reading initial condition/drive force data ([email protected]) 2. Re: restart a case got an error: Error reading initial condition/drive force data ([email protected])
----------------------------------------------------------------------
Message: 1 Date: Fri, 28 Aug 2015 11:22:34 +0800 From: [email protected] To: [email protected] Subject: [Nek5000-users] restart a case got an error: Error reading initial condition/drive force data Message-ID: <[email protected]> Content-Type: text/plain; charset="utf-8"; Format="flowed"
Hi, Nekers:
I recently want to do some simulation with Nek, so I followed the tutorial for the eddy_uv case
I have run the case without problem, but when I want to try the restart utility with the following modification instructed by the manual ----------------------------------------------------------------------------- 1 PRESOLVE/RESTART OPTIONS ***** eddy_uv0.f00010 ----------------------------------------------------------------------------- affter changing for a new case name and recompile, I started the restart run, but the logfile gives the following error : ----------------------------------------------------------------------------- mapping elements to processors 2 86 86 256 256 NELV 0 85 85 256 256 NELV 1 85 85 256 256 NELV RANK 0 IEG 133 134 135 136 149 150 151 152 161 162 165 166 167 168 177 178 179 181 182 183 184 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 element load imbalance: 1 85 86 done :: mapping elements to processors
Error reading initial condition/drive force data aborting in routine rdicdf. EXIT: rdicdf error 1
call exitt: dying ...
backtrace(): obtained 9 stack frames. ./nek5000(print_stack_+0x18) [0x500ff8] ./nek5000(exitt_+0x1cc) [0x5be5ec] ./nek5000(exitti_+0x117) [0x5c1537] ./nek5000(rdicdf_+0x1e7) [0x442387] ./nek5000(readat_+0x35f) [0x44951f] ./nek5000(nek_init_+0x75) [0x41ae25] ./nek5000(main+0x24) [0x419d84] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f26a5be276d] ./nek5000() [0x419dc9] -------------------------------------------------------------------------------------------------------------------- I have searched the post list, but I only found very vague statement of this problem:_http://lists.mcs.anl.gov/pipermail/nek5000-users/2011-October/001560.html_ Hope some one can give me some hint, I actually do exactly what the manual does, which makes me confused.
Thanks, hope it is a minor mistake.
from Allen
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