Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Thu Mar 22 16:41:18 2012 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --download-f-blas-lapack=1 --with-debugging=1 --with-mpi-dir=/usr/bin/ Working directory: /usr/pkg/petsc-3.2 Machine platform: ('Linux', 'Lighthill', '3.0.0-16-generic', '#28-Ubuntu SMP Fri Jan 27 17:44:39 UTC 2012', 'x86_64', 'x86_64') Python version: 2.7.2+ (default, Oct 4 2011, 20:06:09) [GCC 4.6.1] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/usr/pkg/petsc-3.2/config/BuildSystem/config/framework.py:813) TESTING: configureExternalPackagesDir from config.framework(/usr/pkg/petsc-3.2/config/BuildSystem/config/framework.py:813) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/usr/pkg/petsc-3.2/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/usr/pkg/petsc-3.2/config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/linux/Tec360/bin/gdb...not found Checking for program /usr/lib/lightdm/lightdm/gdb...not found Checking for program /usr/local/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/local/linux/Tec360/bin/dbx...not found Checking for program /usr/lib/lightdm/lightdm/dbx...not found Checking for program /usr/local/sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /home/mahesh/dbx...not found Checking for program /usr/local/linux/Tec360/bin/xdb...not found Checking for program /usr/lib/lightdm/lightdm/xdb...not found Checking for program /usr/local/sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /home/mahesh/xdb...not found Checking for program /usr/local/linux/Tec360/bin/dsymutil...not found Checking for program /usr/lib/lightdm/lightdm/dsymutil...not found Checking for program /usr/local/sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /home/mahesh/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureCMake from PETSc.utilities.CMake(/usr/pkg/petsc-3.2/config/PETSc/utilities/CMake.py:21) TESTING: configureCMake from PETSc.utilities.CMake(/usr/pkg/petsc-3.2/config/PETSc/utilities/CMake.py:21) Check various things about cmake Checking for program /usr/local/linux/Tec360/bin/cmake...not found Checking for program /usr/lib/lightdm/lightdm/cmake...not found Checking for program /usr/local/sbin/cmake...not found Checking for program /usr/local/bin/cmake...not found Checking for program /usr/sbin/cmake...not found Checking for program /usr/bin/cmake...not found Checking for program /sbin/cmake...not found Checking for program /bin/cmake...not found Checking for program /usr/games/cmake...not found Checking for program /home/mahesh/cmake...not found ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/usr/pkg/petsc-3.2/config/PETSc/utilities/languages.py:45) TESTING: configureCLanguage from PETSc.utilities.languages(/usr/pkg/petsc-3.2/config/PETSc/utilities/languages.py:45) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/usr/pkg/petsc-3.2/config/PETSc/utilities/languages.py:51) TESTING: configureLanguageSupport from PETSc.utilities.languages(/usr/pkg/petsc-3.2/config/PETSc/utilities/languages.py:51) Check c-support c++-support and other misc tests Turning off C++ support Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/usr/pkg/petsc-3.2/config/PETSc/utilities/languages.py:68) TESTING: configureExternC from PETSc.utilities.languages(/usr/pkg/petsc-3.2/config/PETSc/utilities/languages.py:68) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/usr/pkg/petsc-3.2/config/PETSc/utilities/languages.py:74) TESTING: configureFortranLanguage from PETSc.utilities.languages(/usr/pkg/petsc-3.2/config/PETSc/utilities/languages.py:74) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMake from config.programs(/usr/pkg/petsc-3.2/config/BuildSystem/config/programs.py:23) TESTING: configureMake from config.programs(/usr/pkg/petsc-3.2/config/BuildSystem/config/programs.py:23) Check various things about make Checking for program /usr/local/linux/Tec360/bin/make...not found Checking for program /usr/lib/lightdm/lightdm/make...not found Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /usr/local/linux/Tec360/bin/strings...not found Checking for program /usr/lib/lightdm/lightdm/strings...not found Checking for program /usr/local/sbin/strings...not found Checking for program /usr/local/bin/strings...not found Checking for program /usr/sbin/strings...not found Checking for program /usr/bin/strings...found Defined make macro "STRINGS" to "/usr/bin/strings" sh: /usr/bin/strings /usr/bin/make Executing: /usr/bin/strings /usr/bin/make sh: /lib64/ld-linux-x86-64.so.2 librt.so.1 __gmon_start__ _Jv_RegisterClasses clock_gettime libc.so.6 fflush strcpy __rawmemchr __printf_chk fnmatch readdir _IO_putc setlocale fopen strsignal strncmp optind strrchr wait pipe __strdup dcgettext closedir sigprocmask __stack_chk_fail __lxstat unlink realloc abort stdin _exit getpid kill __assert_fail mkstemp strtod strtol feof getloadavg fgets getpwnam calloc strlen sigemptyset memset glob strstr __errno_location chdir dup2 __fprintf_chk sigaddset ctime putenv stdout fputs lseek memcpy fclose malloc remove __strncpy_chk opendir getenv __ctype_b_loc sscanf optarg stderr alarm getlogin readlink setrlimit getopt_long execvp __fxstat __realpath_chk getcwd fwrite fread gettimeofday sigaction waitpid localtime strchr vfork __vfprintf_chk fdopen qsort __strcpy_chk __ctype_tolower_loc setvbuf fcntl __sprintf_chk bsd_signal __xstat getrlimit memmove bindtextdomain opterr strcmp strerror __libc_start_main ferror globfree __environ __cxa_atexit GLIBC_2.2.5 GLIBC_2.4 GLIBC_2.3 GLIBC_2.3.4 %za" %ra" %ja" %ba" %Za" %Ra" %Ja" %Ba" %:a" %2a" %*a" %"a" %z`" %r`" %j`" %b`" %Z`" %R`" %J`" %B`" %:`" %2`" %*`" %"`" %z_" %r_" %j_" %b_" %Z_" %R_" %J_" %B_" %:_" %2_" %*_" %"_" %z^" AWAVI AUATSH =;j" ;/t) %li" =Xn" =Se" =Pe" =Xe" GmXXXXXXL =[c" =Hc" =E]" =>]" =/a" =D\" d$PM =^[" tfE1 5nY" ~ =u1H =?U" =#U" 5rT" =AW" =OW" =3W" t/~a =hQ" fff. |$0H \$@H fffff. :)t,H t$ H ATUH []A\ AWAVI ATSH ?tVH [A\A]A^A_] AWAVAUATI T$ H D$7H [A\A]A^A_] l$7I |$0H @ "t8H u&@ [A\A]A^A_] D87u ffffff. AUATI fffff. t$ H fffff. ATUSH t$(H D$(H D$(H @[]A\ L$E1 [A\A]A^A_] AUATUS u>[]A\A]A^ t1L;% l$ L t$(L |$0H td;S fff. fff. fff. AWE1 AVE1 AUATE1 |$ H D$,D T$ H T$ D T$,E T$(D T$ D 8[]A\A]A^A_ ffff. ffff. AUATI []A\A] t0<$u []A\A] AWAVI AUATUH []A\A]A^A_ fffff. fffff. ffffff. \$HH l$PL d$XL l$`L t$hL |$pH AWAVAUATUS1 []A\A]A^A_ H;l$ 4$Mc H9l$ L94$s ffffff. fffff. AWAVAUATUSH t H; t$H=0 []A\A]A^A_ []A\A]A^A_ AWAVAUATI t$pH D$p/ D$x []A\A]A^A_ ffff. t=H9 d$ L l$(L t$0H U0fA u8E1 fffff. AVAUI ATSH $t^A <$=u <$=u (tIA [A\A]A^] D$ H D$*H \$8H l$@L d$HL l$PH ffff. AVAUATU D$(H T$ H T$ I []A\A]A^A_ T$ L T$(I T$0H AWAVAUATUSH D$(H D$ H L$ D D$ H D$(H 8[]A\A]A^A_ |$ B 8[]A\A]A^A_ t$(E1 L+t$ +tfH L9d$ ATUSH t=9r(r8H []A\A] []A\A] :/tLH []A\ ffff. ATUSH D$ H D$ H []A\A] []A\A] t$ H fff. AWAVI AUATUSH tyE1 tAH;5Z t(I9 []A\A]A^A_ l$ L d$(L l$0L t$8L |$@H l$ H d$(L l$0L t$8L |$@H ffffff. ATUH []A\A] fff. fff. D$ A\ fff. []A\ fffff. ATUSH []A\A] ffff. ATUH []A\A]H fffff. ATUH t_L9 s+f. []A\ l$ L t$(L |$0H touch: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES $(MAKE) ${MAKE} kill # commands to execute (built-in): (from `%s', line %lu): %.*s $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o .cc.o .C.o .cpp.o .f.o .p.o .F.o .r.o .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln .l.ln .y.c .l.c @$(RM) $@ $(LEX.l) $< > $@ .F.f .r.f .l.r .S.s $(PREPROCESS.S) $< > $@ .texinfo.info .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% SCCS/s.% ARFLAGS CHECKOUT,v COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi CWEAVE cweave CTANGLE ctangle rm -f LINK.o COMPILE.c LINK.c COMPILE.cc COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t COMPILE.f LINK.f COMPILE.F LINK.F COMPILE.r LINK.r COMPILE.def COMPILE.mod COMPILE.p LINK.p LINK.s COMPILE.s LINK.S COMPILE.S PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F PREPROCESS.r LINT.c OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(COMPILE.c) $(OUTPUT_OPTION) $< $(COMPILE.cc) $(OUTPUT_OPTION) $< $(COMPILE.C) $(OUTPUT_OPTION) $< $(COMPILE.cpp) $(OUTPUT_OPTION) $< $(COMPILE.f) $(OUTPUT_OPTION) $< $(COMPILE.p) $(OUTPUT_OPTION) $< $(COMPILE.F) $(OUTPUT_OPTION) $< $(COMPILE.r) $(OUTPUT_OPTION) $< $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c $(YACC.y) $< mv -f y.tab.c $@ $(PREPROCESS.F) $(OUTPUT_OPTION) $< $(PREPROCESS.r) $(OUTPUT_OPTION) $< $(LEX.l) $< > $@ mv -f lex.yy.r $@ $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) $(CC) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) # Directories # %s: could not be stat'd. files, impossibilities so far. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' file.c *name != '\0' .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d # Not a target: %s:%s | %s # Command-line target. # Also makes: # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Successfully updated. question_flag # Failed to be updated. Current time # Files # files hash-table stats: Commands were specified for file `%s' at %s:%lu, Commands for file `%s' were found by implicit rule search, but `%s' is now considered the same file as `%s'. Commands for `%s' will be ignored in favor of those for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Modification time never checked. # Commands currently running (THIS IS A BUG). # Dependencies commands running (THIS IS A BUG). # Needs to be updated (-q is set). # Invalid value in `update_status' member! %s: Timestamp out of range; substituting %s lookup_file enter_file print_file undefined default environment environment override command line automatic basename addprefix %s:%lu: recursive simple filter %s: '%s' abspath addsuffix notdir filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard wordlist words origin foreach call warning value eval Internal error: func_error: '%s' Cleaning up temporary batch file %s insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 unterminated call to function `%s': missing `%c' Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible implicit prerequisite `%s'. Rejecting impossible rule prerequisite `%s'. Trying implicit prerequisite `%s'. Trying rule prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child 0x%08lx (%s) but no tokens left! Released token for child 0x%08lx (%s). %s (line %d) Bad shell context (!unixy && !batch_mode_shell) cannot enforce load limits on this operating system Estimated system load = %f (actual = %f) (max requested = %f) Putting child 0x%08lx (%s) PID %ld%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child 0x%08lx (%s) PID %ld %s Reaping losing child 0x%08lx PID %ld %s Reaping winning child 0x%08lx PID %ld %s Cleaning up temp batch file %s Removing child 0x%08lx PID %ld%s from chain. Need a job token; we %shave children INTERNAL: no children as we go to sleep on read Obtained token for child 0x%08lx (%s). write jobserver job.c ap <= end [%s] Error %d (ignored) *** [%s] Error %d (core dumped) *** [%s] %s%s %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(IFS) /bin/sh vfork cannot enforce load limit: getloadavg (remote) remote_status wait .DELETE_ON_ERROR don't Duplicate the job FD read jobs pipe Read returned EBADF. break case continue exec exit login logout read readonly shift switch test trap umask while start_waiting_job construct_command_argv_internal %sThis program built for %s write MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering directory `%s' %s: Leaving directory `%s' This program built for %s /tmp /usr/share/locale getcwd .VARIABLES .FEATURES archives check-symlink MAKE_RESTARTS MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL %d,%d dup jobserver creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' was not found chdir Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u main.c unlink (temporary file): No targets Updating goal targets.... always-make basic debug environment-overrides help ignore-errors include-dir jobs jobserver-fds load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch version no-print-directory what-if warn-undefined-variables quiet stop new-file assume-new assume-old max-load dry-run recon Options: %sGNU Make %s %sCopyright (C) 2006 Free Software Foundation, Inc. %sThis is free software; see the source for copying conditions. %sThere is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A %sPARTICULAR PURPOSE. %sThis program built for %s (%s) # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name %s: Entering an unknown directory %s: Leaving an unknown directory %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `-%c' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s (%s) Report bugs to target-specific order-only second-expansion else-if unknown debug level specification `%s' Makefile from standard input specified twice. internal error: multiple --jobserver-fds options internal error: invalid --jobserver-fds string `%s' warning: -jN forced in submake: disabling jobserver mode. warning: jobserver unavailable: using -j1. Add `+' to parent make rule. Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. .DEFAULT_GOAL contains more than one target No targets specified and no makefile found warning: Clock skew detected. Your build may be incomplete. Couldn't change back to original directory. -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from commands. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any commands; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no commands; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo commands. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. main $(-*-command-variables-*-) %s: %s[%u]: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s virtual memory exhausted write error: %s write error warning: NUL character seen; rest of line ignored Extraneous text after `endef' directive missing `endef', unterminated `define' Extraneous text after `%s' directive only one `else' per conditional prerequisites cannot be defined in command scripts mixed implicit and static pattern rules mixed implicit and normal rules target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding commands for target `%s' warning: ignoring old commands for target `%s' commands commence before first target (did you mean TAB instead of 8 spaces?) Malformed target-specific variable definition target pattern contains no `%%' define endef ifdef ifndef ifeq ifneq else endif extraneous `%s' .POSIX .SECONDEXPANSION $(HOME) HOME /usr/include .INCLUDE_DIRS invalid syntax in conditional extraneous `endef' empty variable name empty `override' directive invalid `override' directive unexport vpath -include sinclude missing rule before commands missing separator%s read.c *p2 != '\0' v != 0 missing target pattern multiple target patterns missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) GNUmakefile Makefile /usr/gnu/include /usr/local/include eval record_target_var lstat: readlink: $(strip $(.LIBPATTERNS)) %s/%s touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. remake.c Nothing to be done for `%s'. `%s' is up to date. /usr/lib/x86_64-linux-gnu /usr/lib /usr/local/lib %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s .LIBPATTERNS element `%s' is not a pattern Warning: File `%s' has modification time %.2g s in the future Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default commands for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No commands for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. Commands of `%s' are being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 update_file_1 A(%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules wrong! %u != %u Y@strcache.c best->bytesfree > len %s # of strcache buffers: %d %s # of strings in strcache: %d %s strcache size: total = %d / max = %d / min = %d / avg = %d %s strcache free: total = %d / max = %d / min = %d / avg = %d add_string environment under -e (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) variable.c %s%s%s MAKE_VERSION MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) # Variables %s : pop_variable_scope current_variable_set_list->next != ((void *)0) # variable set hash-table stats: # Pattern-specific Variable Values # %u pattern-specific variable values # No pattern-specific variable values. x86_64-pc-linux-gnu 3.81 $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %ld bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el /bin/sh #;"*?[]&|<>(){}$`^~! -c Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} module multiprocessing found: using make_np =5 Defined make macro "MAKE_NP" to "5" ================================================================================ TEST configureMkdir from config.programs(/usr/pkg/petsc-3.2/config/BuildSystem/config/programs.py:99) TESTING: configureMkdir from config.programs(/usr/pkg/petsc-3.2/config/BuildSystem/config/programs.py:99) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/linux/Tec360/bin/mkdir...not found Checking for program /usr/lib/lightdm/lightdm/mkdir...not found Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /sbin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/usr/pkg/petsc-3.2/config/BuildSystem/config/programs.py:121) TESTING: configurePrograms from config.programs(/usr/pkg/petsc-3.2/config/BuildSystem/config/programs.py:121) Check for the programs needed to build and run PETSc Checking for program /usr/local/linux/Tec360/bin/sh...not found Checking for program /usr/lib/lightdm/lightdm/sh...not found Checking for program /usr/local/sbin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/local/linux/Tec360/bin/sed...not found Checking for program /usr/lib/lightdm/lightdm/sed...not found Checking for program /usr/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /sbin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" All intermediate test results are stored in /tmp/petsc-jZ4A3c All intermediate test results are stored in /tmp/petsc-jZ4A3c/config.programs sh: /bin/sed -i s/sed/sd/g "/tmp/petsc-jZ4A3c/config.programs/sed1" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-jZ4A3c/config.programs/sed1" sh: Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /usr/local/linux/Tec360/bin/mv...not found Checking for program /usr/lib/lightdm/lightdm/mv...not found Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/local/linux/Tec360/bin/cp...not found Checking for program /usr/lib/lightdm/lightdm/cp...not found Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/local/linux/Tec360/bin/grep...not found Checking for program /usr/lib/lightdm/lightdm/grep...not found Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /sbin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /usr/local/linux/Tec360/bin/rm...not found Checking for program /usr/lib/lightdm/lightdm/rm...not found Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/local/linux/Tec360/bin/diff...not found Checking for program /usr/lib/lightdm/lightdm/diff...not found Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found sh: "/usr/bin/diff" -w "/tmp/petsc-jZ4A3c/config.programs/diff1" "/tmp/petsc-jZ4A3c/config.programs/diff2" Executing: "/usr/bin/diff" -w "/tmp/petsc-jZ4A3c/config.programs/diff1" "/tmp/petsc-jZ4A3c/config.programs/diff2" sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/mahesh/ps...not found Checking for program /usr/local/linux/Tec360/bin/gzip...not found Checking for program /usr/lib/lightdm/lightdm/gzip...not found Checking for program /usr/local/sbin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/sbin/gzip...not found Checking for program /usr/bin/gzip...not found Checking for program /sbin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMercurial from config.sourceControl(/usr/pkg/petsc-3.2/config/BuildSystem/config/sourceControl.py:23) TESTING: configureMercurial from config.sourceControl(/usr/pkg/petsc-3.2/config/BuildSystem/config/sourceControl.py:23) Find the Mercurial executable Checking for program /usr/local/linux/Tec360/bin/hg...not found Checking for program /usr/lib/lightdm/lightdm/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" sh: hg version -q Executing: hg version -q sh: Mercurial Distributed SCM (version 1.9.1) ================================================================================ TEST configureCVS from config.sourceControl(/usr/pkg/petsc-3.2/config/BuildSystem/config/sourceControl.py:34) TESTING: configureCVS from config.sourceControl(/usr/pkg/petsc-3.2/config/BuildSystem/config/sourceControl.py:34) Find the CVS executable Checking for program /usr/local/linux/Tec360/bin/cvs...not found Checking for program /usr/lib/lightdm/lightdm/cvs...not found Checking for program /usr/local/sbin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /usr/sbin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /sbin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/games/cvs...not found Checking for program /home/mahesh/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/usr/pkg/petsc-3.2/config/BuildSystem/config/sourceControl.py:43) TESTING: configureSubversion from config.sourceControl(/usr/pkg/petsc-3.2/config/BuildSystem/config/sourceControl.py:43) Find the Subversion executable Checking for program /usr/local/linux/Tec360/bin/svn...not found Checking for program /usr/lib/lightdm/lightdm/svn...not found Checking for program /usr/local/sbin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /usr/sbin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" sh: svn --version -q Executing: svn --version -q sh: 1.6.12 ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/usr/pkg/petsc-3.2/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(/usr/pkg/petsc-3.2/config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 2 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 7 #define PETSC_VERSION_DATE "Sep, 8, 2011" #define PETSC_VERSION_PATCH_DATE "unknown" #define PETSC_VERSION_HG "unknown" #define PETSC_VERSION_DATE_HG "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/usr/pkg/petsc-3.2" Defined "DIR" to ""/usr/pkg/petsc-3.2"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/usr/pkg/petsc-3.2/config/PETSc/utilities/petscdir.py:75) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/usr/pkg/petsc-3.2/config/PETSc/utilities/petscdir.py:75) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/usr/pkg/petsc-3.2/config/PETSc/utilities/petscdir.py:82) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/usr/pkg/petsc-3.2/config/PETSc/utilities/petscdir.py:82) This is a Mercurial clone Defined "VERSION_HG" to ""e7023ed1205ee115f9a27391097268d128e0e72b"" Defined "VERSION_DATE_HG" to ""Mon Mar 19 20:04:09 2012 -0500"" Defined "VERSION_BS_HG" to ""0384f79c5495ad797499c3b43509f9e9c736a8b8"" Defined "VERSION_BS_DATE_HG" to ""Sun Dec 18 13:20:25 2011 -0600"" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/usr/pkg/petsc-3.2/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/usr/pkg/petsc-3.2/config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise WARNING: ETags files have not been created Checking for program /usr/local/linux/Tec360/bin/etags...not found Checking for program /usr/lib/lightdm/lightdm/etags...not found Checking for program /usr/local/sbin/etags...not found Checking for program /usr/local/bin/etags...not found Checking for program /usr/sbin/etags...not found Checking for program /usr/bin/etags...not found Checking for program /sbin/etags...not found Checking for program /bin/etags...not found Checking for program /usr/games/etags...not found Checking for program /home/mahesh/etags...not found Checking for program /usr/pkg/petsc-3.2/bin/win32fe/etags...not found The etags command is not in your path, cannot build etags files ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/usr/pkg/petsc-3.2/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/usr/pkg/petsc-3.2/config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST resetEnvCompilers from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:1465) TESTING: resetEnvCompilers from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:1465) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:1445) TESTING: checkMPICompilerOverride from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:1445) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST checkVendor from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:377) TESTING: checkVendor from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:377) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:387) TESTING: checkInitialFlags from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:387) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:501) TESTING: checkCCompiler from config.setCompilers(/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py:501) Locate a functional C compiler sh: mpicc --help Executing: mpicc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /usr/local/linux/Tec360/bin/mpicc...not found Checking for program /usr/lib/lightdm/lightdm/mpicc...not found Checking for program /usr/local/sbin/mpicc...not found Checking for program /usr/local/bin/mpicc...not found Checking for program /usr/sbin/mpicc...not found Checking for program /usr/bin/mpicc...found Defined make macro "CC" to "mpicc" Pushing language C All intermediate test results are stored in /tmp/petsc-jZ4A3c/config.setCompilers sh: mpicc -c -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o -I/tmp/petsc-jZ4A3c/config.setCompilers /tmp/petsc-jZ4A3c/config.setCompilers/conftest.c Executing: mpicc -c -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o -I/tmp/petsc-jZ4A3c/config.setCompilers /tmp/petsc-jZ4A3c/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: mpicc -c -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o -I/tmp/petsc-jZ4A3c/config.setCompilers /tmp/petsc-jZ4A3c/config.setCompilers/conftest.c Executing: mpicc -c -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o -I/tmp/petsc-jZ4A3c/config.setCompilers /tmp/petsc-jZ4A3c/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: mpicc -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o Executing: mpicc -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o sh: sh: mpicc -c -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o -I/tmp/petsc-jZ4A3c/config.setCompilers /tmp/petsc-jZ4A3c/config.setCompilers/conftest.c Executing: mpicc -c -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o -I/tmp/petsc-jZ4A3c/config.setCompilers /tmp/petsc-jZ4A3c/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: mpicc -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o Executing: mpicc -o /tmp/petsc-jZ4A3c/config.setCompilers/conftest /tmp/petsc-jZ4A3c/config.setCompilers/conftest.o sh: ERROR while running executable: /tmp/petsc-jZ4A3c/config.setCompilers/conftest is not executablesh: mpicc --help Executing: mpicc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={target|optimizers|warnings|params|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Popping language C ******************************************************************************* UNABLE to EXECUTE BINARIES for ./configure ------------------------------------------------------------------------------- Cannot run executables created with C. If this machine uses a batch system to submit jobs you will need to configure using ./configure with the additional option --with-batch. Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers? ******************************************************************************* File "./config/configure.py", line 283, in petsc_configure framework.configure(out = sys.stdout) File "/usr/pkg/petsc-3.2/config/BuildSystem/config/framework.py", line 925, in configure child.configure() File "/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py", line 1480, in configure self.executeTest(self.checkCCompiler) File "/usr/pkg/petsc-3.2/config/BuildSystem/config/base.py", line 115, in executeTest ret = apply(test, args,kargs) File "/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py", line 508, in checkCCompiler self.checkCompiler('C') File "/usr/pkg/petsc-3.2/config/BuildSystem/config/setCompilers.py", line 424, in checkCompiler raise OSError(msg)