Fwd: [petsc-maint #124771] bug report

19 Jul 2012


      Satish,

     Is there anyway to change the configuration of petsc-maint so that when developers respond it doesn't go directly to the user but instead goes back to the petsc-maint server, it strips out the individual developers email address and then forwards on to the user?

    Barry


Begin forwarded message:
...
From: Barry Smith <[email protected]>
Date: July 19, 2012 5:04:14 PM CDT
To: Zahra Seifollahi <[email protected]>, "[email protected] Balay" <[email protected]>
Subject: Re: [petsc-maint #124771] bug report
NEVER NEVER NEVER send petsc-maint email to individual petsc-developers; we have deadlines too. Always make sure it is sent to [email protected]
Barry
On Jul 19, 2012, at 3:50 PM, Zahra Seifollahi wrote:
...
why do I get this? I'm terribly sorry for asking a lot, but my dead line is really soon and I don't have enough time for studying every thing. help me please.
I also attached my program, I would be really grateful if you check it.
$ /packages/petsc-3.3-p1/win32-gnu/bin/mpiexec -bootstrap fork -n 1 ./ex2
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Object is in wrong state!
[0]PETSC ERROR: Not for unassembled matrix!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./ex2 on a win32-gnu named ZAHRA-VAIO by Zahra Fri Jul 20 01:08:40 2012
[0]PETSC ERROR: Libraries linked from /packages/petsc-3.3-p1/win32-gnu/lib
[0]PETSC ERROR: Configure run at Wed Jul 11 23:45:53 2012
[0]PETSC ERROR: Configure options PETSC_ARCH=win32-gnu --with-cc=gcc --with-cxx=g++ --with-fc=0 --with-clanguage=cxx --download-f2cblaslapack=1 --download-mpich=1 --download-parmetis=1 --downloa
d-boost=1 --download-metis=1 --useThreads=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetOrdering() line 192 in /packages/petsc-3.3-p1/src/mat/order/sorder.c
[0]PETSC ERROR: PCSetup_ICC() line 14 in /packages/petsc-3.3-p1/src/ksp/pc/impls/factor/icc/icc.c
[0]PETSC ERROR: PCSetUp() line 832 in /packages/petsc-3.3-p1/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: KSPSetUp() line 278 in /packages/petsc-3.3-p1/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: main() line 479 in src/ksp/ksp/examples/tutorials/ex2.c
application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0
and also
$ /packages/petsc-3.3-p1/win32-gnu/bin/mpiexec -bootstrap fork -n 2 ./ex2 -mat_view
Matrix Object: 1 MPI processes
 type: mpiaij
row 0: (0, 0)  (1, 1)  (2, 1)
row 1: (0, 0)  (1, 0)  (2, 1)
row 2: (0, 0)  (1, 0)  (2, 0)
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: No support for this operation for this object type!
[0]PETSC ERROR: Only local values currently supported!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./ex2 on a win32-gnu named ZAHRA-VAIO by Zahra Fri Jul 20 01:13:49 2012
[0]PETSC ERROR: Libraries linked from /packages/petsc-3.3-p1/win32-gnu/lib
[0]PETSC ERROR: Configure run at Wed Jul 11 23:45:53 2012
[0]PETSC ERROR: Configure options PETSC_ARCH=win32-gnu --with-cc=gcc --with-cxx=g++ --with-fc=0 --with-clanguage=cxx --download-f2cblaslapack=1 --download-mpich=1 --download-parmetis=1 --downloa
d-boost=1 --download-metis=1 --useThreads=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetValues_MPIAIJ() line 598 in /packages/petsc-3.3-p1/src/mat/impls/aij/mpi/mpiaij.c
[0]PETSC ERROR: MatGetValues() line 1602 in /packages/petsc-3.3-p1/src/mat/interface/matrix.c
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: No support for this operation for this object type!
[0]PETSC ERROR: Only local values currently supported!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
....
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Object is in wrong state!
[0]PETSC ERROR: Not for unassembled matrix!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./ex2 on a win32-gnu named ZAHRA-VAIO by Zahra Fri Jul 20 01:13:49 2012
[0]PETSC ERROR: Libraries linked from /packages/petsc-3.3-p1/win32-gnu/lib
[0]PETSC ERROR: Configure run at Wed Jul 11 23:45:53 2012
[0]PETSC ERROR: Configure options PETSC_ARCH=win32-gnu --with-cc=gcc --with-cxx=g++ --with-fc=0 --with-clanguage=cxx --download-f2cblaslapack=1 --download-mpich=1 --download-parmetis=1 --downloa
d-boost=1 --download-metis=1 --useThreads=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatGetDiagonalBlock() line 91 in /packages/petsc-3.3-p1/src/mat/interface/matrix.c
[0]PETSC ERROR: PCSetUp_BJacobi() line 130 in /packages/petsc-3.3-p1/src/ksp/pc/impls/bjacobi/bjacobi.c
[0]PETSC ERROR: PCSetUp() line 832 in /packages/petsc-3.3-p1/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: KSPSetUp() line 278 in /packages/petsc-3.3-p1/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: main() line 479 in src/ksp/ksp/examples/tutorials/ex2.c
application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 73) - process 0
how can I handle these problems?
On Fri, Jul 20, 2012 at 12:58 AM, Zahra Seifollahi <[email protected]> wrote:
that error is ok now
On Fri, Jul 20, 2012 at 12:36 AM, Zahra Seifollahi <[email protected]> wrote:
I used  MatDuplicate and it's ok now, but again I've got this:
$ /packages/petsc-3.3-p1/win32-gnu/bin/mpiexec -bootstrap fork -n 1 ./ex2
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Argument out of range!
[0]PETSC ERROR: Invalid stage -1 should be in [0,1)!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./ex2 on a win32-gnu named ZAHRA-VAIO by Zahra Fri Jul 20 00:33:01 2012
[0]PETSC ERROR: Libraries linked from /packages/petsc-3.3-p1/win32-gnu/lib
[0]PETSC ERROR: Configure run at Wed Jul 11 23:45:53 2012
[0]PETSC ERROR: Configure options PETSC_ARCH=win32-gnu --with-cc=gcc --with-cxx=g++ --with-fc=0 --with-clanguage=cxx --download-f2cblaslapack=1 --download-mpich=1 --download-parmetis=1 --downloa
d-boost=1 --download-metis=1 --useThreads=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PetscStageLogGetClassPerfLog() line 353 in /packages/petsc-3.3-p1/src/sys/plog/utils/stageLog.c
[0]PETSC ERROR: PetscLogObjCreateDefault() line 309 in /packages/petsc-3.3-p1/src/sys/plog/utils/classLog.c
[0]PETSC ERROR: MatCreate() line 74 in /packages/petsc-3.3-p1/src/mat/utils/gcreate.c
[0]PETSC ERROR: MatDuplicate_SeqAIJ() line 3868 in /packages/petsc-3.3-p1/src/mat/impls/aij/seq/aij.c
[0]PETSC ERROR: MatDuplicate() line 3963 in /packages/petsc-3.3-p1/src/mat/interface/matrix.c
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Null argument, when expecting valid pointer!
[0]PETSC ERROR: Null Object: Parameter # 1!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49 CDT 2012
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./ex2 on a win32-gnu named ZAHRA-VAIO by Zahra Fri Jul 20 00:33:01 2012
[0]PETSC ERROR: Libraries linked from /packages/petsc-3.3-p1/win32-gnu/lib
[0]PETSC ERROR: Configure run at Wed Jul 11 23:45:53 2012
[0]PETSC ERROR: Configure options PETSC_ARCH=win32-gnu --with-cc=gcc --with-cxx=g++ --with-fc=0 --with-clanguage=cxx --download-f2cblaslapack=1 --download-mpich=1 --download-parmetis=1 --downloa
d-boost=1 --download-metis=1 --useThreads=0
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: MatSetUp() line 630 in /packages/petsc-3.3-p1/src/mat/interface/matrix.c
[0]PETSC ERROR: main() line 352 in src/ksp/ksp/examples/tutorials/ex2.c
application called MPI_Abort(MPI_COMM_WORLD, 85) - process 0
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 85) - process 0
I don't know what is about! wouldn't these errors finish?!
On Fri, Jul 20, 2012 at 12:29 AM, Zahra Seifollahi <[email protected]> wrote:
I need a copy of K matrix with all of these elements, should I use  MatDuplicate()?
On Thu, Jul 19, 2012 at 11:49 PM, Barry Smith <[email protected]> wrote:
You need to create and setup the second matrix before copying into it. That is kk must be a valid matrix. Are you sure you do not want MatDuplicate()?
On Jul 19, 2012, at 2:08 PM, Zahra Seifollahi wrote:
...
thank you. And then what's wrong with this?
*[0]PETSC ERROR: --------------------- Error Message
------------------------------------*
*[0]PETSC ERROR: Invalid argument!*
*[0]PETSC ERROR: Wrong type of object: Parameter # 2!*
*[0]PETSC ERROR:
------------------------------------------------------------------------*
*[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49
CDT 2012*
*[0]PETSC ERROR: See docs/changes/index.html for recent updates.*
*[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.*
*[0]PETSC ERROR: See docs/index.html for manual pages.*
*[0]PETSC ERROR:
------------------------------------------------------------------------*
*[0]PETSC ERROR: ./ex2 on a win32-gnu named ZAHRA-VAIO by Zahra Thu Jul 19
23:34:11 2012*
*[0]PETSC ERROR: Libraries linked from /packages/petsc-3.3-p1/win32-gnu/lib*
*[0]PETSC ERROR: Configure run at Wed Jul 11 23:45:53 2012*
*[0]PETSC ERROR: Configure options PETSC_ARCH=win32-gnu --with-cc=gcc
--with-cxx=g++ --with-fc=0 --with-clanguage=cxx --download-f2cblaslapack=1
--download-mpich=1 --download-parmetis=1 --downloa*
*d-boost=1 --download-metis=1 --useThreads=0*
*[0]PETSC ERROR:
------------------------------------------------------------------------*
*[0]PETSC ERROR: MatCopy() line 3614 in
/packages/petsc-3.3-p1/src/mat/interface/matrix.c*
*[0]PETSC ERROR: --------------------- Error Message
------------------------------------*
*[0]PETSC ERROR: Invalid argument!*
*[0]PETSC ERROR: Wrong type of object: Parameter # 1!*
*[0]PETSC ERROR:
------------------------------------------------------------------------*
*[0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49
CDT 2012*
*[0]PETSC ERROR: See docs/changes/index.html for recent updates.*
*[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.*
*[0]PETSC ERROR: See docs/index.html for manual pages.*
*[0]PETSC ERROR:
------------------------------------------------------------------------*
*[0]PETSC ERROR: ./ex2 on a win32-gnu named ZAHRA-VAIO by Zahra Thu Jul 19
23:34:11 2012*
*[0]PETSC ERROR: Libraries linked from /packages/petsc-3.3-p1/win32-gnu/lib*
*[0]PETSC ERROR: Configure run at Wed Jul 11 23:45:53 2012*
*[0]PETSC ERROR: Configure options PETSC_ARCH=win32-gnu --with-cc=gcc
--with-cxx=g++ --with-fc=0 --with-clanguage=cxx --download-f2cblaslapack=1
--download-mpich=1 --download-parmetis=1 --downloa*
*d-boost=1 --download-metis=1 --useThreads=0*
*[0]PETSC ERROR:
------------------------------------------------------------------------*
*[0]PETSC ERROR: MatSetUp() line 630 in
/packages/petsc-3.3-p1/src/mat/interface/matrix.c*
*[0]PETSC ERROR: main() line 352 in src/ksp/ksp/examples/tutorials/ex2.c*
*application called MPI_Abort(MPI_COMM_WORLD, 62) - process 0*
*[cli_0]: aborting job:*
*application called MPI_Abort(MPI_COMM_WORLD, 62) - process 0*
*
*
I copied K matrix into K matrix  in my program by this command:
ierr = MatCopy(K,KK,SAME_NONZERO_PATTERN);
Is it ok then?
and I've got this during making:
*ex2.c:348:52: warning: ?KK? may be used uninitialized in this function*
On Thu, Jul 19, 2012 at 11:07 PM, Barry Smith <[email protected]> wrote:
...
It only needs to be called once for each Mat.
Barry
On Jul 19, 2012, at 1:12 PM, Zahra Seifollahi wrote:
...
Actually I've done, should I call it before all setting values in the
matrix or just one time?
On Thu, Jul 19, 2012 at 10:35 PM, Barry Smith <[email protected]>
wrote:
You need to call either MatSetUp() or
http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatXAIJSetPr... before setting values in the matrix.
This was a change introduced into petsc-3.3
Barry
On Jul 19, 2012, at 12:36 PM, Zahra Seifollahi wrote:
...
Hello.
I've written a program based on petsc but when I tried to run this
program
I've got this error:
*ackages/petsc-3.3-p1/win32-gnu/bin/mpiexec -bootstrap fork -n 1 ./ex2
-mat_type mpiaij*
*ETSC ERROR: --------------------- Error Message
------------------------------------*
*ETSC ERROR: Object is in wrong state!*
*ETSC ERROR: Mat object's type is not set: Argument # 1!*
*ETSC ERROR:
------------------------------------------------------------------------*
...
*ETSC ERROR: Petsc Release Version 3.3.0, Patch 1, Fri Jun 15 09:30:49
CDT
2012*
*ETSC ERROR: See docs/changes/index.html for recent updates.*
*ETSC ERROR: See docs/faq.html for hints about trouble shooting.*
*ETSC ERROR: See docs/index.html for manual pages.*
*ETSC ERROR:
------------------------------------------------------------------------*
...
*ETSC ERROR: ./ex2 on a win32-gnu named ZAHRA-VAIO by Zahra Thu Jul 19
22:02:55 2012*
*ETSC ERROR: Libraries linked from
/packages/petsc-3.3-p1/win32-gnu/lib*
*ETSC ERROR: Configure run at Wed Jul 11 23:45:53 2012*
*ETSC ERROR: Configure options PETSC_ARCH=win32-gnu --with-cc=gcc
--with-cxx=g++ --with-fc=0 --with-clanguage=cxx
--download-f2cblaslapack=1
--download-mpich=1 --download-parmetis=1 --downloa*
*ost=1 --download-metis=1 --useThreads=0*
*ETSC ERROR:
------------------------------------------------------------------------*
...
*ETSC ERROR: MatSetValues() line 988 in
/packages/petsc-3.3-p1/src/mat/interface/matrix.c*
*ETSC ERROR: main() line 129 in src/ksp/ksp/examples/tutorials/ex2.c*
*ication called MPI_Abort(MPI_COMM_WORLD, 73) - process 0*
*_0]: aborting job:*
*ication called MPI_Abort(MPI_COMM_WORLD, 73) - process 0 *
What's wrong with it? What should I do to figure out this problem?
help me
please.
--
Zahra Seifollahi
KNTU University of Technology
Aerospace engineering
--
Zahra Seifollahi
KNTU University of Technology
Aerospace engineering
--
Zahra Seifollahi
KNTU University of Technology
Aerospace engineering
-- 
Zahra Seifollahi
KNTU University of Technology
Aerospace engineering
-- 
Zahra Seifollahi
KNTU University of Technology
Aerospace engineering
-- 
Zahra Seifollahi
KNTU University of Technology
Aerospace engineering
-- 
Zahra Seifollahi
KNTU University of Technology
Aerospace engineering
<ex2.c>

Barry Smith

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