Petsc "make test" have more failures for --with-openmp=1
Hi, It all started when I wanted to test PETSC/CUDA compatibility for our code. I had to activate --with-openmp to configure with --with-cuda=1 successfully. I then saw that PETSC_HAVE_OPENMP is used at least in MUMPS (and some other places). So, I configured and tested petsc with openmp activated, without CUDA. The first thing I see is that our code CI pipelines now fails for many tests. After looking deeper, it seems that PETSc itself fails many tests when I activate openmp! Here are all the configurations I have results for, after/before activating OpenMP for PETSc: ============================================================================== ============================================================================== For petsc/master + OpenMPI 4.0.4 + MKL 2019.4.243: With OpenMP=1 https://giref.ulaval.ca/~cmpgiref/petsc-master-debug/2021.03.02.02h00m02s_ma... https://giref.ulaval.ca/~cmpgiref/petsc-master-debug/2021.03.02.02h00m02s_co... # ------------- # Summary # ------------- # FAILED snes_tutorials-ex12_quad_hpddm_reuse_baij diff-ksp_ksp_tests-ex33_superlu_dist_2 diff-ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-0_conv-0 diff-ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-0_conv-1 diff-ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-1_conv-0 diff-ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-1_conv-1 diff-ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-0_conv-0 diff-ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-0_conv-1 diff-ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-1_conv-0 diff-ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-1_conv-1 ksp_ksp_tutorials-ex50_tut_2 diff-ksp_ksp_tests-ex33_superlu_dist diff-snes_tutorials-ex56_hypre snes_tutorials-ex17_3d_q3_trig_elas snes_tutorials-ex12_quad_hpddm_reuse_threshold_baij ksp_ksp_tutorials-ex5_superlu_dist_3 ksp_ksp_tutorials-ex5f_superlu_dist snes_tutorials-ex12_tri_parmetis_hpddm_baij diff-snes_tutorials-ex19_tut_3 mat_tests-ex242_3 snes_tutorials-ex17_3d_q3_trig_vlap ksp_ksp_tutorials-ex5f_superlu_dist_3 snes_tutorials-ex19_superlu_dist diff-snes_tutorials-ex56_attach_mat_nearnullspace-1_bddc_approx_hypre diff-ksp_ksp_tutorials-ex49_hypre_nullspace ts_tutorials-ex18_p1p1_xper_ref ts_tutorials-ex18_p1p1_xyper_ref snes_tutorials-ex19_superlu_dist_2 ksp_ksp_tutorials-ex5_superlu_dist_2 diff-snes_tutorials-ex56_attach_mat_nearnullspace-0_bddc_approx_hypre ksp_ksp_tutorials-ex64_1 ksp_ksp_tutorials-ex5_superlu_dist ksp_ksp_tutorials-ex5f_superlu_dist_2 # success 8275/10003 tests (82.7%) #*failed 33/10003* tests (0.3%) With OpenMP=0 https://giref.ulaval.ca/~cmpgiref/petsc-master-debug/2021.02.26.02h00m16s_ma... https://giref.ulaval.ca/~cmpgiref/petsc-master-debug/2021.02.26.02h00m16s_co... # ------------- # Summary # ------------- # FAILED tao_constrained_tutorials-tomographyADMM_6 snes_tutorials-ex17_3d_q3_trig_elas mat_tests-ex242_3 snes_tutorials-ex17_3d_q3_trig_vlap tao_leastsquares_tutorials-tomography_1 tao_constrained_tutorials-tomographyADMM_5 # success 8262/9983 tests (82.8%) #*failed 6/9983* tests (0.1%) ============================================================================== ============================================================================== For OpenMPI 3.1.x/master: With OpenMP=1: https://giref.ulaval.ca/~cmpgiref/ompi_3.x/2021.03.01.22h00m01s_make_test.lo... https://giref.ulaval.ca/~cmpgiref/ompi_3.x/2021.03.01.22h00m01s_configure.lo... # ------------- # Summary # ------------- # FAILED mat_tests-ex242_3 mat_tests-ex242_2 diff-mat_tests-ex219f_1 diff-dm_tutorials-ex11f90_1 ksp_ksp_tutorials-ex5_superlu_dist_3 diff-ksp_ksp_tutorials-ex49_hypre_nullspace ksp_ksp_tutorials-ex5f_superlu_dist_3 snes_tutorials-ex17_3d_q3_trig_vlap diff-snes_tutorials-ex56_attach_mat_nearnullspace-1_bddc_approx_hypre diff-snes_tutorials-ex19_tut_3 diff-snes_tutorials-ex56_hypre diff-snes_tutorials-ex56_attach_mat_nearnullspace-0_bddc_approx_hypre tao_leastsquares_tutorials-tomography_1 tao_constrained_tutorials-tomographyADMM_4 tao_constrained_tutorials-tomographyADMM_6 diff-tao_constrained_tutorials-toyf_1 # success 8142/9765 tests (83.4%) #*failed 16/9765* tests (0.2%) With OpenMP=0: https://giref.ulaval.ca/~cmpgiref/ompi_3.x/2021.02.28.22h00m02s_make_test.lo... https://giref.ulaval.ca/~cmpgiref/ompi_3.x/2021.02.28.22h00m02s_configure.lo... # ------------- # Summary # ------------- # FAILED mat_tests-ex242_3 mat_tests-ex242_2 diff-mat_tests-ex219f_1 diff-dm_tutorials-ex11f90_1 ksp_ksp_tutorials-ex56_2 snes_tutorials-ex17_3d_q3_trig_vlap tao_leastsquares_tutorials-tomography_1 tao_constrained_tutorials-tomographyADMM_4 diff-tao_constrained_tutorials-toyf_1 # success 8151/9767 tests (83.5%) #*failed 9/9767* tests (0.1%) ============================================================================== ============================================================================== For OpenMPI 4.0.x/master: With OpenMP=1: https://giref.ulaval.ca/~cmpgiref/ompi_4.x/2021.03.01.20h00m01s_make_test.lo... https://giref.ulaval.ca/~cmpgiref/ompi_4.x/2021.03.01.20h00m01s_configure.lo... # FAILED snes_tutorials-ex17_3d_q3_trig_elas snes_tutorials-ex19_hypre ksp_ksp_tutorials-ex56_2 tao_leastsquares_tutorials-tomography_1 tao_constrained_tutorials-tomographyADMM_5 mat_tests-ex242_3 ksp_ksp_tutorials-ex55_hypre ksp_ksp_tutorials-ex5_superlu_dist_2 tao_constrained_tutorials-tomographyADMM_6 snes_tutorials-ex56_hypre snes_tutorials-ex56_attach_mat_nearnullspace-0_bddc_approx_hypre ksp_ksp_tutorials-ex5f_superlu_dist_3 ksp_ksp_tutorials-ex34_hyprestruct diff-ksp_ksp_tutorials-ex49_hypre_nullspace snes_tutorials-ex56_attach_mat_nearnullspace-1_bddc_approx_hypre ksp_ksp_tutorials-ex5f_superlu_dist ksp_ksp_tutorials-ex5f_superlu_dist_2 ksp_ksp_tutorials-ex5_superlu_dist snes_tutorials-ex19_tut_3 snes_tutorials-ex19_superlu_dist ksp_ksp_tutorials-ex50_tut_2 snes_tutorials-ex17_3d_q3_trig_vlap ksp_ksp_tutorials-ex5_superlu_dist_3 snes_tutorials-ex19_superlu_dist_2 tao_constrained_tutorials-tomographyADMM_4 ts_tutorials-ex26_2 # success 8125/9753 tests (83.3%) #*failed 26/9753* tests (0.3%) With OpenMP=0 https://giref.ulaval.ca/~cmpgiref/ompi_4.x/2021.02.28.20h00m04s_make_test.lo... https://giref.ulaval.ca/~cmpgiref/ompi_4.x/2021.02.28.20h00m04s_configure.lo... # FAILED mat_tests-ex242_3 # success 8174/9777 tests (83.6%) #*failed 1/9777* tests (0.0%) ============================================================================== ============================================================================== Is that known and normal? In all cases, I am using MKL and I suspect it may come from there... :/ I also saw a second problem, "make test" fails to compile petsc examples on older versions of MKL (but that's less important for me, I just upgraded to OneAPI to avoid this, but you may want to know): https://giref.ulaval.ca/~cmpgiref/dernier_ompi/2021.03.02.02h16m01s_make_tes... https://giref.ulaval.ca/~cmpgiref/dernier_ompi/2021.03.02.02h16m01s_configur... Thanks, Eric -- Eric Chamberland, ing., M. Ing Professionnel de recherche GIREF/Université Laval (418) 656-2131 poste 41 22 42
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Eric Chamberland