Re: [petsc-dev] Error in make test
I've just pulled and make test is broken for me. There's something messed up with PetscThreadCommunicators. Besides, I did not configure petsc-dev to use threads. A revision which works for me is 23244. I'm using openmpi.1.5.5. Here is the traceback of the error [0]PETSC ERROR: PetscCommDuplicate() line 200 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/sys/objects/tagm.c [0]PETSC ERROR: PetscHeaderCreate_Private() line 51 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/sys/objects/inherit.c [0]PETSC ERROR: SNESCreate() line 1293 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/snes/interface/snes.c [0]PETSC ERROR: main() line 102 in src/snes/examples/tutorials/ex19.c 2012/5/5 Stefano Zampini <[email protected]>
I reverted to 23244.
2012/5/5 Shri <[email protected]>
I've disabled the threadcomm code temporarily, so hopefully your code should run as before now. Please pull and retry.
Thanks, Shri
------------------------------
Same error on make test.
Moreover, I got some mpi errors running my fortran codes and PETSc doesn't show the traceback I can only see that the problem occurs in PetscInitialize Here is the cryptic output from MPI (openmpi.1.4.5)
[neo155:25438] *** An error occurred in MPI_Attr_get [neo155:25438] *** on communicator MPI COMMUNICATOR 3 DUP FROM 1 [neo155:25438] *** MPI_ERR_OTHER: known error not in list [neo155:25438] *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort)
2012/5/5 Shri <[email protected]>
I pushed some changes to fix these errors. Can you please pull and retry.
------------------------------
I had pulled some hours ago from http://petsc.cs.iit.edu/petsc/petsc-dev/rev/61898f35c333 and obtained the following error on make test
[0]PETSC ERROR: PetscCommDuplicate() line 200 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/sys/objects/tagm.c [0]PETSC ERROR: PetscHeaderCreate_Private() line 51 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/sys/objects/inherit.c [0]PETSC ERROR: SNESCreate() line 1293 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/snes/interface/snes.c [0]PETSC ERROR: main() line 102 in src/snes/examples/tutorials/ex19.c
I've just pulled and got the following error after typing make test
[0]PETSC ERROR: PetscCommDestroy() line 246 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/sys/objects/tagm.c [0]PETSC ERROR: PetscThreadCommFinalizePackage() line 36 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/sys/threadcomm/interface/dlregisthreadcomm.c [0]PETSC ERROR: PetscRegisterFinalizeAll() line 313 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/sys/objects/destroy.c [0]PETSC ERROR: PetscFinalize() line 1080 in /work/adz/zampini/MyWorkingCopyOfPetsc/petsc-dev/src/sys/objects/pinit.
I did not configure for a threaded version of PETSc.
-- Stefano
-- Stefano
-- Stefano
-- Stefano
participants (1)
-
Stefano Zampini