I was able to run a parallel test manually. Do you have any thoughts on Kokkos? '--with-kokkos-hip-arch=VEGA908', On Fri, Dec 10, 2021 at 11:08 AM Mark Adams <[email protected]> wrote:
It seems to be hanging on the 2 processor test. I'll try running jobs manually.
On Fri, Dec 10, 2021 at 9:34 AM Satish Balay <[email protected]> wrote:
Merged now. And the following now works [for me].
1025 git fetch -p 1026 git checkout origin/main 1027 ./config/examples/arch-olcf-spock.py && make 1028 MPIR_CVAR_GPU_EAGER_DEVICE_MEM=0 MPICH_GPU_SUPPORT_ENABLED=1 MPICH_SMP_SINGLE_COPY_MODE=CMA make check
Satish
On Fri, 10 Dec 2021, Satish Balay via petsc-dev wrote:
Works for me [per instructions in balay/update-spock, config/examples/arch-olcf-spock.py] with main - without these additional options
I'll go ahead and merge in balay/update-spock
Satish
-----
1009 git fetch -p 1015 module load emacs 1016 module load rocm/4.3.0 1018 git reset --hard 1019 git checkout origin/main 1020 git merge origin/balay/update-spock 1021 ./config/examples/arch-olcf-spock.py && make
[[email protected] petsc]$ MPIR_CVAR_GPU_EAGER_DEVICE_MEM=0 MPICH_GPU_SUPPORT_ENABLED=1 MPICH_SMP_SINGLE_COPY_MODE=CMA make check Running check examples to verify correct installation Using PETSC_DIR=/autofs/nccs-svm1_home1/balay/petsc and PETSC_ARCH=arch-olcf-spock C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes C/C++ example src/snes/tutorials/ex3k run successfully with kokkos-kernels *******************Error detected during compile or link!******************* See http://www.mcs.anl.gov/petsc/documentation/faq.html /ccs/home/balay/petsc/src/snes/tutorials ex5f ********************************************************* ftn -fPIC -fPIC -I/autofs/nccs-svm1_home1/balay/petsc/include -I/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/include -I/opt/rocm-4.3.0/include ex5f.F90 -Wl,-rpath,/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/lib -L/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/lib -Wl,-rpath,/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/lib -L/autofs/nccs-svm1_home1/balay/petsc/arch-olcf-spock/lib -Wl,-rpath,/opt/rocm-4.3.0/lib -L/opt/rocm-4.3.0/lib -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/gtl/lib -L/opt/cray/pe/mpich/8.1.10/gtl/lib -Wl,-rpath,/opt/cray/pe/gcc/8.1.0/snos/lib64 -L/opt/cray/pe/gcc/8.1.0/snos/lib64 -Wl,-rpath,/opt/cray/pe/libsci/ 21.08.1.2/CRAY/9.0/x86_64/lib -L/opt/cray/pe/libsci/ 21.08.1.2/CRAY/9.0/x86_64/lib -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/ofi/cray/10.0/lib -L/opt/cray/pe/mpich/8.1.10/ofi/cray/10.0/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.14/lib -L/opt/cray/pe/pmi/6 .0.14/li b -Wl,-rpath,/opt/cray/pe/cce/12.0.3/cce/x86_64/lib -L/opt/cray/pe/cce/12.0.3/cce/x86_64/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.44__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_2.44__g3cf3325.shasta/lib64 -Wl,-rpath,/opt/cray/pe/cce/12.0.3/cce-clang/x86_64/lib/clang/12.0.0/lib/linux -L/opt/cray/pe/cce/12.0.3/cce-clang/x86_64/lib/clang/12.0.0/lib/linux -Wl,-rpath,/opt/cray/pe/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 -L/opt/cray/pe/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 -Wl,-rpath,/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-unknown-linux-gnu/lib -L/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-unknown-linux-gnu/lib -lpetsc -lmagma -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lrocrand -lamdhip64 -lstdc++ -ldl -lmpi_gtl_hsa -lmpifort_cray -lmpi_cray -ldsmml -lpmi -lpmi2 -lxpmem -lpgas-shmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread -lgcc_eh -lm -lclang_rt.craypg o-x86_64 -lclang_rt.builtins-x86_64 -lquadmath -lstdc++ -ldl -lmpi_gtl_hsa -o ex5f/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: warning: alignment 128 of symbol `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in /opt/cray/pe/cce/12.0.3/cce/x86_64/lib/libmodules.so is smaller than 256 in /tmp/pe_202599/ex5f_1.o /opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: warning: alignment 64 of symbol `$data_init$iso_c_binding_' in /opt/cray/pe/cce/12.0.3/cce/x86_64/lib/libmodules.so is smaller than 256 in /tmp/pe_202599/ex5f_1.o Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI process Completed test examples [[email protected] petsc]$
On Fri, 10 Dec 2021, Mark Adams wrote:
FWIW, here is my current status.
08:08 main= spock:/gpfs/alpine/csc314/scratch/adams/petsc$ make PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc PETSC_ARCH=arch-olcf-spock check Running check examples to verify correct installation Using PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc and PETSC_ARCH=arch-olcf-spock Possible error running C/C++ src/snes/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html lid velocity = 0.0016, prandtl # = 1., grashof # = 1. 0 KSP Residual norm 0.0406612 1 KSP Residual norm 0.036923 2 KSP Residual norm 0.0191849 3 KSP Residual norm 0.00201589 4 KSP Residual norm 0.000376045 5 KSP Residual norm 4.2974e-05 6 KSP Residual norm 5.96585e-06 7 KSP Residual norm 4.5398e-07 8 KSP Residual norm 6.30474e-08 9 KSP Residual norm 5.55518e-09 10 KSP Residual norm 6.180e-10 11 KSP Residual norm 6.211e-11 Linear solve converged due to CONVERGED_RTOL iterations 11 0 KSP Residual norm 3.32845e-06 1 KSP Residual norm 9.0003e-07 2 KSP Residual norm 1.32594e-07 3 KSP Residual norm 1.49857e-08 4 KSP Residual norm 1.31887e-09 5 KSP Residual norm 2.105e-10 6 KSP Residual norm 2.827e-11 7 KSP Residual norm < 1.e-11 8 KSP Residual norm < 1.e-11 9 KSP Residual norm < 1.e-11 10 KSP Residual norm < 1.e-11 Linear solve converged due to CONVERGED_RTOL iterations 10 Number of SNES iterations = 2 Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI processes See http://www.mcs.anl.gov/petsc/documentation/faq.html lid velocity = 0.0016, prandtl # = 1., grashof # = 1. 0 KSP Residual norm 0.0406612 1 KSP Residual norm 0.0281101 2 KSP Residual norm 0.00773873 3 KSP Residual norm 0.00165731 4 KSP Residual norm 0.000395614 5 KSP Residual norm 8.67655e-05 6 KSP Residual norm 1.69495e-05 7 KSP Residual norm 3.70051e-06 8 KSP Residual norm 5.97067e-07 9 KSP Residual norm 1.02242e-07 10 KSP Residual norm 1.75727e-08 11 KSP Residual norm 3.84826e-09 12 KSP Residual norm 6.414e-10 13 KSP Residual norm 1.380e-10 Linear solve converged due to CONVERGED_RTOL iterations 13 0 KSP Residual norm 3.32846e-06 1 KSP Residual norm 8.99139e-07 2 KSP Residual norm 1.72893e-07 3 KSP Residual norm 3.733e-08 4 KSP Residual norm 6.67427e-09 5 KSP Residual norm 1.22785e-09 6 KSP Residual norm 2.551e-10 7 KSP Residual norm 5.458e-11 8 KSP Residual norm 1.050e-11 9 KSP Residual norm < 1.e-11 10 KSP Residual norm < 1.e-11 11 KSP Residual norm < 1.e-11 12 KSP Residual norm < 1.e-11 Linear solve converged due to CONVERGED_RTOL iterations 12 Number of SNES iterations = 2 3,5c3,14 < 1 SNES Function norm 4.12227e-06 < 2 SNES Function norm 6.098e-11 < Number of SNES iterations = 2 ---
0 KSP Residual norm 0.0406612 1 KSP Residual norm 0.21263 2 KSP Residual norm 1.09192 3 KSP Residual norm 6.9087 4 KSP Residual norm 23.4292 5 KSP Residual norm 57.7558 6 KSP Residual norm 118.076 7 KSP Residual norm 213.527 8 KSP Residual norm 354.101 9 KSP Residual norm 550.58 Linear solve did not converge due to DIVERGED_DTOL iterations 9 Number of SNES iterations = 0
/gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials Possible problem with ex19 running with hypre, diffs above ========================================= gmake[3]: [makefile:115: runex3k_kokkos] Error 134 (ignored) 21,25c21,26 < 1 SNES Function norm 2.952582418265e-01 < 2 SNES Function norm 4.502293658739e-04 < 3 SNES Function norm 1.389665806646e-09 < Number of SNES iterations = 3 < Norm of error 1.49752e-10 Iterations 3 ---
Memory access fault by GPU node-4 (Agent handle: 0xb08c90) on address 0xe17000. Reason: Page not present or supervisor privilege. Memory access fault by GPU node-5 (Agent handle: 0xb0d3c0) on address 0xe11000. Reason: Page not present or supervisor privilege. srun: error: spock25: task 0: Aborted srun: launch/slurm: _step_signal: Terminating StepId=304034.3 slurmstepd: error: *** STEP 304034.3 ON spock25 CANCELLED AT 2021-12-10T08:08:40 *** srun: error: spock25: task 1: Aborted (core dumped) /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials Possible problem with ex3k running with kokkos-kernels, diffs above ========================================= *******************Error detected during compile or link!******************* See http://www.mcs.anl.gov/petsc/documentation/faq.html /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex5f
ftn -fPIC -fPIC -I/gpfs/alpine/csc314/scratch/adams/petsc/include -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-olcf-spock/include
-I/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray/include
-I/opt/rocm-4.3.0/include ex5f.F90
-Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-olcf-spock/lib
-L/gpfs/alpine/csc314/scratch/adams/petsc/arch-olcf-spock/lib
-Wl,-rpath,/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray/lib
-L/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray/lib
-Wl,-rpath,/opt/rocm-4.3.0/lib -L/opt/rocm-4.3.0/lib -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/gtl/lib -L/opt/cray/pe/mpich/8.1.10/gtl/lib -Wl,-rpath,/opt/cray/pe/gcc/8.1.0/snos/lib64 -L/opt/cray/pe/gcc/8.1.0/snos/lib64 -Wl,-rpath,/opt/cray/pe/libsci/ 21.08.1.2/CRAY/9.0/x86_64/lib -L/opt/cray/pe/libsci/ 21.08.1.2/CRAY/9.0/x86_64/lib -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/ofi/cray/10.0/lib -L/opt/cray/pe/mpich/8.1.10/ofi/cray/10.0/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.14/lib -L/opt/cray/pe/pmi/6.0.14/lib -Wl,-rpath,/opt/cray/pe/cce/12.0.3/cce/x86_64/lib -L/opt/cray/pe/cce/12.0.3/cce/x86_64/lib -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.44__g3cf3325.shasta/lib64 -L/opt/cray/xpmem/2.2.40-2.1_2.44__g3cf3325.shasta/lib64
-Wl,-rpath,/opt/cray/pe/cce/12.0.3/cce-clang/x86_64/lib/clang/12.0.0/lib/linux
-L/opt/cray/pe/cce/12.0.3/cce-clang/x86_64/lib/clang/12.0.0/lib/linux -Wl,-rpath,/opt/cray/pe/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 -L/opt/cray/pe/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
-Wl,-rpath,/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-unknown-linux-gnu/lib
-L/opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-unknown-linux-gnu/lib -lpetsc -lHYPRE -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lrocrand -lamdhip64 -lstdc++ -ldl -lmpi_gtl_hsa -lmpifort_cray -lmpi_cray -ldsmml -lpmi -lpmi2 -lxpmem -lpgas-shmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 -lquadmath -lstdc++ -ldl -lmpi_gtl_hsa -o ex5f /opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: warning: alignment 128 of symbol `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in /opt/cray/pe/cce/12.0.3/cce/x86_64/lib/libmodules.so is smaller than 256 in /tmp/pe_46424/ex5f_1.o /opt/cray/pe/cce/12.0.3/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: warning: alignment 64 of symbol `$data_init$iso_c_binding_' in /opt/cray/pe/cce/12.0.3/cce/x86_64/lib/libmodules.so is smaller than 256 in /tmp/pe_46424/ex5f_1.o Possible error running Fortran example src/snes/tutorials/ex5f with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html 0 KSP Residual norm < 1.e-11 Linear solve converged due to CONVERGED_ATOL iterations 0
On Fri, Dec 10, 2021 at 8:07 AM Mark Adams <[email protected]> wrote:
I am trying to get Spock working (again) and am having problems.
* make check seems to fail but it is hard to see what is going on. Maybe we should start here, but let me continue.
* GAMG seems to work on the CPU
* I have this for configuring with Kokkos. I am guessing these versions are out of data. What is current practice: '--with-kokkos-hip-arch=VEGA908', '--download-kokkos-commit=3.4.01', '--download-kokkos-kernels-commit=3.4.01',
* Should I hold off (and tell my eager user to do same)?
Thanks, Mark
participants (1)
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Mark Adams