Re: [petsc-dev] uni

23 Nov 2011

      Yep, need to keep the extra include with uni, but not the lib anymore.

Now I get this error, any ideas?  I need a uni regression test apparently.

[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument:
see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind!
[0]PETSC ERROR: Inner MPI_Comm does not have expected reference to outer comm!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision: 3dda30872eeec1a2ea5c130f267935c5e0b2534a  HG Date: Mon Nov 21 11:19:39 2011 -0800
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./viscousTensorSolve2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.ex on a arch-maco named madams-macbk-3.local by markadams Wed Nov 23 11:25:30 2011
[0]PETSC ERROR: Libraries linked from /Users/markadams/Codes/petsc-dev/arch-macosx-gnu-seq/lib
[0]PETSC ERROR: Configure run at Tue Nov 22 12:41:46 2011
[0]PETSC ERROR: Configure options CXX=/sw/lib/gcc4.4/bin/g++-4 CC=/sw/lib/gcc4.4/bin/gcc-4 FC=/sw/lib/gcc4.4/bin/gfortran --with-x=0 --with-clanguage=c++ --with-debugging=0 --with-mpi=0 PETSC_ARCH=arch-macosx-gnu-seq
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc_DelComm() line 448 in /Users/markadams/Codes/petsc-dev/src/sys/objects/pinit.c
[0]PETSC ERROR: --------------------- Error Message ------------------------------------
[0]PETSC ERROR: Corrupt argument:
see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind!
[0]PETSC ERROR: MPI_Comm does not have tag/name counter nor does it have inner MPI_Comm!
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development HG revision: 3dda30872eeec1a2ea5c130f267935c5e0b2534a  HG Date: Mon Nov 21 11:19:39 2011 -0800
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: ./viscousTensorSolve2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.ex on a arch-maco named madams-macbk-3.local by markadams Wed Nov 23 11:25:30 2011
[0]PETSC ERROR: Libraries linked from /Users/markadams/Codes/petsc-dev/arch-macosx-gnu-seq/lib
[0]PETSC ERROR: Configure run at Tue Nov 22 12:41:46 2011
[0]PETSC ERROR: Configure options CXX=/sw/lib/gcc4.4/bin/g++-4 CC=/sw/lib/gcc4.4/bin/gcc-4 FC=/sw/lib/gcc4.4/bin/gfortran --with-x=0 --with-clanguage=c++ --with-debugging=0 --with-mpi=0 PETSC_ARCH=arch-macosx-gnu-seq
[0]PETSC ERROR: ------------------------------------------------------------------------
[0]PETSC ERROR: PetscCommDestroy() line 229 in /Users/markadams/Codes/petsc-dev/src/sys/objects/tagm.c
[0]PETSC ERROR: PetscHeaderDestroy_Private() line 110 in /Users/markadams/Codes/petsc-dev/src/sys/objects/inherit.c
[0]PETSC ERROR: MatDestroy() line 1045 in /Users/markadams/Codes/petsc-dev/src/mat/interface/matrix.c
[0]PETSC ERROR: partitionLevel() line 347 in /Users/markadams/Codes/petsc-dev/src/ksp/pc/impls/gamg/gamg.c
[0]PETSC ERROR: PCSetUp_GAMG() line 599 in /Users/markadams/Codes/petsc-dev/src/ksp/pc/impls/gamg/gamg.c
[0]PETSC ERROR: PCSetUp() line 819 in /Users/markadams/Codes/petsc-dev/src/ksp/pc/interface/precon.c
[0]PETSC ERROR: KSPSetUp() line 261 in /Users/markadams/Codes/petsc-dev/src/ksp/ksp/interface/itfunc.c
[0]PETSC ERROR: solveprivate() line 191 in "unknowndirectory/"PetscLinearSolverI.H

On Nov 22, 2011, at 3:19 PM, Barry Smith wrote:
...
You have som other MPI include file hanging around that is getting intercepted before the MPI Uni one.
Barry
On Nov 22, 2011, at 12:00 PM, Mark F. Adams wrote:
...
Scorched earth did not work:
"VecCreate(ompi_communicator_t*, _p_Vec**)", referenced from:
    PetscLinearSolver<LevelData<FArrayBox> >::solveprivate(LevelData<FArrayBox>&, LevelData<FArrayBox> const&) in libamrelliptic2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.a(PetscLinearSolver.o)
"_ompi_mpi_comm_self", referenced from:
    _ompi_mpi_comm_self$non_lazy_ptr in libamrelliptic2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.a(PetscLinearSolver.o)
<configure.log.gz>
On Nov 22, 2011, at 11:47 AM, Satish Balay wrote:
...
Something is strange.
I'll suggeset
rm -rf externalpackages arch-macosx-gnu-seq
and then doing a fresh build.
And then verifying the build with 'make test'
If 'make test' works - and the application build is not working- I'd
like to see the complete compile log thats producing this error.
wrt libmpiuni.a - all the relavent stuff is added to libpetsc.a and a separate
libmpiuni.a is not created.
Satish
On Tue, 22 Nov 2011, Mark F. Adams wrote:
...
I'm trying to build a non MPI code and get this error:
Undefined symbols:
"_ompi_mpi_comm_self", referenced from:
   _ompi_mpi_comm_self$non_lazy_ptr in libamrelliptic2d.Darwin.g++-4.gfortran.DEBUG.OPT.PETSC.a(PetscLinearSolver.o)
  (maybe you meant: _ompi_mpi_comm_self$non_lazy_ptr)
In the past I have linked libmpiuni.a but that did not seem to get created.  Did libmpiuni.a go away or did my make fail ...
Mark

Mark F. Adams

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