Executing: uname -s stdout: Linux ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= ================================================================================ ================================================================================ Starting configure run at Wed, 11 Jan 2023 18:44:49 -0500 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-mpi-dir=/opt/intel/oneapi/mpi/2021.8.0/ --with-blaslapack-dir=/opt/intel/oneapi/mkl/2023.0.0/ --force Working directory: /home/zhangsijie1995/Documents/Package/petsc-3.18.3 Machine platform: uname_result(system='Linux', node='SkyLight-III', release='5.15.0-57-generic', version='#63-Ubuntu SMP Thu Nov 24 13:43:17 UTC 2022', machine='x86_64') Python version: 3.10.6 (main, Nov 14 2022, 16:10:14) [GCC 11.3.0] ================================================================================ Environmental variables COLORTERM=truecolor XAUTHORITY=/run/user/1000/gdm/Xauthority LANG=en_US.UTF-8 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XDG_CURRENT_DESKTOP=ubuntu:GNOME TERM=xterm-256color DISPLAY=:1 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin MAIL=/var/mail/root LOGNAME=root USER=root HOME=/root SHELL=/bin/bash SUDO_COMMAND=./configure --with-mpi-dir=/opt/intel/oneapi/mpi/2021.8.0/ --with-blaslapack-dir=/opt/intel/oneapi/mkl/2023.0.0/ --force SUDO_USER=zhangsijie1995 SUDO_UID=1000 SUDO_GID=1000 Files in path provided by default path /usr/local/sbin: sep5-load.sh /usr/local/bin: /usr/sbin: update-fonts-dir chcpu cracklib-packer chmem gdisk iptables on_ac_power iucode_tool update-pciids openvpn ip6tables-nft chat nologin cgdisk switch_root mount.ntfs-3g u-d-c-print-pci-ids ldattach ntfslabel rmt apparmor_parser lpadmin tc cron shadowconfig ebtables-restore update-dictcommon-aspell iptables-nft-restore devlink rmmod grub-bios-setup runuser invoke-rc.d delgroup dcb rmt-tar ip6tables-translate update-grub pam_timestamp_check ip iptables-legacy userdel mount.ntfs dosfslabel plymouthd NetworkManager hdparm groupmems kbdrate update-grub-gfxpayload ippeveprinter grub-set-default fstab-decode umount.udisks2 iptables-restore-translate sudo_logsrvd remove-default-ispell installkernel mount.fuse grpconv mkswap ebtables-nft-save select-default-ispell useradd saned ntfsclone cupsd create-cracklib-dict visudo update-secureboot-policy pam_extrausers_update chpasswd e2image kerneloops brltty-setup init grpck e2undo cupsctl iwgetid ebtables-save hwloc-dump-hwdata sfdisk ip6tables-save agetty ip6tables-nft-save arptables mkfs.ext3 wpa_supplicant update-icon-caches pccardctl ip6tables-restore-translate ip6tables-legacy update-shells e2label fsfreeze update-info-dir dpkg-preconfigure pppd mkdosfs runlevel dhclient dnsmasq ModemManager mkfs dhclient-script getpcaps alsabat-test getcap blkdiscard iwspy ebtables-nft nft chroot cupsaccept rtmon ip6tables-nft-restore remove-shell update-ca-certificates update-locale fsck.vfat grub-reboot iptables-legacy-save make-ssl-cert lpinfo fstrim depmod cpgr iwpriv update-fonts-scale addgroup dosfsck usbmuxd mke2fs anacron fatlabel vigr iptables-save iptables-translate prime-offload update-dictcommon-hunspell bluetoothd e2mmpstatus deluser parted e2fsck wpa_cli mkhomedir_helper pam_extrausers_chkpwd unix_chkpwd add-shell blkid mkfs.minix pppstats upgrade-from-grub-legacy xtables-monitor ctrlaltdel iptables-restore telinit iwconfig iptables-nft-save pptp netplan iucode-tool modinfo ownership pwconv vpddecode adduser debugfs killall5 pppoe-discovery spice-vdagentd update-mime shutdown e2scrub_all e2scrub filefrag update-xmlcatalog halt mkfs.msdos setvesablank iwlist arptables-nft-restore sshd grpunconv isosize prime-switch accessdb groupmod acpid usb_modeswitch_dispatcher capsh fsck.ext4 fdisk ispell-autobuildhash dumpe2fs alsactl grub-install irqbalance blockdev iptables-legacy-restore update-cracklib grub-mkconfig xtables-legacy-multi mkfs.fat e2freefrag findfs fsck vdpa sudo_sendlog usermod fsck.minix resize2fs newusers unix_update arpd swapon arptables-save badblocks fsck.ext2 vcstime cfdisk mount.fuse3 faillock arptables-nft update-default-wordlist dmidecode mkfs.vfat update-passwd fsck.fat ntfsundelete fsck.ext3 arptables-nft-save getweb pwck aa-remove-unknown ip6tables-apply tzconfig genl mkfs.ntfs rtacct pptpsetup grub-probe mkntfs grub-mkdevicemap dmsetup partprobe applygnupgdefaults cupsreject insmod pam-auth-update rsyslogd start-stop-daemon poweroff ldconfig apparmor_status logsave irqbalance-ui pivot_root setcap ldconfig.real getty mkfs.cramfs uuidd rfkill groupdel pppdump fsck.cramfs validlocale aspell-autobuildhash swaplabel update-rc.d cupsenable avahi-autoipd thermald update-initramfs gnome-menus-blacklist setvtrgb iwevent lpc cupsdisable fixparts update-gsfontmap iconvconfig ntfscp sgdisk update-grub2 cups-browsed select-default-wordlist cracklib-format get-quirk-options nfnl_osf cupsfilter rtkitctl xtables-nft-multi update-default-ispell aptd biosdecode lsmod ip6tables-legacy-restore modprobe iptables-apply wipefs tune2fs sulogin zic ip6tables paperconfig fsck.msdos usb_modeswitch addgnupghome tarcat update-catalog update-inetd cppw bridge ip6tables-legacy-save mkfs.ext4 hwclock wpa_action pam_getenv arptables-restore remove-default-wordlist cracklib-check install-sgmlcatalog locale-gen e4crypt ub-device-create aa-status ebtables e4defrag ipp-usb mkfs.bfs swapoff mount.lowntfs-3g vipw service blkzone groupadd gparted alsa-info chgpasswd reboot gdm3 update-fonts-alias ufw rtcwake readprofile mkinitramfs logrotate lspcmcia update-default-aspell ip6tables-restore pwunconv zramctl dmstats aa-teardown cracklib-unpacker alsa brltty blkdeactivate tipc ebtables-nft-restore mklost+found ntfsresize lpmove losetup mkfs.ext2 sysctl iptables-nft dpkg-reconfigure avahi-daemon grub-macbless /usr/bin: vmwarectrl pkcheck see evince-previewer gnome-session-properties showkey infotocap Xorg foo2oak hp-testpage chacl dmesg xbrlapi zstdgrep infocmp on_ac_power ssh-agent 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mkzftree x86_64-linux-gnu-ar elfedit efibootmgr x86_64-linux-gnu-nm dpkg-mergechangelogs xzless ranlib base64 isdv4-serial-inputattach gzexe reset xvinfo cksum ps2epsi pw-top gnome-session-custom-session head pipewire nvidia-persistenced tzselect perlivp make-first-existing-target avahi-resolve-host-name spa-acp-tool xclock sensible-editor fprintd-list aseqdump touch lamtrace dpkg-deb gcov-tool-12 apport-bug kmodsign ps2pdfwr x86_64-linux-gnu-gold mdig avahi-resolve bitmap x86_64-linux-gnu-gcc-nm aa-features-abi x86_64-linux-gnu-gcc-ar-12 nvidia-smi atobm mesg ypdomainname wpa_passphrase hciattach apropos libwacom-list-local-devices du gcov-dump mousetweaks whoopsie foo2zjs tar pdftohtml ld.bfd ua pidof pr im-launch gapplication cut ps2ps ss chardetect getent logname lzfgrep gnome-language-selector gcc-nm-11 xsm less dpkg-gensymbols isoinfo ghostscript run-parts pdf2ps systemd xsetmode hp-makeuri uptime snapctl zipcloak deallocvt gfortran-11 xlsfonts mount comm select-default-iwrap setsid pw-mon printer-profile appres gnome-session x86_64-linux-gnu-ranlib rmdir ping4 rendercheck x86_64-linux-gnu-gcov-12 install-info hp-firmware btmgmt nstat encguess piconv py3versions systemd-inhibit dbus-uuidgen pnm2ppa systemd-escape ptx dbxtool rctest znew lsmem systemd-delta spice-vdagent fprintd-verify mpifort.mpich h2xs fwupdtool apt mountpoint apt-config ipcmk loadunimap hp-setup ipptool hwloc-ls foo2lava lzcmp numfmt mokutil grdctl hwe-support-status lstopo-no-graphics gsdj500 cd-create-profile gcc-nm gs troff i386 w psfxtable foo2qpdl json_pp busctl gcalccmd taskset enc2xs btmon hwloc-bind nc.openbsd mpichversion ln logger grub-mkrescue vi lowntfs-3g kbd_mode snap ps2ps2 startx gcov-11 gpgconf cpan5.34-x86_64-linux-gnu systemd-notify rm paperconf hwloc-diff rygel c++filt helpztags x86_64-linux-gnu-gcov-dump-11 sdptool hostnamectl ex mkfifo who pdb3 libnetcfg lamd isodump xfontsel foo2hp2600-wrapper chmod bzless cat lavadecode pstree dpkg-statoverride toe pw-reserve kill dirmngr-client sha1sum fgconsole xwininfo mpiCC monitor-sensor xkbprint btattach ppdmerge lamhalt xeyes gcov-dump-12 vstp x86_64-linux-gnu-gcov-11 Xephyr dbus-send bzdiff printf gcc-ar-11 setxkbmap fusermount flock screendump dpkg-realpath pdfseparate nm link perlthanks nm-online split dpkg ucs2any grub-script-check pax11publish sane-find-scanner xcalc prime-select setfacl cd-fix-profile hwloc-ps ctstat upower corelist dbus-update-activation-environment bluetooth-sendto lscpu stat ntfstruncate hp-doctor apgbfm geqn factor zipnote plog intel-virtual-output ftp df podchecker size powerprofilesctl hp-logcapture gst-inspect-1.0 gzip apt-cdrom sg GET ssh-import-id-lp dconf colormgr systemd-run dirname gtbl ptargrep grub-mkrelpath xkeystone uncompress ptardiff gdialog ssh-add aspell-import brltty xkbvleds cc xinit pw-cli gedit sort mcookie grub-menulst2cfg diff3 cmp mmcli apt-mark lexgrog cpio splain tee im-config hbpldecode more lpoptions perl5.34.0 xmodmap dircolors c_rehash fonttosfnt cp setmetamode gtk4-launch getopt gsettings hboot x86_64-linux-gnu-gcov printenv ed xqxdecode gcc-ranlib-11 mpicc.mpich lzmainfo /snap/bin: snap-store snap-store.ubuntu-software-local-file code gimp firefox.geckodriver geckodriver vlc snap-store.ubuntu-software firefox code.url-handler ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/framework.py:1045) Set alternative directory external packages are built in serialEvaluation: initial cxxDialectRanges ('c++11', 'c++17') serialEvaluation: new cxxDialectRanges ('c++11', 'c++17') child config.utilities.macosFirewall took 0.000001 seconds ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/debuggers.py:20) Find a default debugger and determine its arguments Checking for program /usr/local/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Defined make macro "DSYMUTIL" to "true" child config.utilities.debuggers took 0.000328 seconds ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/petscdir.py:22) Checks PETSC_DIR and sets if not set PETSC_VERSION_RELEASE of 1 indicates the code is from a release branch or a branch created from a release branch. Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 18 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_DATE "Dec 28, 2022" #define PETSC_VERSION_GIT "v3.18.3" #define PETSC_VERSION_DATE_GIT "2022-12-28 12:58:50 -0600" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir took 0.000463 seconds ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath took 0.000057 seconds ============================================================================================= TESTING: configureGit from config.sourceControl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/sbin/git...not found Checking for program /usr/bin/git...not found Checking for program /sbin/git...not found Checking for program /bin/git...not found Checking for program /snap/bin/git...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/git...not found ============================================================================================= TESTING: configureMercurial from config.sourceControl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /sbin/hg...not found Checking for program /bin/hg...not found Checking for program /snap/bin/hg...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/hg...not found child config.sourceControl took 0.000230 seconds ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/petscclone.py:20) Determine if PETSc was obtained via git or a tarball This is a tarball installation child PETSc.options.petscclone took 0.000087 seconds ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/arch.py:29) Forms the arch as GNU's configure would form it ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/arch.py:42) Checks if PETSC_ARCH is set and sets it if not set Forcing a new configuration requested by use Setting hashfile: arch-linux-c-debug/lib/petsc/conf/configure-hash Deleting configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash Deleted configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash child PETSc.options.arch took 0.002956 seconds ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/installDir.py:31) Set installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/installDir.py:76) Save the configure options in a script in PETSC_ARCH/lib/petsc/conf so the same configure may be easily re-run ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/installDir.py:68) Remove all the files from configuration directory for this PETSC_ARCH, from --with-clean option ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/installDir.py:52) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/installDir.py:90) If --with-clean was requested but restoring the reconfigure file was requested then restore it child PETSc.options.installDir took 0.000276 seconds ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/externalpackagesdir.py:15) Set location where external packages will be downloaded to ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/externalpackagesdir.py:23) Remove all downloaded external packages, from --with-clean child PETSc.options.externalpackagesdir took 0.000060 seconds ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages took 0.000190 seconds ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2653) Remove compilers from the shell environment so they do not interfere with testing ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2670) Set configure compilers from the environment, from -with-environment-variables ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2623) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2644) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:723) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLFLAGS to Initialized SYCLFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1341) Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpincc...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/mpincc...not found Unable to find programs: ['mpincc'] in listing of the specific search path: ['/opt/intel/oneapi/mpi/2021.8.0/bin'] /opt/intel/oneapi/mpi/2021.8.0/bin: tune tune_fast impi_info IMB-RMA IMB-MPI1-GPU mpicxx mpiifort hydra_nameserver mpif90 mpigcc IMB-MT cpuinfo mpitune_fast mpiexec.hydra mpicc mpitune mpiexec mpirun hydra_bstrap_proxy mpif77 IMB-NBC IMB-P2P hydra_pmi_proxy mpigxx IMB-MPI1 mpiicpc mpifc mpiicc Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicc...found Defined make macro "CC" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpiicc" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 127 stderr: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicc: 1: eval: icc: not found Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Error testing C compiler: Cannot compile C with /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicc. MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicc failed to compile Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicc -show stdout: icc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -ldl -lrt -lpthread MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicc is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CC" Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc...found Defined make macro "CC" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status: ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Testing executable /tmp/petsc-j92ofwaf/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --version stdout: gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -v | head -n 20 stdout: mpigcc for the Intel(R) MPI Library 2021.8 for Linux* Copyright Intel Corporation. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1384) Locate a functional C preprocessor Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc...found Defined make macro "CPP" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1690) Locate a functional Cxx compiler Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpinc++...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/opt/intel/oneapi/mpi/2021.8.0/bin'] /opt/intel/oneapi/mpi/2021.8.0/bin: tune tune_fast impi_info IMB-RMA IMB-MPI1-GPU mpicxx mpiifort hydra_nameserver mpif90 mpigcc IMB-MT cpuinfo mpitune_fast mpiexec.hydra mpicc mpitune mpiexec mpirun hydra_bstrap_proxy mpif77 IMB-NBC IMB-P2P hydra_pmi_proxy mpigxx IMB-MPI1 mpiicpc mpifc mpiicc Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpinc++...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/opt/intel/oneapi/mpi/2021.8.0/bin'] /opt/intel/oneapi/mpi/2021.8.0/bin: tune tune_fast impi_info IMB-RMA IMB-MPI1-GPU mpicxx mpiifort hydra_nameserver mpif90 mpigcc IMB-MT cpuinfo mpitune_fast mpiexec.hydra mpicc mpitune mpiexec mpirun hydra_bstrap_proxy mpif77 IMB-NBC IMB-P2P hydra_pmi_proxy mpigxx IMB-MPI1 mpiicpc mpifc mpiicc Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpinc++...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/mpinc++...not found Unable to find programs: ['mpinc++'] in listing of the specific search path: ['/opt/intel/oneapi/mpi/2021.8.0/bin'] /opt/intel/oneapi/mpi/2021.8.0/bin: tune tune_fast impi_info IMB-RMA IMB-MPI1-GPU mpicxx mpiifort hydra_nameserver mpif90 mpigcc IMB-MT cpuinfo mpitune_fast mpiexec.hydra mpicc mpitune mpiexec mpirun hydra_bstrap_proxy mpif77 IMB-NBC IMB-P2P hydra_pmi_proxy mpigxx IMB-MPI1 mpiicpc mpifc mpiicc Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc...found Defined make macro "CXX" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 127 stderr: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc: 1: eval: icpc: not found Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Error testing C++ compiler: Cannot compile Cxx with /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc. MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc failed to compile Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc -show stdout: icpc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -ldl -lrt -lpthread MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CXX" Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc...found Defined make macro "CXX" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cpp Possible ERROR while running compiler: exit code 127 stderr: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc: 1: eval: icpc: not found Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Error testing C++ compiler: Cannot compile Cxx with /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc. MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc failed to compile Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc -show stdout: icpc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -ldl -lrt -lpthread MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CXX" Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc...found Defined make macro "CXX" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.C Possible ERROR while running compiler: exit code 127 stderr: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc: 1: eval: icpc: not found Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Error testing C++ compiler: Cannot compile Cxx with /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc. MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc failed to compile Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc -show stdout: icpc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -ldl -lrt -lpthread MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiicpc is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "CXX" Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx...found Defined make macro "CXX" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status: ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Testing executable /tmp/petsc-j92ofwaf/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --version stdout: g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkDeviceHostCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:747) Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...). Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkCxxDialect from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:769) Determine the CXX dialect supported by the compiler (language) [and corresponding compiler option - if any]. isGNUish indicates if the compiler is gnu compliant (i.e. clang). -with--dialect can take options: auto: use highest supported dialect configure can determine [[c|gnu][xx|++]]20: not yet supported [[c|gnu][xx|++]]17: gnu++17 or c++17 [[c|gnu][xx|++]]14: gnu++14 or c++14 [[c|gnu][xx|++]]11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default On return this function sets the following values: - if needed, appends the relevant CXX dialect flag to compiler flags - self.cxxDialectRange = (minSupportedDialect,maxSupportedDialect) (e.g. ('c++11','c++14')) - self.addDefine('HAVE_{LANG}_DIALECT_CXX{DIALECT_NUM}',1) for every supported dialect - self.lang+'dialect' = 'c++'+maxDialectNumber (e.g. 'c++14') but ONLY if the user specifically requests a dialect version, otherwise this is not set Raises a config.base.ConfigureSetupError if: - The user has set both the --with-dialect=[...] configure options and -std=[...] in their compiler flags - The combination of specifically requested packages cannot all be compiled with the same flag - An unknown C++ dialect is provided The config.base.ConfigureSetupErrors are NOT meant to be caught, as they are fatal errors on part of the user Raises a RuntimeError (which may be caught) if: - The compiler does not support at minimum -std=c++11 checkCxxDialect: checking C++ dialect version for language "CXX" using compiler "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx" checkCxxDialect: PETSc believes compiler (/opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx) IS gnu-ish checkCxxDialect: PETSc believes that we have NOT processed /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx before checkCxxDialect: configure option after sanitization: --with-cxx-dialect=AUTO checkCxxDialect: dialect AUTO has been NOT explicitly selected for CXX checkCxxDialect: Have potential flag pool: - -std=gnu++17 - -std=c++17 - -std=gnu++14 - -std=c++14 - -std=gnu++11 - -std=c++11 checkCxxDialect: checking CXX 17 for cxx with -std=gnu++17 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -std=gnu++17 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" // c++11 includes #include #include #include #include template void ignore(const T&) { } // silence unused variable warnings class valClass { public: int i; valClass() { i = 3; } valClass(int x) : i(x) { } }; class MoveSemantics { std::unique_ptr _member; public: MoveSemantics(int val = 4) : _member(new valClass(val)) { } MoveSemantics& operator=(MoveSemantics &&other) noexcept = default; }; template constexpr T Cubed( T x ) { return x*x*x; } auto trailing(int x) -> int { return x+2; } enum class Shapes : int {SQUARE,CIRCLE}; template struct Tuple { }; using PetscErrorCode = int; // c++14 includes #include template constexpr T pi = T(3.1415926535897932385L); // variable template // c++17 includes #include #include #include #include [[nodiscard]] int nodiscardFunc() { return 0; } struct S2 { // static inline member variables since c++17 static inline int var = 8675309; void f(int i); }; void S2::f(int i) { // until c++17: Error: invalid syntax // since c++17: OK: captures the enclosing S2 by copy auto lmbd = [=, *this] { std::cout << i << " " << this->var << std::endl; }; lmbd(); } int main() { // c++11 body valClass cls = valClass(); // value initialization int i = cls.i; // i is not declared const const int& rci = i; // but rci is const_cast(rci) = 4; constexpr int big_value = 1234; decltype(big_value) ierr = big_value; auto ret = trailing(ierr); MoveSemantics bob; MoveSemantics alice; alice = std::move(bob);ignore(alice); Tuple<> t0;ignore(t0); Tuple t1;ignore(t1); Tuple t2;ignore(t2); std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x << ret << std::endl; // c++14 body auto ptr = std::make_unique(); *ptr = 1; std::cout << pi << std::endl; constexpr const std::complex const_i(0.0,1.0); auto lambda = [](auto x, auto y) { return x + y; }; std::cout << lambda(3,4) << std::real(const_i) << std::endl; // c++17 body std::variant v,w; v = 42; // v contains int int ivar = std::get(v); w = std::get<0>(v); // same effect as the previous line w = v; // same effect as the previous line S2 foo; foo.f(ivar); if constexpr (std::is_arithmetic_v) std::cout << "c++17" << std::endl; typedef std::integral_constant squareShape; // static_assert with no message since c++17 static_assert(std::is_same_v); auto val = nodiscardFunc();ignore(val); ; return 0; } Output from compiling with -std=gnu++17 Added Cxx compiler flag -std=gnu++17 checkCxxDialect: success using -std=gnu++17 for Cxx dialect C++17, set new cxxDialectRange: ('c++11', 'c++17') Defined "HAVE_CXX_DIALECT_CXX11" to "1" Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX17" to "1" ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1726) Locate a functional Cxx preprocessor Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx...found Defined make macro "CXXPP" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -E -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1420) Locate a functional CUDA compiler Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /snap/bin/nvcc...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs: ['nvcc'] in listing of the specific search path: ['/Developer/NVIDIA/CUDA-6.5/bin'] Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs: ['nvcc'] in listing of the specific search path: ['/usr/local/cuda/bin'] Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' ============================================================================================= TESTING: checkDeviceHostCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:747) Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...). checkDeviceHostCompiler: checking CUDA accepts host compiler /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1490) Locate a functional HIP compiler Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /snap/bin/hipcc...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /snap/bin/opt/rocm/bin/hipcc...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkDeviceHostCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:747) Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...). ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1560) Locate a functional SYCL compiler ============================================================================================= TESTING: checkDeviceHostCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:747) Set the host compiler (HC) of the device compiler (DC) to the HC unless the DC already explicitly sets its HC. This may be needed if the default HC used by the DC is ancient and PETSc uses a different HC (e.g., through --with-cxx=...). ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1828) Locate a functional Fortran compiler Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpinfort...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/mpinfort...not found Unable to find programs: ['mpinfort'] in listing of the specific search path: ['/opt/intel/oneapi/mpi/2021.8.0/bin'] /opt/intel/oneapi/mpi/2021.8.0/bin: tune tune_fast impi_info IMB-RMA IMB-MPI1-GPU mpicxx mpiifort hydra_nameserver mpif90 mpigcc IMB-MT cpuinfo mpitune_fast mpiexec.hydra mpicc mpitune mpiexec mpirun hydra_bstrap_proxy mpif77 IMB-NBC IMB-P2P hydra_pmi_proxy mpigxx IMB-MPI1 mpiicpc mpifc mpiicc Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpiifort...found Defined make macro "FC" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpiifort" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiifort -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 127 stderr: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiifort: 1: eval: ifort: not found Source: program main end Error testing Fortran compiler: Cannot compile FC with /opt/intel/oneapi/mpi/2021.8.0/bin/mpiifort. MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiifort failed to compile Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiifort -show stdout: ifort -I"I_MPI_SUBSTITUTE_INSTALLDIR//include" -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -ldl -lrt -lpthread MPI compiler wrapper /opt/intel/oneapi/mpi/2021.8.0/bin/mpiifort is likely incorrect. Use --with-mpi-dir to indicate an alternate MPI. Deleting "FC" Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90...found Defined make macro "FC" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpif90" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm: No such file or directory collect2: error: ld returned 1 exit status: ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Testing executable /tmp/petsc-j92ofwaf/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1864) Locate a functional Fortran preprocessor Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90...found Defined make macro "FPP" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -E" Preprocessing source: #define foo 10 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -E -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running preprocessor:exit code 0 stdout: # 1 "/tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90" # 1 "" # 1 "" # 1 "/tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90" stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: #define foo 10 Preprocess output before filtering: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] : Preprocess output after filtering: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs]: Cannot preprocess Fortran with /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -E. Deleting "FPP" Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90...found Defined make macro "FPP" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --use cpp32" Preprocessing source: #define foo 10 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --use cpp32 -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running preprocessor: exit code 1 stdout: conftest.o: /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 \ /usr/include/finclude/math-vector-fortran.h stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] gfortran: warning: cpp32: linker input file unused because linking not done gfortran: error: cpp32: linker input file not found: No such file or directory Source: #define foo 10 Preprocess output before filtering: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] gfortran: warning: cpp32: linker input file unused because linking not done gfortran: error: cpp32: linker input file not found: No such file or directory : Preprocess output after filtering: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] gfortran: warning: cpp32: linker input file unused because linking not done gfortran: error: cpp32: linker input file not found: No such file or directory: Cannot preprocess Fortran with /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --use cpp32. Deleting "FPP" ============================================================================================= TESTING: checkFortranComments from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1883) Make sure fortran comment "!" works Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2054) check for large file support with 64bit offset ============================================================================================= TESTING: checkArchiver from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2153) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.38 Copyright (C) 2022 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.38 Copyright (C) 2022 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-j92ofwaf/config.setCompilers/libconf1.a /tmp/petsc-j92ofwaf/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-j92ofwaf/config.setCompilers/libconf1.a Possible ERROR while running ranlib:exit code 0 stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.38 Copyright (C) 2022 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.38 Copyright (C) 2022 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-j92ofwaf/config.setCompilers/libconf1.a /tmp/petsc-j92ofwaf/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-j92ofwaf/config.setCompilers/libconf1.a Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); (void)b; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -L/tmp/petsc-j92ofwaf/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2222) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2304) Check that the linker can produce shared libraries Checking shared linker /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc using flags ['-qmkshrobj'] Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc...found Defined make macro "LD_SHARED" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -show stdout: gcc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Trying C compiler flag -fPIC Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added C compiler flag -fPIC Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -qmkshrobj -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: gcc: error: unrecognized command-line option ���-qmkshrobj��� Rejecting linker flag -qmkshrobj due to nonzero status from link Linker output before filtering: gcc: error: unrecognized command-line option ���-qmkshrobj��� : Linker output after filtering: gcc: error: unrecognized command-line option ���-qmkshrobj���: Rejecting C linker flag -qmkshrobj due to gcc: error: unrecognized command-line option ���-qmkshrobj��� Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o: in function `_start': (.text+0x1b): undefined reference to `main' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o: in function `_start': (.text+0x1b): undefined reference to `main' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o: in function `_start': (.text+0x1b): undefined reference to `main' collect2: error: ld returned 1 exit status: Rejected C compiler flag -fPIC because it was not compatible with shared linker /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc using flags ['-qmkshrobj'] Trying C compiler flag Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -qmkshrobj /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: gcc: error: unrecognized command-line option ���-qmkshrobj��� Rejecting linker flag -qmkshrobj due to nonzero status from link Linker output before filtering: gcc: error: unrecognized command-line option ���-qmkshrobj��� : Linker output after filtering: gcc: error: unrecognized command-line option ���-qmkshrobj���: Rejecting C linker flag -qmkshrobj due to gcc: error: unrecognized command-line option ���-qmkshrobj��� Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o: in function `_start': (.text+0x1b): undefined reference to `main' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o: in function `_start': (.text+0x1b): undefined reference to `main' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o: in function `_start': (.text+0x1b): undefined reference to `main' collect2: error: ld returned 1 exit status: Rejected C compiler flag because it was not compatible with shared linker /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc using flags ['-qmkshrobj'] Deleting "LD_SHARED" Checking shared linker /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc using flags ['-shared'] Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc...found Defined make macro "LD_SHARED" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -show stdout: gcc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Trying C compiler flag -fPIC Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added C compiler flag -fPIC Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -shared -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Valid C linker flag -shared Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -L/tmp/petsc-j92ofwaf/config.setCompilers -lconftest Using shared linker /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc with flags ['-shared'] and library extension so ============================================================================================= TESTING: checkPIC from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2004) Determine the PIC option for each compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --help | head -n 20 stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -show stdout: gfortran -fallow-argument-mismatch -I"I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0" -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Trying FC compiler flag -fPIC for PIC code Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Added FC compiler flag -fPIC Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -show stdout: g++ -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Trying Cxx compiler flag -fPIC for PIC code Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -std=gnu++17 -fPIC Added Cxx compiler flag -fPIC Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2418) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3 ============================================================================================= TESTING: checkLibC from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2457) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2503) Check that the linker can dynamically load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC /tmp/petsc-j92ofwaf/config.libraries/conftest.o -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } void dummy(void) {_check_dlopen(); _check_dlsym(); _check_dlclose();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Checking dynamic linker /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc using flags ['-shared'] Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -shared -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -ldl Using dynamic linker /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc with flags ['-shared'] and library extension so ============================================================================================= TESTING: checkPragma from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:1963) Check for all available applicable languages whether they complain (including warnings!) about potentially unknown pragmas Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wunknown-pragmas /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wunknown-pragmas Added C compiler flag -Wunknown-pragmas Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wunknown-pragmas /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #pragma GCC poison TEST int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wunknown-pragmas -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wunknown-pragmas Added Cxx compiler flag -Wunknown-pragmas Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wunknown-pragmas -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #pragma GCC poison TEST int main() { ; return 0; } ============================================================================================= TESTING: checkAtFileOption from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2695) Check if linker supports @file option Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest @/tmp/petsc-j92ofwaf/config.setCompilers/optfile -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -ldl Valid C linker flag @/tmp/petsc-j92ofwaf/config.setCompilers/optfile Defined make macro "PCC_AT_FILE" to "1" ============================================================================================= TESTING: output from config.setCompilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/setCompilers.py:2552) Output module data as defines and substitutions Substituting "CC" with "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -std=gnu++17 -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "/opt/intel/oneapi/mpi/2021.8.0/bin/mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers took 1.296920 seconds ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/indexTypes.py:38) Determine the size of PETSc indices (32 or 64 bit), from -with-64-bit-indices Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes took 0.000169 seconds ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --version stdout: gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Defined make macro "C_VERSION" to "gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -show stdout: gcc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Defined make macro "MPICC_SHOW" to "gcc -I\"I_MPI_SUBSTITUTE_INSTALLDIR/include\" -L\"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release\" -L\"I_MPI_SUBSTITUTE_INSTALLDIR/lib\" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker \"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release\" -Xlinker -rpath -Xlinker \"I_MPI_SUBSTITUTE_INSTALLDIR/lib\" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --version stdout: gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected Gcc110plus compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --help | head -n 500 Trying C compiler flag -Wall Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-unknown-pragmas Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -Wno-lto-type-mismatch Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch Added C compiler flag -Wno-lto-type-mismatch Trying C compiler flag -Wno-stringop-overflow Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow Added C compiler flag -Wno-stringop-overflow Trying C compiler flag -fstack-protector Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -mfp16-format=ieee /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command-line option ���-mfp16-format=ieee��� Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -mfp16-format=ieee gcc: error: unrecognized command-line option ���-mfp16-format=ieee��� PETSc Error: No output file produced Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden Added C compiler flag -fvisibility=hidden Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -show stdout: gcc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Defined make macro "MPICC_SHOW" to "gcc -I\"I_MPI_SUBSTITUTE_INSTALLDIR/include\" -L\"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release\" -L\"I_MPI_SUBSTITUTE_INSTALLDIR/lib\" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker \"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release\" -Xlinker -rpath -Xlinker \"I_MPI_SUBSTITUTE_INSTALLDIR/lib\" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Trying C compiler flag -g3 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 Added C compiler flag -g3 Trying C compiler flag -O0 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 Added C compiler flag -O0 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --version stdout: g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Defined make macro "Cxx_VERSION" to "g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -show stdout: g++ -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Defined make macro "MPICXX_SHOW" to "g++ -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --version stdout: g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Trying Cxx compiler flag -Wall Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -Wno-lto-type-mismatch Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch Added Cxx compiler flag -Wno-lto-type-mismatch Trying Cxx compiler flag -fstack-protector Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden Added Cxx compiler flag -fvisibility=hidden Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -show stdout: g++ -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Defined make macro "MPICXX_SHOW" to "g++ -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --version stdout: g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Trying Cxx compiler flag -g Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g Added Cxx compiler flag -g Trying Cxx compiler flag -O0 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 Added Cxx compiler flag -O0 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Defined make macro "FC_VERSION" to "GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -show stdout: gfortran -fallow-argument-mismatch -I"I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0" -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Defined make macro "MPIFC_SHOW" to "gfortran -fallow-argument-mismatch -I"I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0" -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --help | head -n 20 stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran46plus compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran47plus compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Trying FC compiler flag -Wall Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC -Wall f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-none Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -ffree-line-length-none /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-none f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Added FC compiler flag -ffree-line-length-none Trying FC compiler flag -ffree-line-length-0 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-lto-type-mismatch Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Added FC compiler flag -Wno-lto-type-mismatch Trying FC compiler flag -Wno-unused-dummy-argument Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Added FC compiler flag -Wno-unused-dummy-argument Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -show stdout: gfortran -fallow-argument-mismatch -I"I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0" -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Defined make macro "MPIFC_SHOW" to "gfortran -fallow-argument-mismatch -I"I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0" -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --help | head -n 20 stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Trying FC compiler flag -g Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Added FC compiler flag -g Trying FC compiler flag -O0 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Added FC compiler flag -O0 ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu stdout: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Address sizes: 46 bits physical, 48 bits virtual Byte Order: Little Endian CPU(s): 24 On-line CPU(s) list: 0-23 Vendor ID: GenuineIntel Model name: 12th Gen Intel(R) Core(TM) i9-12900K CPU family: 6 Model: 151 Thread(s) per core: 2 Core(s) per socket: 16 Socket(s): 1 Stepping: 2 CPU max MHz: 5200.0000 CPU min MHz: 800.0000 BogoMIPS: 6374.40 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf tsc_known_freq pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb invpcid_single ssbd ibrs ibpb stibp ibrs_enhanced tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb intel_pt sha_ni xsaveopt xsavec xgetbv1 xsaves split_lock_detect avx_vnni dtherm ida arat pln pts hwp hwp_notify hwp_act_window hwp_epp hwp_pkg_req umip pku ospke waitpkg gfni vaes vpclmulqdq tme rdpid movdiri movdir64b fsrm md_clear serialize pconfig arch_lbr flush_l1d arch_capabilities Virtualization: VT-x L1d cache: 640 KiB (16 instances) L1i cache: 768 KiB (16 instances) L2 cache: 14 MiB (10 instances) L3 cache: 30 MiB (1 instance) NUMA node(s): 1 NUMA node0 CPU(s): 0-23 Vulnerability Itlb multihit: Not affected Vulnerability L1tf: Not affected Vulnerability Mds: Not affected Vulnerability Meltdown: Not affected Vulnerability Mmio stale data: Not affected Vulnerability Retbleed: Not affected Vulnerability Spec store bypass: Mitigation; Speculative Store Bypass disabled via prctl and seccomp Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Enhanced IBRS, IBPB conditional, RSB filling, PBRSB-eIBRS SW sequence Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Not affected ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilerFlags -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilerFlags/conftest.c -E -dM stdout: #define __DBL_MIN_EXP__ (-1021) #define __UINT_LEAST16_MAX__ 0xffff #define __ATOMIC_ACQUIRE 2 #define __FLT128_MAX_10_EXP__ 4932 #define __FLT_MIN__ 1.17549435082228750796873653722224568e-38F #define __GCC_IEC_559_COMPLEX 2 #define __UINT_LEAST8_TYPE__ unsigned char #define __SIZEOF_FLOAT80__ 16 #define __INTMAX_C(c) c ## L #define __CHAR_BIT__ 8 #define __UINT8_MAX__ 0xff #define __SCHAR_WIDTH__ 8 #define __WINT_MAX__ 0xffffffffU #define __FLT32_MIN_EXP__ (-125) #define __ORDER_LITTLE_ENDIAN__ 1234 #define __SIZE_MAX__ 0xffffffffffffffffUL #define __WCHAR_MAX__ 0x7fffffff #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __DBL_DENORM_MIN__ ((double)4.94065645841246544176568792868221372e-324L) #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_IEC_559 2 #define __FLT32X_DECIMAL_DIG__ 17 #define __FLT_EVAL_METHOD__ 0 #define __FLT64_DECIMAL_DIG__ 17 #define __CET__ 3 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __UINT_FAST64_MAX__ 0xffffffffffffffffUL #define __SIG_ATOMIC_TYPE__ int #define __DBL_MIN_10_EXP__ (-307) #define __FINITE_MATH_ONLY__ 0 #define __FLT32X_MAX_EXP__ 1024 #define __FLT32_HAS_DENORM__ 1 #define __UINT_FAST8_MAX__ 0xff #define __FLT32_MAX_10_EXP__ 38 #define __DEC64_MAX_EXP__ 385 #define __INT8_C(c) c #define __INT_LEAST8_WIDTH__ 8 #define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL #define __SHRT_MAX__ 0x7fff #define __LDBL_MAX__ 1.18973149535723176502126385303097021e+4932L #define __FLT64X_MAX_10_EXP__ 4932 #define __LDBL_IS_IEC_60559__ 2 #define __FLT64X_HAS_QUIET_NAN__ 1 #define __UINT_LEAST8_MAX__ 0xff #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __FLT128_DENORM_MIN__ 6.47517511943802511092443895822764655e-4966F128 #define __UINTMAX_TYPE__ long unsigned int #define __linux 1 #define __DEC32_EPSILON__ 1E-6DF #define __FLT_EVAL_METHOD_TS_18661_3__ 0 #define __unix 1 #define __UINT32_MAX__ 0xffffffffU #define __FLT128_MIN_EXP__ (-16381) #define __WINT_MIN__ 0U #define __FLT128_MIN_10_EXP__ (-4931) #define __FLT32X_IS_IEC_60559__ 2 #define __INT_LEAST16_WIDTH__ 16 #define __SCHAR_MAX__ 0x7f #define __FLT128_MANT_DIG__ 113 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __INT64_C(c) c ## L #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __FLT32X_MANT_DIG__ 53 #define __USER_LABEL_PREFIX__ #define __FLT64X_EPSILON__ 1.08420217248550443400745280086994171e-19F64x #define __STDC_HOSTED__ 1 #define __DEC64_MIN_EXP__ (-382) #define __DBL_DIG__ 15 #define __FLT32_DIG__ 6 #define __FLT_EPSILON__ 1.19209289550781250000000000000000000e-7F #define __SHRT_WIDTH__ 16 #define __FLT32_IS_IEC_60559__ 2 #define __LDBL_MIN__ 3.36210314311209350626267781732175260e-4932L #define __STDC_UTF_16__ 1 #define __DBL_IS_IEC_60559__ 2 #define __DEC32_MAX__ 9.999999E96DF #define __FLT64X_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951F64x #define __FLT32X_HAS_INFINITY__ 1 #define __INT32_MAX__ 0x7fffffff #define __unix__ 1 #define __INT_WIDTH__ 32 #define __SIZEOF_LONG__ 8 #define __STDC_IEC_559__ 1 #define __STDC_ISO_10646__ 201706L #define __UINT16_C(c) c #define __DECIMAL_DIG__ 21 #define __STDC_IEC_559_COMPLEX__ 1 #define __FLT64_EPSILON__ 2.22044604925031308084726333618164062e-16F64 #define __gnu_linux__ 1 #define __FLT128_IS_IEC_60559__ 2 #define __FLT64X_MIN_10_EXP__ (-4931) #define __LDBL_HAS_QUIET_NAN__ 1 #define __FLT64_MANT_DIG__ 53 #define __FLT64X_MANT_DIG__ 64 #define __GNUC__ 11 #define __MMX__ 1 #define __FLT_HAS_DENORM__ 1 #define __SIZEOF_LONG_DOUBLE__ 16 #define __BIGGEST_ALIGNMENT__ 16 #define __FLT64_MAX_10_EXP__ 308 #define __DBL_MAX__ ((double)1.79769313486231570814527423731704357e+308L) #define __INT_FAST32_MAX__ 0x7fffffffffffffffL #define __DBL_HAS_INFINITY__ 1 #define __SIZEOF_FLOAT__ 4 #define __HAVE_SPECULATION_SAFE_VALUE 1 #define __DEC32_MIN_EXP__ (-94) #define __INTPTR_WIDTH__ 64 #define __FLT64X_HAS_INFINITY__ 1 #define __UINT_LEAST32_MAX__ 0xffffffffU #define __FLT32X_HAS_DENORM__ 1 #define __INT_FAST16_TYPE__ long int #define __MMX_WITH_SSE__ 1 #define __LDBL_HAS_DENORM__ 1 #define __FLT128_HAS_INFINITY__ 1 #define __DEC32_MIN__ 1E-95DF #define __DBL_MAX_EXP__ 1024 #define __WCHAR_WIDTH__ 32 #define __FLT32_MAX__ 3.40282346638528859811704183484516925e+38F32 #define __DEC128_EPSILON__ 1E-33DL #define __SSE2_MATH__ 1 #define __ATOMIC_HLE_RELEASE 131072 #define __PTRDIFF_MAX__ 0x7fffffffffffffffL #define __amd64 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __LONG_LONG_MAX__ 0x7fffffffffffffffLL #define __SIZEOF_SIZE_T__ 8 #define __FLT64X_MIN_EXP__ (-16381) #define __SIZEOF_WINT_T__ 4 #define __LONG_LONG_WIDTH__ 64 #define __FLT32_MAX_EXP__ 128 #define __GXX_ABI_VERSION 1016 #define __FLT_MIN_EXP__ (-125) #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __INT16_MAX__ 0x7fff #define __x86_64 1 #define __INT_FAST64_TYPE__ long int #define __FLT64_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F64 #define __DBL_MIN__ ((double)2.22507385850720138309023271733240406e-308L) #define __FLT128_EPSILON__ 1.92592994438723585305597794258492732e-34F128 #define __FLT64X_NORM_MAX__ 1.18973149535723176502126385303097021e+4932F64x #define __SIZEOF_POINTER__ 8 #define __LP64__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __FLT32X_EPSILON__ 2.22044604925031308084726333618164062e-16F32x #define __DECIMAL_BID_FORMAT__ 1 #define __FLT64_MIN_EXP__ (-1021) #define __FLT64_MIN_10_EXP__ (-307) #define __FLT64X_DECIMAL_DIG__ 21 #define __DEC128_MIN__ 1E-6143DL #define __REGISTER_PREFIX__ #define __UINT16_MAX__ 0xffff #define __DBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __FLT32_MIN__ 1.17549435082228750796873653722224568e-38F32 #define __UINT8_TYPE__ unsigned char #define __FLT_DIG__ 6 #define __NO_INLINE__ 1 #define __DEC_EVAL_METHOD__ 2 #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __FLT_MANT_DIG__ 24 #define __LDBL_DECIMAL_DIG__ 21 #define __VERSION__ "11.3.0" #define __UINT64_C(c) c ## UL #define _STDC_PREDEF_H 1 #define __INT_LEAST32_MAX__ 0x7fffffff #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __FLT128_MAX_EXP__ 16384 #define __FLT32_MANT_DIG__ 24 #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __STDC_IEC_60559_COMPLEX__ 201404L #define __FLT128_HAS_DENORM__ 1 #define __FLT32_DECIMAL_DIG__ 9 #define __FLT128_DIG__ 33 #define __INT32_C(c) c #define __DEC64_EPSILON__ 1E-15DD #define __ORDER_PDP_ENDIAN__ 3412 #define __DEC128_MIN_EXP__ (-6142) #define __INT_FAST32_TYPE__ long int #define __UINT_LEAST16_TYPE__ short unsigned int #define unix 1 #define __SIZE_TYPE__ long unsigned int #define __UINT64_MAX__ 0xffffffffffffffffUL #define __FLT_IS_IEC_60559__ 2 #define __GNUC_WIDE_EXECUTION_CHARSET_NAME "UTF-32LE" #define __FLT64X_DIG__ 18 #define __INT8_TYPE__ signed char #define __ELF__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __UINT32_TYPE__ unsigned int #define __FLT_RADIX__ 2 #define __INT_LEAST16_TYPE__ short int #define __LDBL_EPSILON__ 1.08420217248550443400745280086994171e-19L #define __UINTMAX_C(c) c ## UL #define __SSE_MATH__ 1 #define __k8 1 #define __FLT32X_MIN__ 2.22507385850720138309023271733240406e-308F32x #define __SIG_ATOMIC_MAX__ 0x7fffffff #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __STDC_IEC_60559_BFP__ 201404L #define __SIZEOF_PTRDIFF_T__ 8 #define __LDBL_DIG__ 18 #define __FLT64_IS_IEC_60559__ 2 #define __x86_64__ 1 #define __FLT32X_MIN_EXP__ (-1021) #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __INT_FAST16_MAX__ 0x7fffffffffffffffL #define __FLT64_DIG__ 15 #define __UINT_FAST32_MAX__ 0xffffffffffffffffUL #define __UINT_LEAST64_TYPE__ long unsigned int #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MAX_10_EXP__ 38 #define __LONG_MAX__ 0x7fffffffffffffffL #define __FLT64X_HAS_DENORM__ 1 #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __FLT_HAS_INFINITY__ 1 #define __GNUC_EXECUTION_CHARSET_NAME "UTF-8" #define __UINT_FAST16_TYPE__ long unsigned int #define __DEC64_MAX__ 9.999999999999999E384DD #define __INT_FAST32_WIDTH__ 64 #define __CHAR16_TYPE__ short unsigned int #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZE_WIDTH__ 64 #define __SEG_FS 1 #define __INT_LEAST16_MAX__ 0x7fff #define __DEC64_MANT_DIG__ 16 #define __INT64_MAX__ 0x7fffffffffffffffL #define __SEG_GS 1 #define __FLT32_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F32 #define __SIG_ATOMIC_WIDTH__ 32 #define __INT_LEAST64_TYPE__ long int #define __INT16_TYPE__ short int #define __INT_LEAST8_TYPE__ signed char #define __STDC_VERSION__ 201710L #define __SIZEOF_INT__ 4 #define __DEC32_MAX_EXP__ 97 #define __INT_FAST8_MAX__ 0x7f #define __FLT128_MAX__ 1.18973149535723176508575932662800702e+4932F128 #define __INTPTR_MAX__ 0x7fffffffffffffffL #define linux 1 #define __FLT64_HAS_QUIET_NAN__ 1 #define __FLT32_MIN_10_EXP__ (-37) #define __FLT32X_DIG__ 15 #define __PTRDIFF_WIDTH__ 64 #define __LDBL_MANT_DIG__ 64 #define __FLT64_HAS_INFINITY__ 1 #define __FLT64X_MAX__ 1.18973149535723176502126385303097021e+4932F64x #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __code_model_small__ 1 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __DEC32_MANT_DIG__ 7 #define __k8__ 1 #define __INTPTR_TYPE__ long int #define __UINT16_TYPE__ short unsigned int #define __WCHAR_TYPE__ int #define __pic__ 2 #define __UINTPTR_MAX__ 0xffffffffffffffffUL #define __INT_FAST64_WIDTH__ 64 #define __INT_FAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __FLT_NORM_MAX__ 3.40282346638528859811704183484516925e+38F #define __FLT32_HAS_INFINITY__ 1 #define __FLT64X_MAX_EXP__ 16384 #define __UINT_FAST64_TYPE__ long unsigned int #define __INT_MAX__ 0x7fffffff #define __linux__ 1 #define __INT64_TYPE__ long int #define __FLT_MAX_EXP__ 128 #define __ORDER_BIG_ENDIAN__ 4321 #define __DBL_MANT_DIG__ 53 #define __SIZEOF_FLOAT128__ 16 #define __INT_LEAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __DEC64_MIN__ 1E-383DD #define __WINT_TYPE__ unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __SIZEOF_SHORT__ 2 #define __FLT32_NORM_MAX__ 3.40282346638528859811704183484516925e+38F32 #define __SSE__ 1 #define __LDBL_MIN_EXP__ (-16381) #define __FLT64_MAX__ 1.79769313486231570814527423731704357e+308F64 #define __amd64__ 1 #define __WINT_WIDTH__ 32 #define __INT_LEAST8_MAX__ 0x7f #define __INT_LEAST64_WIDTH__ 64 #define __LDBL_MAX_EXP__ 16384 #define __FLT32X_MAX_10_EXP__ 308 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __FLT64X_IS_IEC_60559__ 2 #define __LDBL_MAX_10_EXP__ 4932 #define __ATOMIC_RELAXED 0 #define __DBL_EPSILON__ ((double)2.22044604925031308084726333618164062e-16L) #define __FLT128_MIN__ 3.36210314311209350626267781732175260e-4932F128 #define _LP64 1 #define __UINT8_C(c) c #define __FLT64_MAX_EXP__ 1024 #define __INT_LEAST32_TYPE__ int #define __SIZEOF_WCHAR_T__ 4 #define __UINT64_TYPE__ long unsigned int #define __GNUC_PATCHLEVEL__ 0 #define __FLT128_NORM_MAX__ 1.18973149535723176508575932662800702e+4932F128 #define __FLT64_NORM_MAX__ 1.79769313486231570814527423731704357e+308F64 #define __FLT128_HAS_QUIET_NAN__ 1 #define __INTMAX_MAX__ 0x7fffffffffffffffL #define __INT_FAST8_TYPE__ signed char #define __FLT64X_MIN__ 3.36210314311209350626267781732175260e-4932F64x #define __GNUC_STDC_INLINE__ 1 #define __FLT64_HAS_DENORM__ 1 #define __FLT32_EPSILON__ 1.19209289550781250000000000000000000e-7F32 #define __DBL_DECIMAL_DIG__ 17 #define __STDC_UTF_32__ 1 #define __INT_FAST8_WIDTH__ 8 #define __FXSR__ 1 #define __FLT32X_MAX__ 1.79769313486231570814527423731704357e+308F32x #define __DBL_NORM_MAX__ ((double)1.79769313486231570814527423731704357e+308L) #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __INTMAX_WIDTH__ 64 #define __UINT32_C(c) c ## U #define __FLT_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F #define __INT8_MAX__ 0x7f #define __LONG_WIDTH__ 64 #define __PIC__ 2 #define __UINT_FAST32_TYPE__ long unsigned int #define __FLT32X_NORM_MAX__ 1.79769313486231570814527423731704357e+308F32x #define __CHAR32_TYPE__ unsigned int #define __FLT_MAX__ 3.40282346638528859811704183484516925e+38F #define __SSE2__ 1 #define __INT32_TYPE__ int #define __SIZEOF_DOUBLE__ 8 #define __FLT_MIN_10_EXP__ (-37) #define __FLT64_MIN__ 2.22507385850720138309023271733240406e-308F64 #define __INT_LEAST32_WIDTH__ 32 #define __INTMAX_TYPE__ long int #define __DEC128_MAX_EXP__ 6145 #define __FLT32X_HAS_QUIET_NAN__ 1 #define __ATOMIC_CONSUME 1 #define __GNUC_MINOR__ 3 #define __INT_FAST16_WIDTH__ 64 #define __UINTMAX_MAX__ 0xffffffffffffffffUL #define __FLT32X_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F32x #define __DBL_MAX_10_EXP__ 308 #define __LDBL_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951L #define __INT16_C(c) c #define __STDC__ 1 #define __PTRDIFF_TYPE__ long int #define __ATOMIC_SEQ_CST 5 #define __FLT32X_MIN_10_EXP__ (-307) #define __UINTPTR_TYPE__ long unsigned int #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __LDBL_MIN_10_EXP__ (-4931) #define __SIZEOF_LONG_LONG__ 8 #define __FLT128_DECIMAL_DIG__ 36 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __FLT32_HAS_QUIET_NAN__ 1 #define __FLT_DECIMAL_DIG__ 9 #define __UINT_FAST16_MAX__ 0xffffffffffffffffUL #define __LDBL_NORM_MAX__ 1.18973149535723176502126385303097021e+4932L #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __UINT_FAST8_TYPE__ unsigned char #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_RELEASE 3 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilerFlags -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilerFlags/conftest.cc -E -dM stdout: #define __DBL_MIN_EXP__ (-1021) #define __cpp_attributes 200809L #define __cpp_nontype_template_parameter_auto 201606L #define __UINT_LEAST16_MAX__ 0xffff #define __ATOMIC_ACQUIRE 2 #define __FLT128_MAX_10_EXP__ 4932 #define __FLT_MIN__ 1.17549435082228750796873653722224568e-38F #define __GCC_IEC_559_COMPLEX 2 #define __cpp_aggregate_nsdmi 201304L #define __UINT_LEAST8_TYPE__ unsigned char #define __SIZEOF_FLOAT80__ 16 #define __INTMAX_C(c) c ## L #define __CHAR_BIT__ 8 #define __UINT8_MAX__ 0xff #define __SCHAR_WIDTH__ 8 #define __WINT_MAX__ 0xffffffffU #define __FLT32_MIN_EXP__ (-125) #define __cpp_static_assert 201411L #define __ORDER_LITTLE_ENDIAN__ 1234 #define __SIZE_MAX__ 0xffffffffffffffffUL #define __WCHAR_MAX__ 0x7fffffff #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __DBL_DENORM_MIN__ double(4.94065645841246544176568792868221372e-324L) #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_IEC_559 2 #define __FLT32X_DECIMAL_DIG__ 17 #define __FLT_EVAL_METHOD__ 0 #define __cpp_binary_literals 201304L #define __FLT64_DECIMAL_DIG__ 17 #define __CET__ 3 #define __cpp_noexcept_function_type 201510L #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __cpp_variadic_templates 200704L #define __UINT_FAST64_MAX__ 0xffffffffffffffffUL #define __SIG_ATOMIC_TYPE__ int #define __DBL_MIN_10_EXP__ (-307) #define __FINITE_MATH_ONLY__ 0 #define __cpp_variable_templates 201304L #define __FLT32X_MAX_EXP__ 1024 #define __FLT32_HAS_DENORM__ 1 #define __UINT_FAST8_MAX__ 0xff #define __cpp_rvalue_reference 200610L #define __cpp_nested_namespace_definitions 201411L #define __DEC64_MAX_EXP__ 385 #define __INT8_C(c) c #define __INT_LEAST8_WIDTH__ 8 #define __cpp_variadic_using 201611L #define __UINT_LEAST64_MAX__ 0xffffffffffffffffUL #define __INT_LEAST8_MAX__ 0x7f #define __cpp_capture_star_this 201603L #define __SHRT_MAX__ 0x7fff #define __LDBL_MAX__ 1.18973149535723176502126385303097021e+4932L #define __FLT64X_MAX_10_EXP__ 4932 #define __cpp_if_constexpr 201606L #define __LDBL_IS_IEC_60559__ 2 #define __FLT64X_HAS_QUIET_NAN__ 1 #define __UINT_LEAST8_MAX__ 0xff #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __FLT128_DENORM_MIN__ 6.47517511943802511092443895822764655e-4966F128 #define __UINTMAX_TYPE__ long unsigned int #define __linux 1 #define __DEC32_EPSILON__ 1E-6DF #define __FLT_EVAL_METHOD_TS_18661_3__ 0 #define __unix 1 #define __UINT32_MAX__ 0xffffffffU #define __GXX_EXPERIMENTAL_CXX0X__ 1 #define __FLT128_MIN_EXP__ (-16381) #define __WINT_MIN__ 0U #define __FLT128_MIN_10_EXP__ (-4931) #define __FLT32X_IS_IEC_60559__ 2 #define __INT_LEAST16_WIDTH__ 16 #define __SCHAR_MAX__ 0x7f #define __FLT128_MANT_DIG__ 113 #define __WCHAR_MIN__ (-__WCHAR_MAX__ - 1) #define __INT64_C(c) c ## L #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __FLT32X_MANT_DIG__ 53 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __cpp_aligned_new 201606L #define __USER_LABEL_PREFIX__ #define __FLT32_MAX_10_EXP__ 38 #define __FLT64X_EPSILON__ 1.08420217248550443400745280086994171e-19F64x #define __STDC_HOSTED__ 1 #define __DEC64_MIN_EXP__ (-382) #define __cpp_decltype_auto 201304L #define __DBL_DIG__ 15 #define __FLT32_DIG__ 6 #define __FLT_EPSILON__ 1.19209289550781250000000000000000000e-7F #define __GXX_WEAK__ 1 #define __SHRT_WIDTH__ 16 #define __FLT32_IS_IEC_60559__ 2 #define __LDBL_MIN__ 3.36210314311209350626267781732175260e-4932L #define __DBL_IS_IEC_60559__ 2 #define __DEC32_MAX__ 9.999999E96DF #define __cpp_threadsafe_static_init 200806L #define __cpp_enumerator_attributes 201411L #define __FLT64X_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951F64x #define __FLT32X_HAS_INFINITY__ 1 #define __INT32_MAX__ 0x7fffffff #define __unix__ 1 #define __INT_WIDTH__ 32 #define __SIZEOF_LONG__ 8 #define __STDC_IEC_559__ 1 #define __STDC_ISO_10646__ 201706L #define __UINT16_C(c) c #define __DECIMAL_DIG__ 21 #define __STDC_IEC_559_COMPLEX__ 1 #define __FLT64_EPSILON__ 2.22044604925031308084726333618164062e-16F64 #define __gnu_linux__ 1 #define __INT16_MAX__ 0x7fff #define __FLT64_MIN_EXP__ (-1021) #define __FLT64X_MIN_10_EXP__ (-4931) #define __LDBL_HAS_QUIET_NAN__ 1 #define __FLT64_MANT_DIG__ 53 #define __FLT64X_MANT_DIG__ 64 #define __GNUC__ 11 #define __GXX_RTTI 1 #define __MMX__ 1 #define __FLT_HAS_DENORM__ 1 #define __SIZEOF_LONG_DOUBLE__ 16 #define __BIGGEST_ALIGNMENT__ 16 #define __STDC_UTF_16__ 1 #define __FLT64_MAX_10_EXP__ 308 #define __cpp_delegating_constructors 200604L #define __FLT32_HAS_INFINITY__ 1 #define __DBL_MAX__ double(1.79769313486231570814527423731704357e+308L) #define __cpp_raw_strings 200710L #define __INT_FAST32_MAX__ 0x7fffffffffffffffL #define __DBL_HAS_INFINITY__ 1 #define __SIZEOF_FLOAT__ 4 #define __HAVE_SPECULATION_SAFE_VALUE 1 #define __cpp_fold_expressions 201603L #define __DEC32_MIN_EXP__ (-94) #define __INTPTR_WIDTH__ 64 #define __FLT64X_HAS_INFINITY__ 1 #define __UINT_LEAST32_MAX__ 0xffffffffU #define __FLT32X_HAS_DENORM__ 1 #define __INT_FAST16_TYPE__ long int #define __MMX_WITH_SSE__ 1 #define __LDBL_HAS_DENORM__ 1 #define __cplusplus 201703L #define __cpp_ref_qualifiers 200710L #define __DEC32_MIN__ 1E-95DF #define __DEPRECATED 1 #define __cpp_rvalue_references 200610L #define __DBL_MAX_EXP__ 1024 #define __WCHAR_WIDTH__ 32 #define __FLT32_MAX__ 3.40282346638528859811704183484516925e+38F32 #define __DEC128_EPSILON__ 1E-33DL #define __SSE2_MATH__ 1 #define __ATOMIC_HLE_RELEASE 131072 #define __PTRDIFF_MAX__ 0x7fffffffffffffffL #define __amd64 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __GNUG__ 11 #define __LONG_LONG_MAX__ 0x7fffffffffffffffLL #define __SIZEOF_SIZE_T__ 8 #define __cpp_nsdmi 200809L #define __FLT64X_MIN_EXP__ (-16381) #define __SIZEOF_WINT_T__ 4 #define __LONG_LONG_WIDTH__ 64 #define __cpp_initializer_lists 200806L #define __FLT32_MAX_EXP__ 128 #define __cpp_hex_float 201603L #define __GXX_ABI_VERSION 1016 #define __FLT128_HAS_INFINITY__ 1 #define __FLT_MIN_EXP__ (-125) #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __x86_64 1 #define __cpp_lambdas 200907L #define __INT_FAST64_TYPE__ long int #define __FLT64_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F64 #define __cpp_template_auto 201606L #define __DBL_MIN__ double(2.22507385850720138309023271733240406e-308L) #define __FLT128_EPSILON__ 1.92592994438723585305597794258492732e-34F128 #define __FLT64X_NORM_MAX__ 1.18973149535723176502126385303097021e+4932F64x #define __SIZEOF_POINTER__ 8 #define __LP64__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __FLT32X_EPSILON__ 2.22044604925031308084726333618164062e-16F32x #define __DECIMAL_BID_FORMAT__ 1 #define __FLT64_MIN_10_EXP__ (-307) #define __FLT64X_DECIMAL_DIG__ 21 #define __DEC128_MIN__ 1E-6143DL #define __REGISTER_PREFIX__ #define __UINT16_MAX__ 0xffff #define __LDBL_HAS_INFINITY__ 1 #define __FLT32_MIN__ 1.17549435082228750796873653722224568e-38F32 #define __UINT8_TYPE__ unsigned char #define __FLT_DIG__ 6 #define __NO_INLINE__ 1 #define __DEC_EVAL_METHOD__ 2 #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __FLT_MANT_DIG__ 24 #define __LDBL_DECIMAL_DIG__ 21 #define __VERSION__ "11.3.0" #define __UINT64_C(c) c ## UL #define __cpp_unicode_characters 201411L #define _STDC_PREDEF_H 1 #define __INT_LEAST32_MAX__ 0x7fffffff #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __FLT128_MAX_EXP__ 16384 #define __FLT32_MANT_DIG__ 24 #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __STDC_IEC_60559_COMPLEX__ 201404L #define __cpp_aggregate_bases 201603L #define __FLT128_HAS_DENORM__ 1 #define __FLT32_DECIMAL_DIG__ 9 #define __FLT128_DIG__ 33 #define __INT32_C(c) c #define __DEC64_EPSILON__ 1E-15DD #define __ORDER_PDP_ENDIAN__ 3412 #define __DEC128_MIN_EXP__ (-6142) #define __INT_FAST32_TYPE__ long int #define __UINT_LEAST16_TYPE__ short unsigned int #define unix 1 #define __DBL_HAS_DENORM__ 1 #define __cpp_rtti 199711L #define __SIZE_TYPE__ long unsigned int #define __UINT64_MAX__ 0xffffffffffffffffUL #define __FLT_IS_IEC_60559__ 2 #define __GNUC_WIDE_EXECUTION_CHARSET_NAME "UTF-32LE" #define __FLT64X_DIG__ 18 #define __INT8_TYPE__ signed char #define __cpp_digit_separators 201309L #define __ELF__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __UINT32_TYPE__ unsigned int #define __FLT_RADIX__ 2 #define __INT_LEAST16_TYPE__ short int #define __LDBL_EPSILON__ 1.08420217248550443400745280086994171e-19L #define __UINTMAX_C(c) c ## UL #define __GLIBCXX_BITSIZE_INT_N_0 128 #define __k8 1 #define __FLT32X_MIN__ 2.22507385850720138309023271733240406e-308F32x #define __SIG_ATOMIC_MAX__ 0x7fffffff #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __STDC_IEC_60559_BFP__ 201404L #define __SIZEOF_PTRDIFF_T__ 8 #define __LDBL_DIG__ 18 #define __FLT64_IS_IEC_60559__ 2 #define __x86_64__ 1 #define __FLT32X_MIN_EXP__ (-1021) #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __INT_FAST16_MAX__ 0x7fffffffffffffffL #define __FLT64_DIG__ 15 #define __UINT_FAST32_MAX__ 0xffffffffffffffffUL #define __UINT_LEAST64_TYPE__ long unsigned int #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MAX_10_EXP__ 38 #define __LONG_MAX__ 0x7fffffffffffffffL #define __FLT64X_HAS_DENORM__ 1 #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __FLT_HAS_INFINITY__ 1 #define __GNUC_EXECUTION_CHARSET_NAME "UTF-8" #define __cpp_unicode_literals 200710L #define __UINT_FAST16_TYPE__ long unsigned int #define __DEC64_MAX__ 9.999999999999999E384DD #define __INT_FAST32_WIDTH__ 64 #define __CHAR16_TYPE__ short unsigned int #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZE_WIDTH__ 64 #define __SEG_FS 1 #define __INT_LEAST16_MAX__ 0x7fff #define __DEC64_MANT_DIG__ 16 #define __INT64_MAX__ 0x7fffffffffffffffL #define __SEG_GS 1 #define __FLT32_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F32 #define __SIG_ATOMIC_WIDTH__ 32 #define __INT_LEAST64_TYPE__ long int #define __INT16_TYPE__ short int #define __INT_LEAST8_TYPE__ signed char #define __cpp_structured_bindings 201606L #define __SIZEOF_INT__ 4 #define __DEC32_MAX_EXP__ 97 #define __INT_FAST8_MAX__ 0x7f #define __FLT128_MAX__ 1.18973149535723176508575932662800702e+4932F128 #define __INTPTR_MAX__ 0x7fffffffffffffffL #define __cpp_sized_deallocation 201309L #define __cpp_guaranteed_copy_elision 201606L #define linux 1 #define __FLT64_HAS_QUIET_NAN__ 1 #define __FLT32_MIN_10_EXP__ (-37) #define __EXCEPTIONS 1 #define __PTRDIFF_WIDTH__ 64 #define __LDBL_MANT_DIG__ 64 #define __cpp_range_based_for 201603L #define __FLT64_HAS_INFINITY__ 1 #define __FLT64X_MAX__ 1.18973149535723176502126385303097021e+4932F64x #define __STDCPP_DEFAULT_NEW_ALIGNMENT__ 16 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __code_model_small__ 1 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __cpp_nontype_template_args 201411L #define __DEC32_MANT_DIG__ 7 #define __cpp_return_type_deduction 201304L #define __k8__ 1 #define __INTPTR_TYPE__ long int #define __UINT16_TYPE__ short unsigned int #define __WCHAR_TYPE__ int #define __pic__ 2 #define __UINTPTR_MAX__ 0xffffffffffffffffUL #define __INT_FAST64_WIDTH__ 64 #define __cpp_decltype 200707L #define __INT_FAST64_MAX__ 0x7fffffffffffffffL #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __FLT_NORM_MAX__ 3.40282346638528859811704183484516925e+38F #define __FLT64X_MAX_EXP__ 16384 #define __UINT_FAST64_TYPE__ long unsigned int #define __cpp_inline_variables 201606L #define __INT_MAX__ 0x7fffffff #define __linux__ 1 #define __INT64_TYPE__ long int #define __FLT_MAX_EXP__ 128 #define __ORDER_BIG_ENDIAN__ 4321 #define __DBL_MANT_DIG__ 53 #define __cpp_inheriting_constructors 201511L #define __SIZEOF_FLOAT128__ 16 #define __INT_LEAST64_MAX__ 0x7fffffffffffffffL #define __DEC64_MIN__ 1E-383DD #define __WINT_TYPE__ unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __SIZEOF_SHORT__ 2 #define __FLT32_NORM_MAX__ 3.40282346638528859811704183484516925e+38F32 #define __SSE__ 1 #define __LDBL_MIN_EXP__ (-16381) #define __FLT64_MAX__ 1.79769313486231570814527423731704357e+308F64 #define __amd64__ 1 #define __WINT_WIDTH__ 32 #define __INT_LEAST64_WIDTH__ 64 #define __LDBL_MAX_EXP__ 16384 #define __FLT32X_MAX_10_EXP__ 308 #define __SSP__ 1 #define __SIZEOF_INT128__ 16 #define __FLT64X_IS_IEC_60559__ 2 #define __LDBL_MAX_10_EXP__ 4932 #define __ATOMIC_RELAXED 0 #define __DBL_EPSILON__ double(2.22044604925031308084726333618164062e-16L) #define __FLT128_MIN__ 3.36210314311209350626267781732175260e-4932F128 #define _LP64 1 #define __UINT8_C(c) c #define __FLT64_MAX_EXP__ 1024 #define __INT_LEAST32_TYPE__ int #define __SIZEOF_WCHAR_T__ 4 #define __GNUC_PATCHLEVEL__ 0 #define __FLT128_NORM_MAX__ 1.18973149535723176508575932662800702e+4932F128 #define __FLT64_NORM_MAX__ 1.79769313486231570814527423731704357e+308F64 #define __FLT128_HAS_QUIET_NAN__ 1 #define __INTMAX_MAX__ 0x7fffffffffffffffL #define __INT_FAST8_TYPE__ signed char #define __cpp_namespace_attributes 201411L #define __FLT64X_MIN__ 3.36210314311209350626267781732175260e-4932F64x #define __STDCPP_THREADS__ 1 #define __GNUC_STDC_INLINE__ 1 #define __FLT64_HAS_DENORM__ 1 #define __FLT32_EPSILON__ 1.19209289550781250000000000000000000e-7F32 #define __DBL_DECIMAL_DIG__ 17 #define __STDC_UTF_32__ 1 #define __INT_FAST8_WIDTH__ 8 #define __FXSR__ 1 #define __FLT32X_MAX__ 1.79769313486231570814527423731704357e+308F32x #define __DBL_NORM_MAX__ double(1.79769313486231570814527423731704357e+308L) #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __INTMAX_WIDTH__ 64 #define __cpp_runtime_arrays 198712L #define __UINT64_TYPE__ long unsigned int #define __UINT32_C(c) c ## U #define __cpp_alias_templates 200704L #define __FLT_DENORM_MIN__ 1.40129846432481707092372958328991613e-45F #define __FLT128_IS_IEC_60559__ 2 #define __INT8_MAX__ 0x7f #define __LONG_WIDTH__ 64 #define __PIC__ 2 #define __UINT_FAST32_TYPE__ long unsigned int #define __FLT32X_NORM_MAX__ 1.79769313486231570814527423731704357e+308F32x #define __CHAR32_TYPE__ unsigned int #define __FLT_MAX__ 3.40282346638528859811704183484516925e+38F #define __cpp_constexpr 201603L #define __SSE2__ 1 #define __cpp_deduction_guides 201703L #define __INT32_TYPE__ int #define __SIZEOF_DOUBLE__ 8 #define __cpp_exceptions 199711L #define __FLT_MIN_10_EXP__ (-37) #define __FLT64_MIN__ 2.22507385850720138309023271733240406e-308F64 #define __INT_LEAST32_WIDTH__ 32 #define __INTMAX_TYPE__ long int #define __DEC128_MAX_EXP__ 6145 #define __FLT32X_HAS_QUIET_NAN__ 1 #define __ATOMIC_CONSUME 1 #define __GNUC_MINOR__ 3 #define __GLIBCXX_TYPE_INT_N_0 __int128 #define __INT_FAST16_WIDTH__ 64 #define __UINTMAX_MAX__ 0xffffffffffffffffUL #define __FLT32X_DENORM_MIN__ 4.94065645841246544176568792868221372e-324F32x #define __cpp_template_template_args 201611L #define __DBL_MAX_10_EXP__ 308 #define __LDBL_DENORM_MIN__ 3.64519953188247460252840593361941982e-4951L #define __INT16_C(c) c #define __STDC__ 1 #define __FLT32X_DIG__ 15 #define __PTRDIFF_TYPE__ long int #define __ATOMIC_SEQ_CST 5 #define __FLT32X_MIN_10_EXP__ (-307) #define __UINTPTR_TYPE__ long unsigned int #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __LDBL_MIN_10_EXP__ (-4931) #define __cpp_generic_lambdas 201304L #define __SSE_MATH__ 1 #define __SIZEOF_LONG_LONG__ 8 #define __cpp_user_defined_literals 200809L #define __FLT128_DECIMAL_DIG__ 36 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __FLT32_HAS_QUIET_NAN__ 1 #define __FLT_DECIMAL_DIG__ 9 #define __UINT_FAST16_MAX__ 0xffffffffffffffffUL #define __LDBL_NORM_MAX__ 1.18973149535723176502126385303097021e+4932L #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __UINT_FAST8_TYPE__ unsigned char #define _GNU_SOURCE 1 #define __cpp_init_captures 201304L #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_RELEASE 3 child config.compilerFlags took 0.363713 seconds Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkC99Flag from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:1384) Check for -std=c99 or equivalent flag Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; float *restrict z = &y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*(*z); } (void)x; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 Accepted C99 compile flag: ============================================================================================= TESTING: checkCFormatting from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:359) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:370) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:162) Determines the libraries needed to link with C compiled code Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:1335) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -MMD -MP /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Trying Cxx compiler flag -MMD -MP Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC -MMD -MP /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -std=gnu++17 -fPIC -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler ============================================================================================= TESTING: checkCxxRestrict from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:121) Check for the CXX restrict keyword equivalent to C99 restrict Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x; (void)x; return 0; } compilers: Set Cxx restrict keyword to : __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:389) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { public: int i; }; somename b; b.i = 0; (void)b.i; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 ============================================================================================= TESTING: checkCxxComplexFix from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:416) Determine if the CXX compiler supports utilities provided by petsccxxcomplexfix.h Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define Type int #define PetscReal double #define PetscComplex std::complex /* The two lines, from petsccxxcomplexfix.h, can cause the combination "C++14 + GCC-4.x libstdc++ library" to fail, complaining imag() is not marked const. If the compiler can compile these two lines, it should be able to compile other lines. */ static inline PetscComplex operator-(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) - const_cast(rhs); } static inline PetscComplex operator/(const Type& lhs, const PetscComplex& rhs) { return PetscReal(lhs) / const_cast(rhs); } int main() { Type x = 2; PetscComplex y(1.0,1.0),z,w; z = x - y; w = x / y; std::cout << z << w; ; return 0; } the CXX compiler supports petsccxxcomplexfix.h Defined "HAVE_CXX_COMPLEX_FIX" to "1" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:445) Determines the libraries needed to link with C++ from C and Fortran Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `asub()': /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `__static_initialization_and_destruction_0(int, int)': /usr/include/c++/11/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: /usr/include/c++/11/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/include/c++/11/ext/new_allocator.h:145: undefined reference to `operator delete(void*, unsigned long)' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o:(.data.rel.local.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `asub()': /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `__static_initialization_and_destruction_0(int, int)': /usr/include/c++/11/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: /usr/include/c++/11/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/include/c++/11/ext/new_allocator.h:145: undefined reference to `operator delete(void*, unsigned long)' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o:(.data.rel.local.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `asub()': /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `std::cout' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `__static_initialization_and_destruction_0(int, int)': /usr/include/c++/11/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/bin/ld: /usr/include/c++/11/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/include/c++/11/ext/new_allocator.h:145: undefined reference to `operator delete(void*, unsigned long)' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o:(.data.rel.local.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status: Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --version stdout: gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -V ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:787) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main call d1chk() end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran8plus compiler Defined "FORTRAN_CHARLEN_T" to "size_t" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:825) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main call d1_chk() end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.o: in function `MAIN__': /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.o: in function `MAIN__': /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.o: in function `MAIN__': /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkFortranLibraries from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:835) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2:11: 2 | use mpi | 1 Fatal Error: Cannot open module file ���mpi.mod��� for reading at (1): No such file or directory compilation terminated. Source: program main use mpi call MPI_Allreduce() end Compile failed inside link Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:3:2: 3 | call MPI_Allreduce() | 1 ~~~ Fatal Error: mpif.h: No such file or directory compilation terminated. Source: program main #include call MPI_Allreduce() end Compile failed inside link Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -V Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: subroutine asub() print*,'testing' return end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `asub_': /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `asub_': /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/confc.o: in function `asub_': /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_transfer_character_write' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.compilers/conftest.F90:2: undefined reference to `_gfortran_st_write_done' collect2: error: ld returned 1 exit status: Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o -lstdc++ -ldl stdout: mpif90 for the Intel(R) MPI Library 2021.8 for Linux* Copyright Intel Corporation. Possible ERROR while running linker:exit code 0 stdout: mpif90 for the Intel(R) MPI Library 2021.8 for Linux* Copyright Intel Corporation.stderr: Driving: gfortran -fallow-argument-mismatch -o /tmp/petsc-j92ofwaf/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o -lstdc++ -ldl -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release -LI_MPI_SUBSTITUTE_INSTALLDIR/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.3.0-1ubuntu1~22.04' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-gcn/usr --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.3.0 (Ubuntu 11.3.0-1ubuntu1~22.04) Reading specs from /usr/lib/gcc/x86_64-linux-gnu/11/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/conftest.' /usr/lib/gcc/x86_64-linux-gnu/11/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/11/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper -plugin-opt=-fresolution=/tmp/ccRbPpYu.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o /tmp/petsc-j92ofwaf/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release -LI_MPI_SUBSTITUTE_INSTALLDIR/lib -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. /tmp/petsc-j92ofwaf/config.compilers/conftest.o -lstdc++ -ldl --enable-new-dtags -rpath I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -rpath I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -z now -z relro -z noexecstack --enable-new-dtags -ldl -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/conftest.' Linker output before filtering: mpif90 for the Intel(R) MPI Library 2021.8 for Linux* Copyright Intel Corporation. Driving: gfortran -fallow-argument-mismatch -o /tmp/petsc-j92ofwaf/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o -lstdc++ -ldl -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release -LI_MPI_SUBSTITUTE_INSTALLDIR/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.3.0-1ubuntu1~22.04' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-gcn/usr --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.3.0 (Ubuntu 11.3.0-1ubuntu1~22.04) Reading specs from /usr/lib/gcc/x86_64-linux-gnu/11/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/conftest.' /usr/lib/gcc/x86_64-linux-gnu/11/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/11/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper -plugin-opt=-fresolution=/tmp/ccRbPpYu.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o /tmp/petsc-j92ofwaf/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release -LI_MPI_SUBSTITUTE_INSTALLDIR/lib -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. /tmp/petsc-j92ofwaf/config.compilers/conftest.o -lstdc++ -ldl --enable-new-dtags -rpath I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -rpath I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -z now -z relro -z noexecstack --enable-new-dtags -ldl -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/conftest.' : Linker output after filtering: mpif90 for the Intel(R) MPI Library 2021.8 for Linux* Copyright Intel Corporation. Driving: gfortran -fallow-argument-mismatch -o /tmp/petsc-j92ofwaf/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o -lstdc++ -ldl -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release -LI_MPI_SUBSTITUTE_INSTALLDIR/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 11.3.0-1ubuntu1~22.04' --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-11 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-gcn/usr --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 11.3.0 (Ubuntu 11.3.0-1ubuntu1~22.04) Reading specs from /usr/lib/gcc/x86_64-linux-gnu/11/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/conftest.' /usr/lib/gcc/x86_64-linux-gnu/11/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/11/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper -plugin-opt=-fresolution=/tmp/ccRbPpYu.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o /tmp/petsc-j92ofwaf/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release -LI_MPI_SUBSTITUTE_INSTALLDIR/lib -L/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. /tmp/petsc-j92ofwaf/config.compilers/conftest.o -lstdc++ -ldl --enable-new-dtags -rpath I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -rpath I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -z now -z relro -z noexecstack --enable-new-dtags -ldl -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-fallow-argument-mismatch' '-o' '/tmp/petsc-j92ofwaf/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-none' '-ffree-line-length-0' '-Wno-lto-type-mismatch' '-Wno-unused-dummy-argument' '-g' '-O0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0' '-I' 'I_MPI_SUBSTITUTE_INSTALLDIR/include' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release' '-LI_MPI_SUBSTITUTE_INSTALLDIR/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' '/tmp/petsc-j92ofwaf/config.compilers/conftest.': compilers: Checking arg mpif90 compilers: Unknown arg mpif90 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg Intel(R) compilers: Unknown arg Intel(R) compilers: Checking arg MPI compilers: Unknown arg MPI compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg 2021.8 compilers: Unknown arg 2021.8 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg Linux* compilers: Unknown arg Linux* compilers: Checking arg Copyright compilers: Unknown arg Copyright compilers: Checking arg Intel compilers: Unknown arg Intel compilers: Checking arg Corporation. compilers: Unknown arg Corporation. compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -fallow-argument-mismatch compilers: Unknown arg -fallow-argument-mismatch compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-j92ofwaf/config.compilers/conftest compilers: Unknown arg /tmp/petsc-j92ofwaf/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-none compilers: Unknown arg -ffree-line-length-none compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-lto-type-mismatch compilers: Unknown arg -Wno-lto-type-mismatch compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -O0 compilers: Unknown arg -O0 compilers: Checking arg /tmp/petsc-j92ofwaf/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-j92ofwaf/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 compilers: Found include directory: I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 compilers: Checking arg -II_MPI_SUBSTITUTE_INSTALLDIR/include compilers: Found include directory: I_MPI_SUBSTITUTE_INSTALLDIR/include compilers: Checking arg -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release compilers: Found library directory: -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release compilers: Checking arg -LI_MPI_SUBSTITUTE_INSTALLDIR/lib compilers: Found library directory: -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath compilers: Checking arg I_MPI_SUBSTITUTE_INSTALLDIR/lib/release compilers: Unknown arg I_MPI_SUBSTITUTE_INSTALLDIR/lib/release compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath compilers: Checking arg I_MPI_SUBSTITUTE_INSTALLDIR/lib compilers: Unknown arg I_MPI_SUBSTITUTE_INSTALLDIR/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -lrt compilers: Found library: -lrt compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -Wl,-z,now compilers: Unknown arg -Wl,-z,now compilers: Checking arg -Wl,-z,relro compilers: Unknown arg -Wl,-z,relro compilers: Checking arg -Wl,-z,noexecstack compilers: Unknown arg -Wl,-z,noexecstack compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper compilers: Checking arg OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa compilers: Unknown arg OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa compilers: Checking arg OFFLOAD_TARGET_DEFAULT=1 compilers: Unknown arg OFFLOAD_TARGET_DEFAULT=1 compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-11/README.Bugs compilers: Checking arg --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 compilers: Unknown arg --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --with-gcc-major-version-only compilers: Unknown arg --with-gcc-major-version-only compilers: Checking arg --program-suffix=-11 compilers: Unknown arg --program-suffix=-11 compilers: Checking arg --program-prefix=x86_64-linux-gnu- compilers: Unknown arg --program-prefix=x86_64-linux-gnu- compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --enable-bootstrap compilers: Unknown arg --enable-bootstrap compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --with-default-libstdcxx-abi=new compilers: Unknown arg --with-default-libstdcxx-abi=new compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-vtable-verify compilers: Unknown arg --disable-vtable-verify compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-default-pie compilers: Unknown arg --enable-default-pie compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-libphobos-checking=release compilers: Unknown arg --enable-libphobos-checking=release compilers: Checking arg --with-target-system-zlib=auto compilers: Unknown arg --with-target-system-zlib=auto compilers: Checking arg --enable-objc-gc=auto compilers: Unknown arg --enable-objc-gc=auto compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --enable-cet compilers: Unknown arg --enable-cet compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-offload-targets=nvptx-none=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-gcn/usr compilers: Unknown arg --enable-offload-targets=nvptx-none=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-xKiWfi/gcc-11-11.3.0/debian/tmp-gcn/usr compilers: Checking arg --without-cuda-driver compilers: Unknown arg --without-cuda-driver compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg --with-build-config=bootstrap-lto-lean compilers: Unknown arg --with-build-config=bootstrap-lto-lean compilers: Checking arg --enable-link-serialization=2 compilers: Unknown arg --enable-link-serialization=2 compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg Supported compilers: Unknown arg Supported compilers: Checking arg LTO compilers: Unknown arg LTO compilers: Checking arg compression compilers: Unknown arg compression compilers: Checking arg algorithms: compilers: Unknown arg algorithms: compilers: Checking arg zlib compilers: Unknown arg zlib compilers: Checking arg zstd compilers: Unknown arg zstd compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 11.3.0 compilers: Unknown arg 11.3.0 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 11.3.0-1ubuntu1~22.04) compilers: Unknown arg 11.3.0-1ubuntu1~22.04) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/11/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/11/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/11/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/11/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/11/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/11/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/11/liblto_plugin.so compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/11/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/11/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/ccRbPpYu.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/ccRbPpYu.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lquadmath compilers: Unknown arg -plugin-opt=-pass-through=-lquadmath compilers: Checking arg -plugin-opt=-pass-through=-lm compilers: Unknown arg -plugin-opt=-pass-through=-lm compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -pie compilers: Unknown arg -pie compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg now compilers: Unknown arg now compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-j92ofwaf/config.compilers/conftest compilers: Unknown arg /tmp/petsc-j92ofwaf/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/Scrt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/11/crtbeginS.o compilers: Checking arg -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release compilers: Already in lflags so skipping: -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release compilers: Checking arg -LI_MPI_SUBSTITUTE_INSTALLDIR/lib compilers: Already in lflags so skipping: -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/11 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/11 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/11/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/11/../../.. compilers: Checking arg /tmp/petsc-j92ofwaf/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-j92ofwaf/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -rpath compilers: Found -rpath library: /home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release compilers: Checking arg -rpath compilers: Found -rpath library: /home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg now compilers: Unknown arg now compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg noexecstack compilers: Unknown arg noexecstack compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/11/crtendS.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/crtn.o compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with Fortran as the linker Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-j92ofwaf/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C as the linker Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-j92ofwaf/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-j92ofwaf/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.setCompilers/conftest compilers: Fortran libraries can be used from C++ ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:1300) Check that Fortran can link C++ libraries Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main call d1chk() end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/cxxobj.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilers.py:1452) Sets the selected compilers into the framework child config.compilers took 1.404160 seconds ============================================================================================= TESTING: checkFortranTypeSizes from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:2:21: 2 | real*8 variable | 1 Warning: Unused variable ���variable��� declared at (1) [-Wunused-variable] Source: program main real*8 variable end ============================================================================================= TESTING: checkFortranPreprocessor from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main #define dummy dummy #ifndef dummy fooey #endif end Output from compiling with -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] compilers: Fortran uses preprocessor ============================================================================================= TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.setCompilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -DTesting /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main #define dummy dummy #ifndef Testing fooey #endif end Output from compiling with -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -DTesting f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ============================================================================================= TESTING: checkFortran90 from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:147) Determine whether the Fortran compiler handles F90 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:3:43: 3 | REAL(KIND=SELECTED_REAL_KIND(10)) d | 1 Warning: Unused variable ���d��� declared at (1) [-Wunused-variable] Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -lstdc++ -ldl Fortran compiler supports F90 ============================================================================================= TESTING: checkFortran90FreeForm from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:174) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ============================================================================================= TESTING: checkFortran2003 from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:188) Determine whether the Fortran compiler handles F2003 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:21:55: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | ^ Warning: ���carray.data��� may be used uninitialized [-Wmaybe-uninitialized] /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:16:48: 16 | Type(C_Ptr),Dimension(:),Pointer :: CArray | ^ note: ���carray��� declared here /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:21:55: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | ^ Warning: ���carray.offset��� may be used uninitialized [-Wmaybe-uninitialized] /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:16:48: 16 | Type(C_Ptr),Dimension(:),Pointer :: CArray | ^ note: ���carray��� declared here /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:21:55: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | ^ Warning: ���carray.dim[0].lbound��� may be used uninitialized [-Wmaybe-uninitialized] /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:16:48: 16 | Type(C_Ptr),Dimension(:),Pointer :: CArray | ^ note: ���carray��� declared here /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:21:55: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | ^ Warning: ���carray.dim[0].ubound��� may be used uninitialized [-Wmaybe-uninitialized] /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:16:48: 16 | Type(C_Ptr),Dimension(:),Pointer :: CArray | ^ note: ���carray��� declared here /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:21:55: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | ^ Warning: ���carray.dim[0].stride��� may be used uninitialized [-Wmaybe-uninitialized] /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90:16:48: 16 | Type(C_Ptr),Dimension(:),Pointer :: CArray | ^ note: ���carray��� declared here Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ============================================================================================= TESTING: checkFortran90Array from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:223) Check for F90 array interfaces Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o /tmp/petsc-j92ofwaf/config.compilersFortran/fooobj.o -lstdc++ -ldl Testing executable /tmp/petsc-j92ofwaf/config.compilersFortran/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.compilersFortran/conftest stdout: arrays [0x7fff593e7d10 0x7fff593e7d10 0x7fff593e7d10] arrays [0x7fff593e7cb0 0x7fff593e7c50 0x7fff593e7cb0] pointers do not match! [0xc 0x7fff593e7d10] [0x7fff593e7d10] ERROR while running executable: Could not execute "['/tmp/petsc-j92ofwaf/config.compilersFortran/conftest']": arrays [0x7fff593e7d10 0x7fff593e7d10 0x7fff593e7d10] arrays [0x7fff593e7cb0 0x7fff593e7c50 0x7fff593e7cb0] pointers do not match! [0xc 0x7fff593e7d10] [0x7fff593e7d10] compilers: F90 uses a single argument for array pointers ============================================================================================= TESTING: checkFortran90AssumedType from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:310) Check if Fortran compiler array pointer is a raw pointer in C Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -qversion ============================================================================================= TESTING: checkFortranModuleInclude from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:316) Figures out what flag is used to specify the include path for Fortran modules Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: module configtest integer testint parameter (testint = 42) end module configtest Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main use configtest write(*,*) testint end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest -I/tmp/petsc-j92ofwaf/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o /tmp/petsc-j92ofwaf/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ============================================================================================= TESTING: checkFortranModuleOutput from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:382) Figures out what flag is used to specify the output path for Fortran modules Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -module /tmp/petsc-j92ofwaf/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command-line option ���-module���; did you mean ���-Mmodules���? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -module:/tmp/petsc-j92ofwaf/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command-line option ���-module:/tmp/petsc-j92ofwaf/config.compilersFortran/confdir��� Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fmod=/tmp/petsc-j92ofwaf/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] f951: Warning: command-line option ���-fmod=/tmp/petsc-j92ofwaf/config.compilersFortran/confdir��� is valid for Modula-2 but not for Fortran Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= failed Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -J/tmp/petsc-j92ofwaf/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ============================================================================================= TESTING: checkFortranTypeStar from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:136) Determine whether the Fortran compiler handles type(*) Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ============================================================================================= TESTING: checkFortranTypeInitialize from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:126) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ============================================================================================= TESTING: configureFortranFlush from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:116) Determine if Fortran has a flush() command Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main call flush(6) end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:427) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -MMD -MP /tmp/petsc-j92ofwaf/config.setCompilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main end Output from compiling with -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -MMD -MP f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Defined make macro "FC_DEPFLAGS" to "-MMD -MP" ============================================================================================= TESTING: checkFortran90LineLength from config.compilersFortran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/compilersFortran.py:163) Determine whether the Fortran compiler has infinite line length Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr,ierr2; ierr = 1; ierr2 = 2 end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FREE_LINE_LENGTH_NONE" to "1" Fortran compiler has unlimited line length child config.compilersFortran took 0.395825 seconds ============================================================================================= TESTING: checkStdC from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:107) Determine if C standard headers support everything PETSc needs Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.headers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.headers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-j92ofwaf/config.headers/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:141) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:176) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.headers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:198) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:204) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.headers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; (void)pi; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory 3 | #include | ^~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory 3 | #include | ^~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory 3 | #include | ^~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory 3 | #include | ^~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory 3 | #include | ^~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory 3 | #include | ^~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory 3 | #include | ^~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory 3 | #include | ^~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: dos.h: No such file or directory 3 | #include | ^~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory 3 | #include | ^~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory 3 | #include | ^~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: io.h: No such file or directory 3 | #include | ^~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: machine/endian.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sys/systeminfo.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: direct.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: Ws2tcpip.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: WindowsX.h: No such file or directory 3 | #include | ^~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: ieeefp.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: zmmintrin.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:219) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.headers/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers took 0.593870 seconds ============================================================================================= TESTING: configureL1CacheLineSize from config.utilities.cacheDetails(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/cacheDetails.py:127) Try to determine the size (in bytes) of an L1 cacheline. On success defines the variable PETSC_LEVEL1_DCACHE_LINESIZE to the determined value. Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_level1_dcache_linesize() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return val >= 0 ? val : 32; } int main() { getconf_level1_dcache_linesize();; return 0; } ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_level1_dcache_linesize() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return val >= 0 ? val : 32; } int main() { FILE *output = fopen("conftestval", "w"); if (!output) return 1; fprintf(output, "%ld", (long)getconf_level1_dcache_linesize()); fclose(output);; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "64" child config.utilities.cacheDetails took 0.048955 seconds ============================================================================================= TESTING: check_struct_sigaction from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a; (void)a; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.types/conftest.c: In function ���main���: /tmp/petsc-j92ofwaf/config.types/conftest.c:11:1: error: unknown type name ���__int64���; did you mean ���__int64_t���? 11 | __int64 a; | ^~~~~~~ | __int64_t Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a; (void)a; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a; (void)a; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a; (void)a; return 0; } mode_t found Checking for type: off_t Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a; (void)a; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a; (void)a; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a; (void)a; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.types /tmp/petsc-j92ofwaf/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; (void)x; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; (void)x; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.o -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { double _Complex x; x = I; (void)x; return 0; } Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:95) Check for complex numbers in namespace std Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; (void)x; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkSizeof from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:106) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:106) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:106) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:106) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:106) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:106) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:106) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:140) Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/types.py:162) Sets PETSC_MAX_PATH_LEN depending on values available on the system Determining PETSC_MAX_PATH_LEN Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.types /tmp/petsc-j92ofwaf/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types took 0.499650 seconds ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/memAlign.py:28) Choose memory alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign took 0.000292 seconds ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe: No such file or directory collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lfpe: No such file or directory collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lfpe: No such file or directory collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket: No such file or directory collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lsocket: No such file or directory collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lsocket: No such file or directory collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe: No such file or directory collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lfpe: No such file or directory collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lfpe: No such file or directory collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket: No such file or directory collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lsocket: No such file or directory collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lsocket: No such file or directory collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkMath from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:297) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; int s = scanf("%lf",&x); y = sin(x); printf("%f %d",y,s); ; } #include double floor(double); static void _check_floor() { double x,y; int s = scanf("%lf",&x); y = floor(x); printf("%f %d",y,s); ; } #include double log10(double); static void _check_log10() { double x,y; int s = scanf("%lf",&x); y = log10(x); printf("%f %d",y,s); ; } #include double pow(double, double); static void _check_pow() { double x,y; int s = scanf("%lf",&x); y = pow(x,x); printf("%f %d",y,s); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_sin': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:6: undefined reference to `sin' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_floor': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:10: undefined reference to `floor' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_log10': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:14: undefined reference to `log10' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_pow': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:18: undefined reference to `pow' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_sin': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:6: undefined reference to `sin' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_floor': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:10: undefined reference to `floor' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_log10': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:14: undefined reference to `log10' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_pow': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:18: undefined reference to `pow' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_sin': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:6: undefined reference to `sin' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_floor': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:10: undefined reference to `floor' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_log10': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:14: undefined reference to `log10' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_pow': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:18: undefined reference to `pow' collect2: error: ld returned 1 exit status: Checking for functions [sin floor log10 pow] in library ['m'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; int s = scanf("%lf",&x); y = sin(x); printf("%f %d",y,s); ; } #include double floor(double); static void _check_floor() { double x,y; int s = scanf("%lf",&x); y = floor(x); printf("%f %d",y,s); ; } #include double log10(double); static void _check_log10() { double x,y; int s = scanf("%lf",&x); y = log10(x); printf("%f %d",y,s); ; } #include double pow(double, double); static void _check_pow() { double x,y; int s = scanf("%lf",&x); y = pow(x,x); printf("%f %d",y,s); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lm -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; int s = scanf("%lf",&x); y = sin(x); printf("%f %d",y,s); ; } #include double floor(double); static void _check_floor() { double x,y; int s = scanf("%lf",&x); y = floor(x); printf("%f %d",y,s); ; } #include double log10(double); static void _check_log10() { double x,y; int s = scanf("%lf",&x); y = log10(x); printf("%f %d",y,s); ; } #include double pow(double, double); static void _check_pow() { double x,y; int s = scanf("%lf",&x); y = pow(x,x); printf("%f %d",y,s); ; } void dummy(void) {_check_sin(); _check_floor(); _check_log10(); _check_pow();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ============================================================================================= TESTING: checkMathErf from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:318) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); (void)y; } int main() { _check_erf();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lm -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); (void)y; } void dummy(void) {_check_erf();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:327) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); (void)y; } int main() { _check_tgamma();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lm -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); (void)y; } void dummy(void) {_check_tgamma();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:336) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library ['libm.a'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lm -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } void dummy(void) {_check_lgamma();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:349) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lm -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } void dummy(void) {_check_fesetenv();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:357) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); (void)y; } int main() { _check_log2();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lm -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); (void)y; } void dummy(void) {_check_log2();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:366) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } void dummy(void) {_check_clock_gettime();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lstdc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:382) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -ldl -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } void dummy(void) {_check_dlopen();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.types /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" ============================================================================================= TESTING: checkExecutableExportFlag from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:608) Checks for the flag that allows executables to export symbols to dlsym() ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif #define PETSC_DLLEXPORT __attribute__((visibility ("default"))) extern PETSC_DLLEXPORT int foo() { return 42; } int main() { void *lib; int (*foo)(); lib = dlopen(NULL, RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open executable: %s\n", dlerror()); exit(1); } foo = (int (*)(void)) dlsym(lib, "foo"); if (!foo) { fprintf(stderr, "Could not find function in executable\n"); exit(1); } if ((*foo)() != 42) { fprintf(stderr, "Could not run function\n"); exit(1); } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lstdc++ -ldl -ldl Testing executable /tmp/petsc-j92ofwaf/config.libraries/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.libraries/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.libraries/conftest ERROR while running executable: Could not execute "['/tmp/petsc-j92ofwaf/config.libraries/conftest']": Could not find function in executable Executable does not export symbols for dlopen() ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-export_dynamic /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif #define PETSC_DLLEXPORT __attribute__((visibility ("default"))) extern PETSC_DLLEXPORT int foo() { return 42; } int main() { void *lib; int (*foo)(); lib = dlopen(NULL, RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open executable: %s\n", dlerror()); exit(1); } foo = (int (*)(void)) dlsym(lib, "foo"); if (!foo) { fprintf(stderr, "Could not find function in executable\n"); exit(1); } if ((*foo)() != 42) { fprintf(stderr, "Could not run function\n"); exit(1); } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-export_dynamic /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lstdc++ -ldl -ldl Possible ERROR while running linker:exit code 0 stderr: /usr/bin/ld: warning: cannot find entry symbol xport_dynamic; defaulting to 0000000000001100 Linker output before filtering: /usr/bin/ld: warning: cannot find entry symbol xport_dynamic; defaulting to 0000000000001100 : Linker output after filtering: /usr/bin/ld: warning: cannot find entry symbol xport_dynamic; defaulting to 0000000000001100: Executable does not export symbols for dlopen() ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -export-dynamic /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif #define PETSC_DLLEXPORT __attribute__((visibility ("default"))) extern PETSC_DLLEXPORT int foo() { return 42; } int main() { void *lib; int (*foo)(); lib = dlopen(NULL, RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open executable: %s\n", dlerror()); exit(1); } foo = (int (*)(void)) dlsym(lib, "foo"); if (!foo) { fprintf(stderr, "Could not find function in executable\n"); exit(1); } if ((*foo)() != 42) { fprintf(stderr, "Could not run function\n"); exit(1); } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -export-dynamic /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lstdc++ -ldl -ldl Testing executable /tmp/petsc-j92ofwaf/config.libraries/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.libraries/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.libraries/conftest Executable exports symbols for dlopen() Defined "HAVE_EXECUTABLE_EXPORT" to "1" Defined make macro "EXEFLAGS" to "-export-dynamic" child config.libraries took 0.977520 seconds ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_DMLANDAU_2D, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_DMLANDAU_2D" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_bgl_perfctr_void': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status: Checking for functions [ADIOI_BGL_Open] in library [''] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_ADIOI_BGL_Open': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status: *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "USE_AVX512_KERNELS" to "1" ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/libraryOptions.py:98) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions took 0.058588 seconds child config.atomics took 0.000001 seconds ============================================================================================= TESTING: checkSysinfo from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" 9 | # error "Cannot check sysinfo without special headers" | ^~~~~ /tmp/petsc-j92ofwaf/config.functions/conftest.c: In function ���main���: /tmp/petsc-j92ofwaf/config.functions/conftest.c:13:30: warning: implicit declaration of function ���sysinfo��� [-Wimplicit-function-declaration] 13 | char buf[10]; long count=10; sysinfo(1, buf, count); | ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp = { 0 }; vprintf( "%d", Argp ); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp = { 0 }; vfprintf(stdout, "%d", Argp ); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp = { 0 };char str[6]; vsnprintf(str,5, "%d", Argp ); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.functions/conftest.c: In function ���main���: /tmp/petsc-j92ofwaf/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be 6 | int ierr; void *p; ierr = free(p); return ierr; | ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return ierr; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [_set_output_format dlclose lseek getwd uname getcwd sleep strcasecmp _mkdir _access rand _lseek socket PXFGETARG snprintf getpagesize fpsetsticky _snprintf stricmp gethostbyname _pipe __gcov_dump dlsym fpresetsticky dlopen gethostname fork posix_memalign popen dlerror access getdomainname realpath readlink bzero sbreak fstatat _sleep usleep clock _getcwd getrusage time drand48] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Possible ERROR while running compiler:exit code 0 stderr: /tmp/petsc-j92ofwaf/config.functions/conftest.c:20:6: warning: conflicting types for built-in function ���strcasecmp���; expected ���int(const char *, const char *)��� [-Wbuiltin-declaration-mismatch] 20 | char strcasecmp(); | ^~~~~~~~~~ /tmp/petsc-j92ofwaf/config.functions/conftest.c:27:6: warning: conflicting types for built-in function ���snprintf���; expected ���int(char *, long unsigned int, const char *, ...)��� [-Wbuiltin-declaration-mismatch] 27 | char snprintf(); | ^~~~~~~~ /tmp/petsc-j92ofwaf/config.functions/conftest.c:6:1: note: ���snprintf��� is declared in header ������ 5 | #include +++ |+#include 6 | /* Override any gcc2 internal prototype to avoid an error. */ /tmp/petsc-j92ofwaf/config.functions/conftest.c:39:6: warning: conflicting types for built-in function ���fork���; expected ���int(void)��� [-Wbuiltin-declaration-mismatch] 39 | char fork(); | ^~~~ /tmp/petsc-j92ofwaf/config.functions/conftest.c:40:6: warning: conflicting types for built-in function ���posix_memalign���; expected ���int(void **, long unsigned int, long unsigned int)��� [-Wbuiltin-declaration-mismatch] 40 | char posix_memalign(); | ^~~~~~~~~~~~~~ /tmp/petsc-j92ofwaf/config.functions/conftest.c:47:6: warning: conflicting types for built-in function ���bzero���; expected ���void(void *, long unsigned int)��� [-Wbuiltin-declaration-mismatch] 47 | char bzero(); | ^~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); char dlclose(); char lseek(); char getwd(); char uname(); char getcwd(); char sleep(); char strcasecmp(); char _mkdir(); char _access(); char rand(); char _lseek(); char socket(); char PXFGETARG(); char snprintf(); char getpagesize(); char fpsetsticky(); char _snprintf(); char stricmp(); char gethostbyname(); char _pipe(); char __gcov_dump(); char dlsym(); char fpresetsticky(); char dlopen(); char gethostname(); char fork(); char posix_memalign(); char popen(); char dlerror(); char access(); char getdomainname(); char realpath(); char readlink(); char bzero(); char sbreak(); char fstatat(); char _sleep(); char usleep(); char clock(); char _getcwd(); char getrusage(); char time(); char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub___gcov_dump) || defined (__stub_____gcov_dump) __gcov_dump_will_always_fail_with_ENOSYS(); #else __gcov_dump(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_posix_memalign) || defined (__stub___posix_memalign) posix_memalign_will_always_fail_with_ENOSYS(); #else posix_memalign(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_fstatat) || defined (__stub___fstatat) fstatat_will_always_fail_with_ENOSYS(); #else fstatat(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:85: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:67: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:115: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:121: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:133: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:145: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:163: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:169: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:175: undefined reference to `stricmp' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:187: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:193: undefined reference to `__gcov_dump' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:205: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:277: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:289: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:307: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:85: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:67: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:115: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:121: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:133: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:145: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:163: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:169: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:175: undefined reference to `stricmp' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:187: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:193: undefined reference to `__gcov_dump' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:205: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:277: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:289: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:307: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:85: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:67: undefined reference to `_set_output_format' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:115: undefined reference to `_mkdir' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:121: undefined reference to `_access' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:133: undefined reference to `_lseek' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:145: undefined reference to `PXFGETARG' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:163: undefined reference to `fpsetsticky' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:169: undefined reference to `_snprintf' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:175: undefined reference to `stricmp' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:187: undefined reference to `_pipe' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:193: undefined reference to `__gcov_dump' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:205: undefined reference to `fpresetsticky' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:277: undefined reference to `sbreak' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:289: undefined reference to `_sleep' /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.c:307: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status: Checking for functions [dlclose uname strcasecmp rand socket getpagesize gethostbyname dlsym dlopen gethostname fork posix_memalign] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Possible ERROR while running compiler:exit code 0 stderr: /tmp/petsc-j92ofwaf/config.functions/conftest.c:15:6: warning: conflicting types for built-in function ���strcasecmp���; expected ���int(const char *, const char *)��� [-Wbuiltin-declaration-mismatch] 15 | char strcasecmp(); | ^~~~~~~~~~ /tmp/petsc-j92ofwaf/config.functions/conftest.c:23:6: warning: conflicting types for built-in function ���fork���; expected ���int(void)��� [-Wbuiltin-declaration-mismatch] 23 | char fork(); | ^~~~ /tmp/petsc-j92ofwaf/config.functions/conftest.c:24:6: warning: conflicting types for built-in function ���posix_memalign���; expected ���int(void **, long unsigned int, long unsigned int)��� [-Wbuiltin-declaration-mismatch] 24 | char posix_memalign(); | ^~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); char uname(); char strcasecmp(); char rand(); char socket(); char getpagesize(); char gethostbyname(); char dlsym(); char dlopen(); char gethostname(); char fork(); char posix_memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_posix_memalign) || defined (__stub___posix_memalign) posix_memalign_will_always_fail_with_ENOSYS(); #else posix_memalign(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_POSIX_MEMALIGN" to "1" Checking for functions [popen dlerror getdomainname realpath readlink bzero fstatat usleep clock getrusage time drand48] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Possible ERROR while running compiler:exit code 0 stderr: /tmp/petsc-j92ofwaf/config.functions/conftest.c:18:6: warning: conflicting types for built-in function ���bzero���; expected ���void(void *, long unsigned int)��� [-Wbuiltin-declaration-mismatch] 18 | char bzero(); | ^~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); char dlerror(); char getdomainname(); char realpath(); char readlink(); char bzero(); char fstatat(); char usleep(); char clock(); char getrusage(); char time(); char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_fstatat) || defined (__stub___fstatat) fstatat_will_always_fail_with_ENOSYS(); #else fstatat(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_POPEN" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_FSTATAT" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_DRAND48" to "1" Checking for functions [_set_output_format] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status: Checking for functions [lseek] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [getwd] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker:exit code 0 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used.: Checking for functions [getcwd] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [sleep] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_mkdir] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_mkdir' collect2: error: ld returned 1 exit status: Checking for functions [_access] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_access' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_access' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_access' collect2: error: ld returned 1 exit status: Checking for functions [_lseek] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_lseek' collect2: error: ld returned 1 exit status: Checking for functions [PXFGETARG] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status: Checking for functions [snprintf] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Possible ERROR while running compiler:exit code 0 stderr: /tmp/petsc-j92ofwaf/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ���snprintf���; expected ���int(char *, long unsigned int, const char *, ...)��� [-Wbuiltin-declaration-mismatch] 13 | char snprintf(); | ^~~~~~~~ /tmp/petsc-j92ofwaf/config.functions/conftest.c:6:1: note: ���snprintf��� is declared in header ������ 5 | #include +++ |+#include 6 | /* Override any gcc2 internal prototype to avoid an error. */ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [fpsetsticky] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `fpsetsticky' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `fpsetsticky' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `fpsetsticky' collect2: error: ld returned 1 exit status: Checking for functions [_snprintf] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status: Checking for functions [stricmp] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `stricmp' collect2: error: ld returned 1 exit status: Checking for functions [_pipe] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_pipe' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_pipe' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_pipe' collect2: error: ld returned 1 exit status: Checking for functions [__gcov_dump] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char __gcov_dump(); #ifdef __cplusplus } #endif int main() { #if defined (__stub___gcov_dump) || defined (__stub_____gcov_dump) __gcov_dump_will_always_fail_with_ENOSYS(); #else __gcov_dump(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `__gcov_dump' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `__gcov_dump' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `__gcov_dump' collect2: error: ld returned 1 exit status: Checking for functions [fpresetsticky] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `fpresetsticky' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `fpresetsticky' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `fpresetsticky' collect2: error: ld returned 1 exit status: Checking for functions [access] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [sbreak] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `sbreak' collect2: error: ld returned 1 exit status: Checking for functions [_sleep] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_sleep' collect2: error: ld returned 1 exit status: Checking for functions [_getcwd] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.functions/conftest.o: in function `main': /tmp/petsc-j92ofwaf/config.functions/conftest.c:24: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkMmap from config.functions(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.functions/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions took 0.998355 seconds ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize took 0.000212 seconds ============================================================================================= TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine took 0.037368 seconds ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/FPTrap.py:26) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.types /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: sigfpe.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.types /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory 3 | #include | ^~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory 3 | #include | ^~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: fpxcp.h: No such file or directory 3 | #include | ^~~~~~~~~ compilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.types /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: floatingpoint.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~~~~ compilation terminated.: child config.utilities.FPTrap took 0.020065 seconds ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: sysctl.h: No such file or directory 4 | #include | ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler:exit code 0 stderr: In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:26, from /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.c:4: /usr/include/features.h:194:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 194 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset); return 0; } Defined "_GNU_SOURCE" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(*(void **)&exit, &info) == 0) return 1; ; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros took 0.066794 seconds ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/missing.py:54) Checks if u_short is undefined Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; (void)foo; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/missing.py:60) Checks for SOCKETS and getline Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *lineptr; size_t n; FILE *stream; int main() { getline(&lineptr, &n, stream); ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/missing.py:80) Check for missing signals, and define MISSING_ if necessary Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; (void)i; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; (void)i; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/missing.py:97) Check for missing function prototype for getdomainname() Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -lstdc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/utilities/missing.py:123) Checks for missing random number generator prototypes Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing took 0.457916 seconds ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/sharedLibraries.py:33) if user specified out-dated 'with-shared' or 'with-dynamic' - flag an error ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/sharedLibraries.py:48) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(SL_LINKER_SUFFIX).$(2)" Defined make macro "SL_LINKER_FUNCTION" to " -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -v stdout: mpigcc for the Intel(R) MPI Library 2021.8 for Linux* Copyright Intel Corporation. Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/sharedLibraries.py:107) Checks that dladdr() works Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(*(void **)&exit, &info) == 0) return 1; ; return 0; } Defined "HAVE_DLADDR" to "1" Checking for header: cxxabi.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.types /tmp/petsc-j92ofwaf/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.headers/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.headers/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: cxxabi.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: cxxabi.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.headers/conftest.c:3:10: fatal error: cxxabi.h: No such file or directory 3 | #include | ^~~~~~~~~~ compilation terminated.: child PETSc.options.sharedLibraries took 0.026628 seconds ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/scalarTypes.py:42) Choose between real and complex numbers Scalar type is real Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b);(void)a; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b);(void)a; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b);(void)a; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/options/scalarTypes.py:83) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f = 0.0; logq(f); } int main() { _check_logq();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f = 0.0; logq(f); } void dummy(void) {_check_logq();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" C compiler works with quadmath library Checking Fortran compiler works with quadmath library Checking for functions [ ] in library ['quadmath'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main real*16 s,w; w = 2.0; s = cos(w) end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Fortran compiler works with quadmath library Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Checking C++ compiler works with quadmath library Checking for functions [logq] in library ['quadmath'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC -Wno-error /tmp/petsc-j92ofwaf/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif #include static void _check_logq() { __float128 f = FLT128_EPSILON; logq(f); } #ifdef __cplusplus } #endif int main() { _check_logq();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl C++ compiler works with quadmath library Checking for functions [logq] in library ['quadmath'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f = 0.0; logq(f); } int main() { _check_logq();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f = 0.0; logq(f); } void dummy(void) {_check_logq();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Adding ['quadmath'] to LIBS Defined "HAVE_REAL___FLOAT128" to "1" Checking C compiler works with __fp16 Checking for functions [] in library [''] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:8: error: unknown type name ���__fp16��� 4 | static __fp16 ret___fp16(__fp16 f) { return f; } | ^~~~~~ /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:26: error: unknown type name ���__fp16��� 4 | static __fp16 ret___fp16(__fp16 f) { return f; } | ^~~~~~ /tmp/petsc-j92ofwaf/config.libraries/conftest.c: In function ���_check_���: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5:25: error: unknown type name ���__fp16��� 5 | static void _check_() { __fp16 f = 1.0, g; g = ret___fp16(f); (void)g; } | ^~~~~~ /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5:48: warning: implicit declaration of function ���ret___fp16��� [-Wimplicit-function-declaration] 5 | static void _check_() { __fp16 f = 1.0, g; g = ret___fp16(f); (void)g; } | ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ static __fp16 ret___fp16(__fp16 f) { return f; } static void _check_() { __fp16 f = 1.0, g; g = ret___fp16(f); (void)g; } int main() { _check_();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes took 0.375246 seconds ============================================================================================= TESTING: configureMkdir from config.programs(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/programs.py:43) Check for autoreconf Checking for program /usr/local/sbin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/sbin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /sbin/autoreconf...not found Checking for program /bin/autoreconf...not found Checking for program /snap/bin/autoreconf...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/autoreconf...not found Checking for program /usr/local/sbin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/sbin/libtoolize...not found Checking for program /usr/bin/libtoolize...not found Checking for program /sbin/libtoolize...not found Checking for program /bin/libtoolize...not found Checking for program /snap/bin/libtoolize...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/libtoolize...not found Checking for program /usr/local/sbin/glibtoolize...not found Checking for program /usr/local/bin/glibtoolize...not found Checking for program /usr/sbin/glibtoolize...not found Checking for program /usr/bin/glibtoolize...not found Checking for program /sbin/glibtoolize...not found Checking for program /bin/glibtoolize...not found Checking for program /snap/bin/glibtoolize...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/glibtoolize...not found ============================================================================================= TESTING: configurePrograms from config.programs(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/programs.py:73) Check for the programs needed to build and run PETSc Checking for program /usr/local/sbin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/sbin/bash...not found Checking for program /usr/bin/bash...found Defined make macro "SHELL" to "/usr/bin/bash" Checking for program /usr/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-j92ofwaf/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-j92ofwaf/config.programs/diff1" "/tmp/petsc-j92ofwaf/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/ps...not found Unable to find programs: ['ps'] in listing of the specific search path: ['/usr/ucb', '/usr/usb'] Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Defined make macro "PYTHON" to "/usr/bin/python3" Checking for program /usr/local/sbin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/sbin/m4...not found Checking for program /usr/bin/m4...not found Checking for program /sbin/m4...not found Checking for program /bin/m4...not found Checking for program /snap/bin/m4...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/m4...not found child config.programs took 0.004633 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.make(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 4.3 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2020 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /usr/local/sbin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/sbin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= TESTING: setupGNUMake from config.packages.make(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ============================================================================================= TESTING: configureMakeNP from config.packages.make(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 24 cores: using make_np = 18 Defined make macro "MAKE_NP" to "18" Defined make macro "MAKE_TEST_NP" to "12" Defined make macro "MAKE_LOAD" to "36.0" Defined make macro "NPMAX" to "24" child config.packages.make took 0.004198 seconds ============================================================================================= TESTING: locateBison from config.packages.bison(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/bison.py:30) Looking for default Bison executable Checking for program /usr/local/sbin/bison...not found Checking for program /usr/local/bin/bison...not found Checking for program /usr/sbin/bison...not found Checking for program /usr/bin/bison...not found Checking for program /sbin/bison...not found Checking for program /bin/bison...not found Checking for program /snap/bin/bison...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/bison...not found child config.packages.bison took 0.000185 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.sycl took 0.000132 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.hip(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.hip took 0.000119 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.X(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.X(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:901) Loop over declared dependencies of package and error if any are missing ============================================================================================= TESTING: configureLibrary from config.packages.X(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:927) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `XSetWMName' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `XSetWMName' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_XSetWMName': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `XSetWMName' collect2: error: ld returned 1 exit status: Checking for library in Compiler specific search X: ['libX11.a'] ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lX11 -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lX11: No such file or directory collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: cannot find -lX11: No such file or directory collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: cannot find -lX11: No such file or directory collect2: error: ld returned 1 exit status: X: SearchDir DirPath not found.. skipping: /opt/X11 X: SearchDir DirPath not found.. skipping: /Developer/SDKs/MacOSX10.5.sdk/usr/X11 X: SearchDir DirPath not found.. skipping: /Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6 X: SearchDir DirPath not found.. skipping: /usr/X11 X: SearchDir DirPath not found.. skipping: /usr/X11R6 X: SearchDir DirPath not found.. skipping: /usr/X11R5 X: SearchDir DirPath not found.. skipping: /usr/X11R4 X: SearchDir DirPath not found.. skipping: /usr/local/X11 X: SearchDir DirPath not found.. skipping: /usr/local/X11R6 X: SearchDir DirPath not found.. skipping: /usr/local/X11R5 X: SearchDir DirPath not found.. skipping: /usr/local/X11R4 X: SearchDir DirPath not found.. skipping: /usr/X386 X: SearchDir DirPath not found.. skipping: /usr/x386 X: SearchDir DirPath not found.. skipping: /usr/XFree86/X11 Checking for library in Package specific search directory X: ['/usr/local/lib/libX11.a'] Contents of /usr/local: ['include', 'lib', 'etc', 'share', 'src', 'sbin', 'man', 'bin', 'games'] Contents /usr/local/lib: ['python3.10', 'cmake'] ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/usr/local/lib/libX11.a'] [] Checking directory of requested libraries:/usr/local/lib for first library:libX11. Files in directory:['python3.10', 'cmake'] X: DirPath not found.. skipping: /usr/local/lib64 X: SearchDir DirPath not found.. skipping: /usr/local/x11r5 X: SearchDir DirPath not found.. skipping: /usr/lpp/Xamples X: SearchDir DirPath not found.. skipping: /usr/openwin X: SearchDir DirPath not found.. skipping: /usr/openwin/share ============================================================================================= TESTING: checkVersion from config.packages.X(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1069) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "xorg/xorg-server.h" #include "xorg/xorgVersion.h" #define PetscXstr_(s) PetscStr_(s) #define PetscStr_(s) #s char *ver = "petscpkgver(" PetscXstr_(XORG_VERSION_MAJOR.XORG_VERSION_MINOR.XORG_VERSION_PATCH.XORG_VERSION_SNAP) ")"; Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X /tmp/petsc-j92ofwaf/config.packages.X/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.packages.X/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.packages.X/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.packages.X/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.packages.X/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.packages.X/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.packages.X/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.packages.X/conftest.c:4:10: fatal error: xorg/xorg-server.h: No such file or directory 4 | #include "xorg/xorg-server.h" | ^~~~~~~~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include "xorg/xorg-server.h" #include "xorg/xorgVersion.h" #define PetscXstr_(s) PetscStr_(s) #define PetscStr_(s) #s char *ver = "petscpkgver(" PetscXstr_(XORG_VERSION_MAJOR.XORG_VERSION_MINOR.XORG_VERSION_PATCH.XORG_VERSION_SNAP) ")"; For x unable to find version information: output below, skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.X(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:994) By default we don't care about checking if the library is shared child config.packages.X took 0.061134 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.hwloc took 0.000170 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.thrust took 0.000140 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cuda(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.cuda took 0.000128 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI took 0.000138 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.MPICH took 0.000127 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:901) Loop over declared dependencies of package and error if any are missing ============================================================================================= TESTING: configureLibrary from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:859) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents of /opt/intel/oneapi/mpi/2021.8.0: ['modulefiles', 'test', 'include', 'lib', 'libfabric', 'env', 'etc', 'binding', 'benchmarks', 'licensing', 'man', 'bin'] Contents /opt/intel/oneapi/mpi/2021.8.0/: ['modulefiles', 'test', 'include', 'lib', 'libfabric', 'env', 'etc', 'binding', 'benchmarks', 'licensing', 'man', 'bin'] ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } void dummy(void) {_check_MPI_Init(); _check_MPI_Comm_create();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in User specified root directory MPI: ['/opt/intel/oneapi/mpi/2021.8.0/include', 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/intel/oneapi/mpi/2021.8.0/include', 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Found header files [] in ['/opt/intel/oneapi/mpi/2021.8.0/include', 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking for headers ['mpi.h'] in User specified root directory MPI: ['/opt/intel/oneapi/mpi/2021.8.0/include', 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/opt/intel/oneapi/mpi/2021.8.0/include', 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking include with compiler flags var CPPFLAGS ['/opt/intel/oneapi/mpi/2021.8.0/include', 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.headers -I/opt/intel/oneapi/mpi/2021.8.0/include -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mpi.h'] in ['/opt/intel/oneapi/mpi/2021.8.0/include', 'I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:660) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Unable to parse I_MPI version from header. Probably a buggy preprocessor Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Possible ERROR while running compiler:exit code 0 stderr: In file included from /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:3: /opt/intel/oneapi/mpi/2021.8.0/include/mpi.h:588:26: warning: overflow in conversion from ���long int��� to ���int��� changes value from ���20210800300��� to ���-1264036180��� [-Woverflow] 588 | #define I_MPI_NUMVERSION 20210800300 | ^~~~~~~~~~~ /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:4:17: note: in expansion of macro ���I_MPI_NUMVERSION��� 4 | int mpich_ver = I_MPI_NUMVERSION; | ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Defined "HAVE_I_MPI_NUMVERSION" to "20210800300" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:4:17: error: ���MVAPICH2_NUMVERSION��� undeclared here (not in a function); did you mean ���MPICH_NUMVERSION���? 4 | int mpich_ver = MVAPICH2_NUMVERSION; | ^~~~~~~~~~~~~~~~~~~ | MPICH_NUMVERSION Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30400002" ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-2 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a,b,c,d,flag,sendbuf[1]={1},recvbuf[1]={2}; MPI_Datatype newtype; if (MPI_Allreduce(MPI_IN_PLACE,0,1,MPI_INT,MPI_SUM,MPI_COMM_SELF)) return 0; if (MPI_Finalized(&flag)) return 0; if (MPI_Type_dup(MPI_INT,&newtype)) return 0; if (MPI_Exscan(sendbuf,recvbuf,1,MPI_INT,MPI_SUM,MPI_COMM_WORLD)) return 0; if (MPI_Reduce_scatter(sendbuf,recvbuf,sendbuf,MPI_INT,MPI_SUM,MPI_COMM_WORLD)) return 0; if (MPI_Type_get_envelope(MPI_INT,&a,&b,&c,&d)) return 0; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win = 0; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)) { }; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1] = {0}; MPI_Win win = 0; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)) { }; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int provided; if (MPI_Init_thread(0,0,MPI_THREAD_FUNNELED,&provided)) return 0;; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_INIT_THREAD" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int sendbuf[2] = {1,2}; int recvbuf[1]; if (MPI_Reduce_scatter_block(sendbuf,recvbuf,1,MPI_INT,MPI_SUM,MPI_COMM_WORLD)) return 0; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:447) Check for functions added to the interface in MPI-3 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)) { } if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)) { } if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)) return 0; if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)) return 0; if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)) return 0; if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)) return 0; if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)) return 0; if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)) return 0; if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)) return 0; if (MPI_Iallreduce(&send,&recv,1,MPI_INT,MPI_SUM,MPI_COMM_WORLD,&req)) return 0; if (MPI_Ibarrier(MPI_COMM_WORLD,&req)) return 0; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)) { } if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)) { } if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Checking for functions [yaksuri_cudai_unpack_wchar_t] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char yaksuri_cudai_unpack_wchar_t(); static void _check_yaksuri_cudai_unpack_wchar_t() { yaksuri_cudai_unpack_wchar_t(); } int main() { _check_yaksuri_cudai_unpack_wchar_t();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_yaksuri_cudai_unpack_wchar_t': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `yaksuri_cudai_unpack_wchar_t' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_yaksuri_cudai_unpack_wchar_t': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `yaksuri_cudai_unpack_wchar_t' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_yaksuri_cudai_unpack_wchar_t': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `yaksuri_cudai_unpack_wchar_t' collect2: error: ld returned 1 exit status: Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1] = {0}; MPI_Win win = 0; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win = 0; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPI4 from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:516) Check for functions added to the interface in MPI-4 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Possible ERROR while running compiler:exit code 0 stderr: /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c: In function ���main���: /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:11:11: warning: implicit declaration of function ���MPI_Send_c���; did you mean ���MPI_Send���? [-Wimplicit-function-declaration] 11 | if (MPI_Send_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD)) return 1; | ^~~~~~~~~~ | MPI_Send /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:12:11: warning: implicit declaration of function ���MPI_Send_init_c���; did you mean ���MPI_Send_init���? [-Wimplicit-function-declaration] 12 | if (MPI_Send_init_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1; | ^~~~~~~~~~~~~~~ | MPI_Send_init /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:13:11: warning: implicit declaration of function ���MPI_Isend_c���; did you mean ���MPI_Isend���? [-Wimplicit-function-declaration] 13 | if (MPI_Isend_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1; | ^~~~~~~~~~~ | MPI_Isend /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:14:11: warning: implicit declaration of function ���MPI_Recv_c���; did you mean ���MPI_Recv���? [-Wimplicit-function-declaration] 14 | if (MPI_Recv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&stat)) return 1; | ^~~~~~~~~~ | MPI_Recv /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:15:11: warning: implicit declaration of function ���MPI_Recv_init_c���; did you mean ���MPI_Recv_init���? [-Wimplicit-function-declaration] 15 | if (MPI_Recv_init_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1; | ^~~~~~~~~~~~~~~ | MPI_Recv_init /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:16:11: warning: implicit declaration of function ���MPI_Irecv_c���; did you mean ���MPI_Irecv���? [-Wimplicit-function-declaration] 16 | if (MPI_Irecv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1; | ^~~~~~~~~~~ | MPI_Irecv Source: #include "confdefs.h" #include "conffix.h" #include int main() { int buf[1]={0},dest=1,source=1,tag=0; MPI_Count count=1; MPI_Request req; MPI_Status stat; if (MPI_Send_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD)) return 1; if (MPI_Send_init_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1; if (MPI_Isend_c(buf,count,MPI_INT,dest,tag,MPI_COMM_WORLD,&req)) return 1; if (MPI_Recv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&stat)) return 1; if (MPI_Recv_init_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1; if (MPI_Irecv_c(buf,count,MPI_INT,source,tag,MPI_COMM_WORLD,&req)) return 1; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_LARGE_COUNT" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:188) Checking for location of mpiexec Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpiexec...found Checking for program /opt/intel/oneapi/mpi/2021.8.0/bin/mpiexec...found Running Executable with threads to time it out at 120 Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiexec -n 1 printenv stdout: SUDO_GID=1000 MAIL=/var/mail/root USER=root HOME=/root COLORTERM=truecolor SUDO_UID=1000 LOGNAME=root TERM=xterm-256color COLUMNS=80 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin DISPLAY=:1 LANG=en_US.UTF-8 XDG_CURRENT_DESKTOP=ubuntu:GNOME XAUTHORITY=/run/user/1000/gdm/Xauthority LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: SUDO_COMMAND=./configure --with-mpi-dir=/opt/intel/oneapi/mpi/2021.8.0/ --with-blaslapack-dir=/opt/intel/oneapi/mkl/2023.0.0/ --force SHELL=/bin/bash SUDO_USER=zhangsijie1995 PWD=/home/zhangsijie1995/Documents/Package/petsc-3.18.3 LINES=24 ZES_ENABLE_SYSMAN=1 I_MPI_HYDRA_TOPOLIB=hwloc HYDRA_BSTRAP_PGID=0 HYDRA_BSTRAP_PROXY_ID=0 HYDRA_BSTRAP_NODE_ID=0 HYDRA_BSTRAP_UPSTREAM_FD=7 HYDRA_BSTRAP_SUBTREE_SIZE=1 HYDRA_BSTRAP_TREE_WIDTH=16 HYDRA_BSTRAP_NUM_DOWNSTREAM_PROXIES=0 HYDRA_BSTRAP_DOWNSTREAM_CONTROL= HYDRA_BSTRAP_DOWNSTREAM_STDOUT= HYDRA_BSTRAP_DOWNSTREAM_STDERR= HYDRA_BSTRAP_DOWNSTREAM_PID= HYDRA_BSTRAP_LOCALHOST=SkyLight-III HYDRA_BSTRAP_DEBUG=0 HYDRA_BSTRAP_NUM_LAUNCHES=-1 HYDRA_IP_VERSION=2 HYDRA_BSTRAP_DOWNSTREAM_HOSTS= HYDRA_BSTRAP_LAUNCHER=ssh HYDRA_LAUNCH_TYPE=2 I_MPI_INFO_NUMA_NODE_NUM=1 I_MPI_INFO_NUMA_NODE_MAP= PMI_SIZE=1 PMI_RANK=0 PMI_FD=9 MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 GFORTRAN_UNBUFFERED_PRECONNECTED=y I_MPI_HYDRA_UUID=20390000-5bb4-8a96-05f2-05005ecd4e66 I_MPI_INTERNAL_MEM_POLICY=default I_MPI_INFO_STATE=0 I_MPI_INFO_MODE=775 I_MPI_INFO_VEND=1 I_MPI_INFO_FLGB=597436395 I_MPI_INFO_FLGC=2147154943 I_MPI_INFO_FLGD=-1075053569 I_MPI_INFO_FLGCEXT=-1732237380 I_MPI_INFO_FLGDEXT=-65223664 I_MPI_INFO_DESC=704643072 I_MPI_INFO_BRAND=12th Gen Intel(R) Core(TM) i9-12900K I_MPI_INFO_SERIAL=0000 I_MPI_INFO_C_NAME=Unknown I_MPI_INFO_SIGN=591474 I_MPI_INFO_LCPU=24 I_MPI_INFO_PACK=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 I_MPI_INFO_CORE=0,0,4,4,8,8,12,12,16,16,20,20,24,24,28,28,32,33,34,35,36,37,38,39 I_MPI_INFO_THREAD=0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,1,0,0,0,0,0,0,0,0 I_MPI_INFO_CACHE1=0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,9,10,11,12,13,14,15 I_MPI_INFO_CACHE2=0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,8,8,9,9,9,9 I_MPI_INFO_CACHE3=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 I_MPI_INFO_CACHES=3 I_MPI_INFO_CACHE_SHARE=2,8,128 I_MPI_INFO_CACHE_SIZE=49152,1310720,31457280 I_MPI_INFO_NC=16 I_MPI_INFO_NP=1 I_MPI_PIN_MAPPING=1:0 0 I_MPI_PIN_INFO=x0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23 Defined make macro "MPIEXEC" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpiexec" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs: ['socketfilterfw'] in listing of the specific search path: ['/usr/libexec/ApplicationFirewall'] Warning accessing /usr/libexec/ApplicationFirewall gives errors: [Errno 2] No such file or directory: '/usr/libexec/ApplicationFirewall' Checking for program /usr/local/sbin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/sbin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: SkyLight-III Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...not found Checking for program /usr/local/sbin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/sbin/ping...not found Checking for program /usr/bin/ping...found Defined make macro "PING" to "ping" Running Executable with threads to time it out at 60 Executing: ping -c 2 SkyLight-III stdout: PING SkyLight-III (127.0.1.1) 56(84) bytes of data. 64 bytes from SkyLight-III (127.0.1.1): icmp_seq=1 ttl=64 time=0.011 ms 64 bytes from SkyLight-III (127.0.1.1): icmp_seq=2 ttl=64 time=0.051 ms --- SkyLight-III ping statistics --- 2 packets transmitted, 2 received, 0% packet loss, time 1021ms rtt min/avg/max/mdev = 0.011/0.031/0.051/0.020 ms Return code from ping: 0 ============================================================================================= ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c:3:10: fatal error: mpi.h: No such file or directory 3 | #include | ^~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Compile failed inside link ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:544) Checking for MPI Datatype handles Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:588) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_MPI_SGI_barrier': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status: SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:598) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize(); (void)ierr; } int main() { _check_MPI_Finalize();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:614) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.libraries/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.libraries/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] f951: Fatal Error: Reading module ���/opt/intel/oneapi/mpi/2021.8.0/include/mpi.mod��� at line 1 column 2: Unexpected EOF compilation terminated. Source: program main use mpi integer(kind=selected_int_kind(5)) ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Compile failed inside link ============================================================================================= TESTING: configureIO from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:636) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)) { } MPI_File fh = 0; void *buf = 0; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)) { } if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)) { } MPI_Offset disp = 0; MPI_Info info = 0; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)) { } if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)) { } if (MPI_File_close(&fh)) { } ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIIncludeAndLib from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:749) Find MPI include paths and libraries from "mpicc -show" or Cray "cc --cray-print-opts=cflags/libs" and save. ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MPI.py:833) Check that previously configured for MPI include files are not in the PETSC_ARCH directory Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;(void)combiner; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;(void)combiner; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;(void)combiner; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1069) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" #define PetscXstr_(s) PetscStr_(s) #define PetscStr_(s) #s char *ver = "petscpkgver(" PetscXstr_(MPI_VERSION) ")"; Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/opt/intel/oneapi/mpi/2021.8.0/include -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include /tmp/petsc-j92ofwaf/config.packages.MPI/conftest.c Found version string: char*ver=petscpkgver(3) For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:994) By default we don't care about checking if the library is shared child config.packages.MPI took 2.267884 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.zstd took 0.000198 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.yaml took 0.000140 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/ssl.py:30) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.ssl took 0.000124 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.sprng took 0.000129 seconds Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing took 0.000070 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.revolve took 0.000135 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.radau5 took 0.000129 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.pami(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.pami took 0.000113 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.opengles took 0.000111 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.opencl took 0.000112 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.mpe took 0.000127 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.memkind took 0.000112 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/libmesh.py:69) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh took 0.000205 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.moose(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.moose took 0.000127 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg took 0.000128 seconds Not a clone of PETSc, don't need Lgrind child config.packages.lgrind took 0.000043 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.gsl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gsl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.gsl took 0.000127 seconds child config.packages.gmsh took 0.000019 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.gmp took 0.000122 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.mpfr took 0.000128 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.giflib took 0.000126 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.cub(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.cub took 0.000124 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit took 0.000127 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.cams(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cams(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.cams took 0.000124 seconds ============================================================================================= TESTING: locateC2html from config.packages.c2html(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/c2html.py:29) Determine location of c2html executable Looking for default C2html executable Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /bin/c2html...not found Checking for program /snap/bin/c2html...not found Checking for program /home/zhangsijie1995/Documents/Package/petsc-3.18.3/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html took 0.000182 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.boost(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.boost took 0.000132 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.silo(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.silo took 0.000140 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.Random123 took 0.000147 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.PARTY took 0.000136 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM took 0.000111 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine took 0.000108 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.Matlab took 0.000100 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica took 0.000110 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.regex(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:901) Loop over declared dependencies of package and error if any are missing ============================================================================================= TESTING: configureLibrary from config.packages.regex(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:927) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } void dummy(void) {_check_regexec(); _check_regcomp(); _check_regfree();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Found header files [] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking include with compiler flags var CPPFLAGS ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.MPI -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['regex.h'] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkVersion from config.packages.regex(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1069) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:994) By default we don't care about checking if the library is shared child config.packages.regex took 0.087772 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.libceed took 0.000194 seconds Defined "PYTHON_EXE" to ""/usr/bin/python3"" Defined make macro "PYTHON_EXE" to ""/usr/bin/python3"" Executing: ['/usr/bin/python3', '-c', 'import sysconfig;print(sysconfig.get_python_version())'] stdout: 3.10 Executing: ['/usr/bin/python3', '-c', 'import cython;print(cython.__version__)'] Python being used /usr/bin/python3 does not have the Cython package Executing: /usr/bin/python3 -c "import numpy" Python being used /usr/bin/python3 does not have the numpy package child config.packages.python took 0.079634 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/petsc4py.py:137) Adds rules for building petsc4py to PETSc makefiles Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py took 0.000301 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.mpi4py took 0.000193 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.opengl took 0.000114 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.glut(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.glut took 0.000112 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.GLVis took 0.000130 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack took 0.000123 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack took 0.000125 seconds child config.packages.cxxlibs took 0.000004 seconds ============================================================================================= TESTING: locateCMake from config.packages.cmake(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/cmake.py:53) Looking for default CMake executable Checking for program /usr/local/sbin/cmake...not found Checking for program /usr/local/bin/cmake...not found Checking for program /usr/sbin/cmake...not found Checking for program /usr/bin/cmake...found Defined make macro "CMAKE" to "/usr/bin/cmake" Looking for default CTest executable Checking for program /usr/local/sbin/ctest...not found Checking for program /usr/local/bin/ctest...not found Checking for program /usr/sbin/ctest...not found Checking for program /usr/bin/ctest...found Defined make macro "CTEST" to "/usr/bin/ctest" Executing: /usr/bin/cmake --version stdout: cmake version 3.22.1 CMake suite maintained and supported by Kitware (kitware.com/cmake). CMake version found 3.22.1 child config.packages.cmake took 0.010609 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp took 0.000166 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.googletest took 0.000138 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.opencascade(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencascade(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.opencascade took 0.000131 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.amgx(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.amgx(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.amgx took 0.000126 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.eigen took 0.000127 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.szlib took 0.000126 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zlib(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.zlib took 0.000123 seconds child config.packages.mathlib took 0.000005 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.tetgen took 0.000130 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.tchem took 0.000124 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.saws(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.saws took 0.000128 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.muparser took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.libpng took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.hcephes(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hcephes(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.hcephes took 0.000130 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.combblas took 0.000123 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.Triangle took 0.000124 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.metis(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.metis(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.metis took 0.000126 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic took 0.000123 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmetis(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.parmetis took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.KS(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.KS(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.KS took 0.000133 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.Chaco took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 took 0.000128 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.med(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.med took 0.000124 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.cgns took 0.000122 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io took 0.000127 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.pflotran took 0.000129 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.alquimia took 0.000128 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI took 0.000124 seconds child config.packages.flibs took 0.000003 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf took 0.000126 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.netcdf took 0.000126 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.exodusii took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack took 0.000124 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:901) Loop over declared dependencies of package and error if any are missing ============================================================================================= TESTING: configureLibrary from config.packages.pthread(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/pthread.py:19) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } void dummy(void) {_check_pthread_create();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Found header files [] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking include with compiler flags var CPPFLAGS ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.MPI -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pthread.h'] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.pthread/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; (void)a; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.pthread/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; (void)a; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread /tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 0 "/tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c" # 0 "" # 0 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 0 "" 2 # 1 "/tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c" # 1 "/tmp/petsc-j92ofwaf/config.packages.pthread/confdefs.h" 1 # 2 "/tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c" 2 # 1 "/tmp/petsc-j92ofwaf/config.packages.pthread/conffix.h" 1 # 3 "/tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c" 2 stderr: /tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c:3:10: fatal error: sys/sysctl.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c:3:10: fatal error: sys/sysctl.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~ compilation terminated. : Preprocess output after filtering: /tmp/petsc-j92ofwaf/config.packages.pthread/conftest.c:3:10: fatal error: sys/sysctl.h: No such file or directory 3 | #include | ^~~~~~~~~~~~~~ compilation terminated.: ============================================================================================= TESTING: checkVersion from config.packages.pthread(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1069) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:994) By default we don't care about checking if the library is shared child config.packages.pthread took 0.123810 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.egads(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.egads took 0.000158 seconds Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -v stdout: mpigcc for the Intel(R) MPI Library 2021.8 for Linux* Copyright Intel Corporation. ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch took 0.004560 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.mmg took 0.000131 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.parmmg took 0.000131 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.openmp took 0.000112 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.viennacl took 0.000129 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.ColPack took 0.000124 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC took 0.000128 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.openblas took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.blis(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.blis took 0.000130 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack took 0.000135 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:901) Loop over declared dependencies of package and error if any are missing ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/BlasLapack.py:494) Looking for BLAS/LAPACK in user specified directory: /opt/intel/oneapi/mkl/2023.0.0 Files and directories in that directory: ['modulefiles', 'include', 'lib', 'env', 'tools', 'benchmarks', 'licensing', 'bin', 'interfaces', 'examples'] Files and directories in that directory: ['modulefiles', 'include', 'lib', 'env', 'tools', 'benchmarks', 'licensing', 'bin', 'interfaces', 'examples'] ================================================================================ Checking for BLAS and LAPACK in User specified MATLAB [ILP64] MKL Linux lib dir ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/oneapi/mkl/2023.0.0/bin/glnxa64/mkl.so', '/opt/intel/oneapi/mkl/2023.0.0/sys/os/glnxa64/libiomp5.so', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/bin/glnxa64 for first library:mkl.s Directory of requested libraries /opt/intel/oneapi/mkl/2023.0.0/bin/glnxa64 does not exist Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/oneapi/mkl/2023.0.0/bin/glnxa64/mkl.so', '/opt/intel/oneapi/mkl/2023.0.0/sys/os/glnxa64/libiomp5.so', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/bin/glnxa64 for first library:mkl.s Directory of requested libraries /opt/intel/oneapi/mkl/2023.0.0/bin/glnxa64 does not exist Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in User specified MATLAB [ILP64] MKL MacOS lib dir ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/oneapi/mkl/2023.0.0/bin/maci64/mkl.dylib', '/opt/intel/oneapi/mkl/2023.0.0/sys/os/maci64/libiomp5.dylib', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/bin/maci64 for first library:mkl.dyli Directory of requested libraries /opt/intel/oneapi/mkl/2023.0.0/bin/maci64 does not exist Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/oneapi/mkl/2023.0.0/bin/maci64/mkl.dylib', '/opt/intel/oneapi/mkl/2023.0.0/sys/os/maci64/libiomp5.dylib', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/bin/maci64 for first library:mkl.dyli Directory of requested libraries /opt/intel/oneapi/mkl/2023.0.0/bin/maci64 does not exist Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in User specified MKL11/12 and later ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/oneapi/mkl/2023.0.0/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0 for first library:libmkl_intel_lp64. Files in directory:['modulefiles', 'include', 'lib', 'env', 'tools', 'benchmarks', 'licensing', 'bin', 'interfaces', 'examples'] Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/opt/intel/oneapi/mkl/2023.0.0/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0 for first library:libmkl_intel_lp64. Files in directory:['modulefiles', 'include', 'lib', 'env', 'tools', 'benchmarks', 'licensing', 'bin', 'interfaces', 'examples'] Unknown name mangling in BLAS/LAPACK Files and directories in that directory: ['libmkl_avx.so.2', 'libmkl_def.so.2', 'libmkl_blacs_intelmpi_ilp64.so', 'libmkl_scalapack_lp64.a', 'libmkl_intel_lp64.a', 'libmkl_lapack95_ilp64.a', 'libmkl_cdft_core.so', 'libmkl_pgi_thread.so', 'libmkl_blas95_ilp64.a', 'libmkl_sequential.so.2', 'libmkl_gf_ilp64.so', 'libmkl_scalapack_ilp64.so.2', 'libmkl_avx512.so.2', 'libmkl_intel_lp64.so.2', 'libmkl_mc3.so.2', 'libmkl_blacs_openmpi_lp64.so', 'libmkl_mc.so.2', 'libmkl_intel_thread.a', 'libmkl_core.so.2', 'libmkl_intel_ilp64.a', 'libmkl_blacs_openmpi_ilp64.so.2', 'libmkl_avx2.so.2', 'libmkl_rt.so', 'libmkl_blas95_lp64.a', 'libmkl_sequential.so', 'libmkl_vml_avx2.so.2', 'libmkl_blacs_intelmpi_ilp64.a', 'libmkl_vml_mc.so.2', 'locale', 'libmkl_vml_def.so.2', 'libmkl_sycl.so.3', 'libmkl_blacs_intelmpi_lp64.a', 'libmkl_scalapack_ilp64.so', 'libmkl_pgi_thread.a', 'libmkl_vml_mc3.so.2', 'libmkl_tbb_thread.so', 'libmkl_core.so', 'libmkl_gf_lp64.a', 'libmkl_lapack95_lp64.a', 'libmkl_gf_ilp64.so.2', 'libmkl_intel_ilp64.so', 'libmkl_scalapack_lp64.so', 'libmkl_blacs_intelmpi_lp64.so.2', 'libmkl_sequential.a', 'libmkl_gf_ilp64.a', 'libmkl_sycl.a', 'libmkl_scalapack_ilp64.a', 'libmkl_cdft_core.a', 'libmkl_pgi_thread.so.2', 'libmkl_core.a', 'libmkl_vml_cmpt.so.2', 'libmkl_blacs_intelmpi_lp64.so', 'libmkl_intel_thread.so.2', 'libmkl_blacs_openmpi_lp64.a', 'libmkl_gnu_thread.so', 'libmkl_vml_avx.so.2', 'libmkl_scalapack_lp64.so.2', 'libmkl_blacs_openmpi_lp64.so.2', 'libmkl_cdft_core.so.2', 'libmkl_gf_lp64.so', 'libmkl_sycl.so', 'libmkl_tbb_thread.so.2', 'libmkl_gf_lp64.so.2', 'libmkl_intel_ilp64.so.2', 'libmkl_blacs_openmpi_ilp64.so', 'libmkl_gnu_thread.a', 'libmkl_gnu_thread.so.2', 'libmkl_vml_avx512.so.2', 'libmkl_blacs_openmpi_ilp64.a', 'libmkl_rt.so.2', 'libmkl_intel_thread.so', 'libmkl_blacs_intelmpi_ilp64.so.2', 'libmkl_tbb_thread.a', 'libmkl_intel_lp64.so'] ================================================================================ Checking for BLAS and LAPACK in User specified MKL11/12 Linux32 ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/opt/intel/oneapi/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 for first library:libmkl_intel_lp64. Files in directory:['libmkl_avx.so.2', 'libmkl_def.so.2', 'libmkl_blacs_intelmpi_ilp64.so', 'libmkl_scalapack_lp64.a', 'libmkl_intel_lp64.a', 'libmkl_lapack95_ilp64.a', 'libmkl_cdft_core.so', 'libmkl_pgi_thread.so', 'libmkl_blas95_ilp64.a', 'libmkl_sequential.so.2', 'libmkl_gf_ilp64.so', 'libmkl_scalapack_ilp64.so.2', 'libmkl_avx512.so.2', 'libmkl_intel_lp64.so.2', 'libmkl_mc3.so.2', 'libmkl_blacs_openmpi_lp64.so', 'libmkl_mc.so.2', 'libmkl_intel_thread.a', 'libmkl_core.so.2', 'libmkl_intel_ilp64.a', 'libmkl_blacs_openmpi_ilp64.so.2', 'libmkl_avx2.so.2', 'libmkl_rt.so', 'libmkl_blas95_lp64.a', 'libmkl_sequential.so', 'libmkl_vml_avx2.so.2', 'libmkl_blacs_intelmpi_ilp64.a', 'libmkl_vml_mc.so.2', 'locale', 'libmkl_vml_def.so.2', 'libmkl_sycl.so.3', 'libmkl_blacs_intelmpi_lp64.a', 'libmkl_scalapack_ilp64.so', 'libmkl_pgi_thread.a', 'libmkl_vml_mc3.so.2', 'libmkl_tbb_thread.so', 'libmkl_core.so', 'libmkl_gf_lp64.a', 'libmkl_lapack95_lp64.a', 'libmkl_gf_ilp64.so.2', 'libmkl_intel_ilp64.so', 'libmkl_scalapack_lp64.so', 'libmkl_blacs_intelmpi_lp64.so.2', 'libmkl_sequential.a', 'libmkl_gf_ilp64.a', 'libmkl_sycl.a', 'libmkl_scalapack_ilp64.a', 'libmkl_cdft_core.a', 'libmkl_pgi_thread.so.2', 'libmkl_core.a', 'libmkl_vml_cmpt.so.2', 'libmkl_blacs_intelmpi_lp64.so', 'libmkl_intel_thread.so.2', 'libmkl_blacs_openmpi_lp64.a', 'libmkl_gnu_thread.so', 'libmkl_vml_avx.so.2', 'libmkl_scalapack_lp64.so.2', 'libmkl_blacs_openmpi_lp64.so.2', 'libmkl_cdft_core.so.2', 'libmkl_gf_lp64.so', 'libmkl_sycl.so', 'libmkl_tbb_thread.so.2', 'libmkl_gf_lp64.so.2', 'libmkl_intel_ilp64.so.2', 'libmkl_blacs_openmpi_ilp64.so', 'libmkl_gnu_thread.a', 'libmkl_gnu_thread.so.2', 'libmkl_vml_avx512.so.2', 'libmkl_blacs_openmpi_ilp64.a', 'libmkl_rt.so.2', 'libmkl_intel_thread.so', 'libmkl_blacs_intelmpi_ilp64.so.2', 'libmkl_tbb_thread.a', 'libmkl_intel_lp64.so'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } void dummy(void) {_check_ddot_();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Checking for functions [dgetrs_] in library ['/opt/intel/oneapi/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 for first library:libmkl_intel_lp64. Files in directory:['libmkl_avx.so.2', 'libmkl_def.so.2', 'libmkl_blacs_intelmpi_ilp64.so', 'libmkl_scalapack_lp64.a', 'libmkl_intel_lp64.a', 'libmkl_lapack95_ilp64.a', 'libmkl_cdft_core.so', 'libmkl_pgi_thread.so', 'libmkl_blas95_ilp64.a', 'libmkl_sequential.so.2', 'libmkl_gf_ilp64.so', 'libmkl_scalapack_ilp64.so.2', 'libmkl_avx512.so.2', 'libmkl_intel_lp64.so.2', 'libmkl_mc3.so.2', 'libmkl_blacs_openmpi_lp64.so', 'libmkl_mc.so.2', 'libmkl_intel_thread.a', 'libmkl_core.so.2', 'libmkl_intel_ilp64.a', 'libmkl_blacs_openmpi_ilp64.so.2', 'libmkl_avx2.so.2', 'libmkl_rt.so', 'libmkl_blas95_lp64.a', 'libmkl_sequential.so', 'libmkl_vml_avx2.so.2', 'libmkl_blacs_intelmpi_ilp64.a', 'libmkl_vml_mc.so.2', 'locale', 'libmkl_vml_def.so.2', 'libmkl_sycl.so.3', 'libmkl_blacs_intelmpi_lp64.a', 'libmkl_scalapack_ilp64.so', 'libmkl_pgi_thread.a', 'libmkl_vml_mc3.so.2', 'libmkl_tbb_thread.so', 'libmkl_core.so', 'libmkl_gf_lp64.a', 'libmkl_lapack95_lp64.a', 'libmkl_gf_ilp64.so.2', 'libmkl_intel_ilp64.so', 'libmkl_scalapack_lp64.so', 'libmkl_blacs_intelmpi_lp64.so.2', 'libmkl_sequential.a', 'libmkl_gf_ilp64.a', 'libmkl_sycl.a', 'libmkl_scalapack_ilp64.a', 'libmkl_cdft_core.a', 'libmkl_pgi_thread.so.2', 'libmkl_core.a', 'libmkl_vml_cmpt.so.2', 'libmkl_blacs_intelmpi_lp64.so', 'libmkl_intel_thread.so.2', 'libmkl_blacs_openmpi_lp64.a', 'libmkl_gnu_thread.so', 'libmkl_vml_avx.so.2', 'libmkl_scalapack_lp64.so.2', 'libmkl_blacs_openmpi_lp64.so.2', 'libmkl_cdft_core.so.2', 'libmkl_gf_lp64.so', 'libmkl_sycl.so', 'libmkl_tbb_thread.so.2', 'libmkl_gf_lp64.so.2', 'libmkl_intel_ilp64.so.2', 'libmkl_blacs_openmpi_ilp64.so', 'libmkl_gnu_thread.a', 'libmkl_gnu_thread.so.2', 'libmkl_vml_avx512.so.2', 'libmkl_blacs_openmpi_ilp64.a', 'libmkl_rt.so.2', 'libmkl_intel_thread.so', 'libmkl_blacs_intelmpi_ilp64.so.2', 'libmkl_tbb_thread.a', 'libmkl_intel_lp64.so'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } void dummy(void) {_check_dgetrs_();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Checking for functions [dgeev_] in library ['/opt/intel/oneapi/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread'] ['libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 for first library:libmkl_intel_lp64. Files in directory:['libmkl_avx.so.2', 'libmkl_def.so.2', 'libmkl_blacs_intelmpi_ilp64.so', 'libmkl_scalapack_lp64.a', 'libmkl_intel_lp64.a', 'libmkl_lapack95_ilp64.a', 'libmkl_cdft_core.so', 'libmkl_pgi_thread.so', 'libmkl_blas95_ilp64.a', 'libmkl_sequential.so.2', 'libmkl_gf_ilp64.so', 'libmkl_scalapack_ilp64.so.2', 'libmkl_avx512.so.2', 'libmkl_intel_lp64.so.2', 'libmkl_mc3.so.2', 'libmkl_blacs_openmpi_lp64.so', 'libmkl_mc.so.2', 'libmkl_intel_thread.a', 'libmkl_core.so.2', 'libmkl_intel_ilp64.a', 'libmkl_blacs_openmpi_ilp64.so.2', 'libmkl_avx2.so.2', 'libmkl_rt.so', 'libmkl_blas95_lp64.a', 'libmkl_sequential.so', 'libmkl_vml_avx2.so.2', 'libmkl_blacs_intelmpi_ilp64.a', 'libmkl_vml_mc.so.2', 'locale', 'libmkl_vml_def.so.2', 'libmkl_sycl.so.3', 'libmkl_blacs_intelmpi_lp64.a', 'libmkl_scalapack_ilp64.so', 'libmkl_pgi_thread.a', 'libmkl_vml_mc3.so.2', 'libmkl_tbb_thread.so', 'libmkl_core.so', 'libmkl_gf_lp64.a', 'libmkl_lapack95_lp64.a', 'libmkl_gf_ilp64.so.2', 'libmkl_intel_ilp64.so', 'libmkl_scalapack_lp64.so', 'libmkl_blacs_intelmpi_lp64.so.2', 'libmkl_sequential.a', 'libmkl_gf_ilp64.a', 'libmkl_sycl.a', 'libmkl_scalapack_ilp64.a', 'libmkl_cdft_core.a', 'libmkl_pgi_thread.so.2', 'libmkl_core.a', 'libmkl_vml_cmpt.so.2', 'libmkl_blacs_intelmpi_lp64.so', 'libmkl_intel_thread.so.2', 'libmkl_blacs_openmpi_lp64.a', 'libmkl_gnu_thread.so', 'libmkl_vml_avx.so.2', 'libmkl_scalapack_lp64.so.2', 'libmkl_blacs_openmpi_lp64.so.2', 'libmkl_cdft_core.so.2', 'libmkl_gf_lp64.so', 'libmkl_sycl.so', 'libmkl_tbb_thread.so.2', 'libmkl_gf_lp64.so.2', 'libmkl_intel_ilp64.so.2', 'libmkl_blacs_openmpi_ilp64.so', 'libmkl_gnu_thread.a', 'libmkl_gnu_thread.so.2', 'libmkl_vml_avx512.so.2', 'libmkl_blacs_openmpi_ilp64.a', 'libmkl_rt.so.2', 'libmkl_intel_thread.so', 'libmkl_blacs_intelmpi_ilp64.so.2', 'libmkl_tbb_thread.a', 'libmkl_intel_lp64.so'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } void dummy(void) {_check_dgeev_();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/BlasLapack.py:580) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['/opt/intel/oneapi/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] [] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 for first library:libmkl_intel_lp64. Files in directory:['libmkl_avx.so.2', 'libmkl_def.so.2', 'libmkl_blacs_intelmpi_ilp64.so', 'libmkl_scalapack_lp64.a', 'libmkl_intel_lp64.a', 'libmkl_lapack95_ilp64.a', 'libmkl_cdft_core.so', 'libmkl_pgi_thread.so', 'libmkl_blas95_ilp64.a', 'libmkl_sequential.so.2', 'libmkl_gf_ilp64.so', 'libmkl_scalapack_ilp64.so.2', 'libmkl_avx512.so.2', 'libmkl_intel_lp64.so.2', 'libmkl_mc3.so.2', 'libmkl_blacs_openmpi_lp64.so', 'libmkl_mc.so.2', 'libmkl_intel_thread.a', 'libmkl_core.so.2', 'libmkl_intel_ilp64.a', 'libmkl_blacs_openmpi_ilp64.so.2', 'libmkl_avx2.so.2', 'libmkl_rt.so', 'libmkl_blas95_lp64.a', 'libmkl_sequential.so', 'libmkl_vml_avx2.so.2', 'libmkl_blacs_intelmpi_ilp64.a', 'libmkl_vml_mc.so.2', 'locale', 'libmkl_vml_def.so.2', 'libmkl_sycl.so.3', 'libmkl_blacs_intelmpi_lp64.a', 'libmkl_scalapack_ilp64.so', 'libmkl_pgi_thread.a', 'libmkl_vml_mc3.so.2', 'libmkl_tbb_thread.so', 'libmkl_core.so', 'libmkl_gf_lp64.a', 'libmkl_lapack95_lp64.a', 'libmkl_gf_ilp64.so.2', 'libmkl_intel_ilp64.so', 'libmkl_scalapack_lp64.so', 'libmkl_blacs_intelmpi_lp64.so.2', 'libmkl_sequential.a', 'libmkl_gf_ilp64.a', 'libmkl_sycl.a', 'libmkl_scalapack_ilp64.a', 'libmkl_cdft_core.a', 'libmkl_pgi_thread.so.2', 'libmkl_core.a', 'libmkl_vml_cmpt.so.2', 'libmkl_blacs_intelmpi_lp64.so', 'libmkl_intel_thread.so.2', 'libmkl_blacs_openmpi_lp64.a', 'libmkl_gnu_thread.so', 'libmkl_vml_avx.so.2', 'libmkl_scalapack_lp64.so.2', 'libmkl_blacs_openmpi_lp64.so.2', 'libmkl_cdft_core.so.2', 'libmkl_gf_lp64.so', 'libmkl_sycl.so', 'libmkl_tbb_thread.so.2', 'libmkl_gf_lp64.so.2', 'libmkl_intel_ilp64.so.2', 'libmkl_blacs_openmpi_ilp64.so', 'libmkl_gnu_thread.a', 'libmkl_gnu_thread.so.2', 'libmkl_vml_avx512.so.2', 'libmkl_blacs_openmpi_ilp64.a', 'libmkl_rt.so.2', 'libmkl_intel_thread.so', 'libmkl_blacs_intelmpi_ilp64.so.2', 'libmkl_tbb_thread.a', 'libmkl_intel_lp64.so'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } void dummy(void) {_check_mkl_set_num_threads();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPIFORT" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBRT" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGCC_S" to "1" Defined "HAVE_LIBQUADMATH" to "1" Checking for functions [flexiblas_avail] in library ['/opt/intel/oneapi/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] [] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 for first library:libmkl_intel_lp64. Files in directory:['libmkl_avx.so.2', 'libmkl_def.so.2', 'libmkl_blacs_intelmpi_ilp64.so', 'libmkl_scalapack_lp64.a', 'libmkl_intel_lp64.a', 'libmkl_lapack95_ilp64.a', 'libmkl_cdft_core.so', 'libmkl_pgi_thread.so', 'libmkl_blas95_ilp64.a', 'libmkl_sequential.so.2', 'libmkl_gf_ilp64.so', 'libmkl_scalapack_ilp64.so.2', 'libmkl_avx512.so.2', 'libmkl_intel_lp64.so.2', 'libmkl_mc3.so.2', 'libmkl_blacs_openmpi_lp64.so', 'libmkl_mc.so.2', 'libmkl_intel_thread.a', 'libmkl_core.so.2', 'libmkl_intel_ilp64.a', 'libmkl_blacs_openmpi_ilp64.so.2', 'libmkl_avx2.so.2', 'libmkl_rt.so', 'libmkl_blas95_lp64.a', 'libmkl_sequential.so', 'libmkl_vml_avx2.so.2', 'libmkl_blacs_intelmpi_ilp64.a', 'libmkl_vml_mc.so.2', 'locale', 'libmkl_vml_def.so.2', 'libmkl_sycl.so.3', 'libmkl_blacs_intelmpi_lp64.a', 'libmkl_scalapack_ilp64.so', 'libmkl_pgi_thread.a', 'libmkl_vml_mc3.so.2', 'libmkl_tbb_thread.so', 'libmkl_core.so', 'libmkl_gf_lp64.a', 'libmkl_lapack95_lp64.a', 'libmkl_gf_ilp64.so.2', 'libmkl_intel_ilp64.so', 'libmkl_scalapack_lp64.so', 'libmkl_blacs_intelmpi_lp64.so.2', 'libmkl_sequential.a', 'libmkl_gf_ilp64.a', 'libmkl_sycl.a', 'libmkl_scalapack_ilp64.a', 'libmkl_cdft_core.a', 'libmkl_pgi_thread.so.2', 'libmkl_core.a', 'libmkl_vml_cmpt.so.2', 'libmkl_blacs_intelmpi_lp64.so', 'libmkl_intel_thread.so.2', 'libmkl_blacs_openmpi_lp64.a', 'libmkl_gnu_thread.so', 'libmkl_vml_avx.so.2', 'libmkl_scalapack_lp64.so.2', 'libmkl_blacs_openmpi_lp64.so.2', 'libmkl_cdft_core.so.2', 'libmkl_gf_lp64.so', 'libmkl_sycl.so', 'libmkl_tbb_thread.so.2', 'libmkl_gf_lp64.so.2', 'libmkl_intel_ilp64.so.2', 'libmkl_blacs_openmpi_ilp64.so', 'libmkl_gnu_thread.a', 'libmkl_gnu_thread.so.2', 'libmkl_vml_avx512.so.2', 'libmkl_blacs_openmpi_ilp64.a', 'libmkl_rt.so.2', 'libmkl_intel_thread.so', 'libmkl_blacs_intelmpi_ilp64.so.2', 'libmkl_tbb_thread.a', 'libmkl_intel_lp64.so'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flexiblas_avail(); static void _check_flexiblas_avail() { flexiblas_avail(); } int main() { _check_flexiblas_avail();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_flexiblas_avail': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `flexiblas_avail' collect2: error: ld returned 1 exit status Linker output before filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_flexiblas_avail': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `flexiblas_avail' collect2: error: ld returned 1 exit status : Linker output after filtering: /usr/bin/ld: /tmp/petsc-j92ofwaf/config.libraries/conftest.o: in function `_check_flexiblas_avail': /tmp/petsc-j92ofwaf/config.libraries/conftest.c:5: undefined reference to `flexiblas_avail' collect2: error: ld returned 1 exit status: Defined "HAVE_MKL_LIBS" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.c:3:10: fatal error: mkl_spblas.h: No such file or directory 3 | #include "mkl_spblas.h" | ^~~~~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include "mkl_spblas.h" int main() { ; return 0; } MKL include path not automatically picked up by compiler. Trying to find mkl_spblas.h... ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mkl_spblas.h'] in ['/opt/intel/oneapi/mkl/2023.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/opt/intel/oneapi/mkl/2023.0.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.headers -I/opt/intel/oneapi/mkl/2023.0.0/include /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mkl_spblas.h'] in ['/opt/intel/oneapi/mkl/2023.0.0/include'] MKL mkl_spblas.h found at:/opt/intel/oneapi/mkl/2023.0.0/include MKL include path set to ['/opt/intel/oneapi/mkl/2023.0.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mkl_version.h" #define PetscXstr_(s) PetscStr_(s) #define PetscStr_(s) #s char *ver = "petscpkgver(" PetscXstr_(INTEL_MKL_VERSION) ")"; Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/opt/intel/oneapi/mpi/2021.8.0/include -I/opt/intel/oneapi/mkl/2023.0.0/include /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.c Found version string: char*ver=petscpkgver(20230000) For blaslapack need <= 20230000 <= Defined "HAVE_MKL_INCLUDES" to "1" ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/BlasLapack.py:691) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['/opt/intel/oneapi/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] [] Checking directory of requested libraries:/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 for first library:libmkl_intel_lp64. Files in directory:['libmkl_avx.so.2', 'libmkl_def.so.2', 'libmkl_blacs_intelmpi_ilp64.so', 'libmkl_scalapack_lp64.a', 'libmkl_intel_lp64.a', 'libmkl_lapack95_ilp64.a', 'libmkl_cdft_core.so', 'libmkl_pgi_thread.so', 'libmkl_blas95_ilp64.a', 'libmkl_sequential.so.2', 'libmkl_gf_ilp64.so', 'libmkl_scalapack_ilp64.so.2', 'libmkl_avx512.so.2', 'libmkl_intel_lp64.so.2', 'libmkl_mc3.so.2', 'libmkl_blacs_openmpi_lp64.so', 'libmkl_mc.so.2', 'libmkl_intel_thread.a', 'libmkl_core.so.2', 'libmkl_intel_ilp64.a', 'libmkl_blacs_openmpi_ilp64.so.2', 'libmkl_avx2.so.2', 'libmkl_rt.so', 'libmkl_blas95_lp64.a', 'libmkl_sequential.so', 'libmkl_vml_avx2.so.2', 'libmkl_blacs_intelmpi_ilp64.a', 'libmkl_vml_mc.so.2', 'locale', 'libmkl_vml_def.so.2', 'libmkl_sycl.so.3', 'libmkl_blacs_intelmpi_lp64.a', 'libmkl_scalapack_ilp64.so', 'libmkl_pgi_thread.a', 'libmkl_vml_mc3.so.2', 'libmkl_tbb_thread.so', 'libmkl_core.so', 'libmkl_gf_lp64.a', 'libmkl_lapack95_lp64.a', 'libmkl_gf_ilp64.so.2', 'libmkl_intel_ilp64.so', 'libmkl_scalapack_lp64.so', 'libmkl_blacs_intelmpi_lp64.so.2', 'libmkl_sequential.a', 'libmkl_gf_ilp64.a', 'libmkl_sycl.a', 'libmkl_scalapack_ilp64.a', 'libmkl_cdft_core.a', 'libmkl_pgi_thread.so.2', 'libmkl_core.a', 'libmkl_vml_cmpt.so.2', 'libmkl_blacs_intelmpi_lp64.so', 'libmkl_intel_thread.so.2', 'libmkl_blacs_openmpi_lp64.a', 'libmkl_gnu_thread.so', 'libmkl_vml_avx.so.2', 'libmkl_scalapack_lp64.so.2', 'libmkl_blacs_openmpi_lp64.so.2', 'libmkl_cdft_core.so.2', 'libmkl_gf_lp64.so', 'libmkl_sycl.so', 'libmkl_tbb_thread.so.2', 'libmkl_gf_lp64.so.2', 'libmkl_intel_ilp64.so.2', 'libmkl_blacs_openmpi_ilp64.so', 'libmkl_gnu_thread.a', 'libmkl_gnu_thread.so.2', 'libmkl_vml_avx512.so.2', 'libmkl_blacs_openmpi_ilp64.a', 'libmkl_rt.so.2', 'libmkl_intel_thread.so', 'libmkl_blacs_intelmpi_ilp64.so.2', 'libmkl_tbb_thread.a', 'libmkl_intel_lp64.so'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } void dummy(void) {_check_lsame_();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPIFORT" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBRT" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBGCC_S" to "1" Defined "HAVE_LIBQUADMATH" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.setCompilers/libconftest.so -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.setCompilers/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/BlasLapack.py:750) Determines if BLAS/LAPACK routines use 32 or 64 bit integers 32 bit blas indices based on the BLAS/LAPACK library being used Checking if sdot() returns a float or a double ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern float sdot_(const int*,const float*,const int *,const float*,const int*); float x1[1] = {3.0}; int one1 = 1; long long int ione1 = 1; float sdotresult = 0; int blasint64 = 0; if (!blasint64) { sdotresult = sdot_(&one1,x1,&one1,x1,&one1); } else { sdotresult = sdot_((const int*)&ione1,x1,(const int*)&ione1,x1,(const int*)&ione1); } fprintf(output, "--known-sdot-returns-double=%d",sdotresult != 9); ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest Checking for sdot() return double: result 0 Checking if snrm() returns a float or a double ======== Checking running linked program Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern float snrm2_(const int*,const float*,const int*); float x2[1] = {3.0}; int one2 = 1; long long int ione2 = 1; float normresult = 0; int blasint64 = 0; if (!blasint64) { normresult = snrm2_(&one2,x2,&one2); } else { normresult = snrm2_((const int*)&ione2,x2,(const int*)&ione2); } fprintf(output, "--known-snrm2-returns-double=%d",normresult != 3); ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest to see if it can be run Executing: /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest Checking for snrm2() return double: result 0 ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1069) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mkl_version.h" #define PetscXstr_(s) PetscStr_(s) #define PetscStr_(s) #s char *ver = "petscpkgver(" PetscXstr_(INTEL_MKL_VERSION) ")"; Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/opt/intel/oneapi/mpi/2021.8.0/include -I/opt/intel/oneapi/mkl/2023.0.0/include /tmp/petsc-j92ofwaf/config.packages.BlasLapack/conftest.c Found version string: char*ver=petscpkgver(20230000) For blaslapack need <= 20230000 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:994) By default we don't care about checking if the library is shared child config.packages.BlasLapack took 2.044166 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 took 0.000188 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.spai(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.spai took 0.000142 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.raja(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.raja(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.raja took 0.000128 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.pARMS took 0.000129 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.p4est(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.p4est took 0.000127 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:901) Loop over declared dependencies of package and error if any are missing ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ================================================================================== Checking for a functional mkl_sparse_optimize Checking for library in Compiler specific search MKL_SPARSE_OPTIMIZE: [] ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [mkl_sparse_optimize mkl_sparse_s_create_bsr] in library [] ['/opt/intel/oneapi/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_sparse_optimize(); static void _check_mkl_sparse_optimize() { mkl_sparse_optimize(); } char mkl_sparse_s_create_bsr(); static void _check_mkl_sparse_s_create_bsr() { mkl_sparse_s_create_bsr(); } int main() { _check_mkl_sparse_optimize(); _check_mkl_sparse_s_create_bsr();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_sparse_optimize(); static void _check_mkl_sparse_optimize() { mkl_sparse_optimize(); } char mkl_sparse_s_create_bsr(); static void _check_mkl_sparse_s_create_bsr() { mkl_sparse_s_create_bsr(); } void dummy(void) {_check_mkl_sparse_optimize(); _check_mkl_sparse_s_create_bsr();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MKL_SPARSE_OPTIMIZE: ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Found header files [] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking for headers ['mkl.h', 'mkl_spblas.h'] in Compiler specific search MKL_SPARSE_OPTIMIZE: ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mkl.h', 'mkl_spblas.h'] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking include with compiler flags var CPPFLAGS ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include', '/opt/intel/oneapi/mkl/2023.0.0/include', '/opt/intel/oneapi/mpi/2021.8.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include', '/opt/intel/oneapi/mkl/2023.0.0/include', '/opt/intel/oneapi/mpi/2021.8.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mkl.h', 'mkl_spblas.h'] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkHaveUsableSp2m from config.packages.mkl_sparse_optimize(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/mkl_sparse_optimize.py:21) Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include sparse_request_t request = SPARSE_STAGE_FULL_MULT_NO_VAL; int main() { ; return 0; } Looking for mkl_sparse_sp2m() that is usable for MatMatMultSymbolic()/Numeric(): result 1 Defined "HAVE_MKL_SPARSE_SP2M_FEATURE" to "1" ============================================================================================= TESTING: checkMklSpblasDeprecated from config.packages.mkl_sparse_optimize(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/mkl_sparse_optimize.py:33) Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize/conftest.c:4:11: error: expected ���;��� before ���void��� 4 | DEPRECATED void foo(); | ^~~~~ | ; Source: #include "confdefs.h" #include "conffix.h" #include DEPRECATED void foo(); int main() { ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include MKL_DEPRECATED void foo(); int main() { ; return 0; } Checking to see if original MKL SpBLAS is declared deprecated: result 1 Defined "MKL_SPBLAS_DEPRECATED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1069) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:994) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize took 0.469176 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:901) Loop over declared dependencies of package and error if any are missing ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/mkl_sparse.py:21) ================================================================================== Checking for a functional mkl_sparse Checking for library in Compiler specific search MKL_SPARSE: [] ============================================================================================= TESTING: check from config.libraries(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/libraries.py:168) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [mkl_dcsrmv] in library [] ['/opt/intel/oneapi/mkl/2023.0.0/lib/intel64/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', 'libm.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lmpifort', '-lmpi', '-lrt', '-lpthread', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11', '-L/usr/lib/gcc/x86_64-linux-gnu/11', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release', '-Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_dcsrmv(); static void _check_mkl_dcsrmv() { mkl_dcsrmv(); } int main() { _check_mkl_dcsrmv();; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_dcsrmv(); static void _check_mkl_dcsrmv() { mkl_dcsrmv(); } void dummy(void) {_check_mkl_dcsrmv();} Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -c -o /tmp/petsc-j92ofwaf/config.compilers/conftest.o -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.libraries -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.F90 Possible ERROR while running compiler:exit code 0 stderr: f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0��� [-Wmissing-include-dirs] f951: Warning: Nonexistent include directory ���I_MPI_SUBSTITUTE_INSTALLDIR/include��� [-Wmissing-include-dirs] Source: program main print*,'testing' stop end Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -o /tmp/petsc-j92ofwaf/config.compilers/conftest -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 /tmp/petsc-j92ofwaf/config.compilers/conftest.o /tmp/petsc-j92ofwaf/config.compilers/confc.o -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -lgfortran -lm -lgcc_s -lquadmath -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MKL_SPARSE: ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Found header files [] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking for headers ['mkl.h', 'mkl_spblas.h'] in Compiler specific search MKL_SPARSE: ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkInclude from config.headers(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mkl.h', 'mkl_spblas.h'] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] Checking include with compiler flags var CPPFLAGS ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include', '/opt/intel/oneapi/mkl/2023.0.0/include', '/opt/intel/oneapi/mpi/2021.8.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Checking include with compiler flags var CPPFLAGS ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include', '/opt/intel/oneapi/mkl/2023.0.0/include', '/opt/intel/oneapi/mpi/2021.8.0/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.packages.X -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -II_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0 -II_MPI_SUBSTITUTE_INSTALLDIR/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include /tmp/petsc-j92ofwaf/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mkl.h', 'mkl_spblas.h'] in ['I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0', 'I_MPI_SUBSTITUTE_INSTALLDIR/include'] ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1069) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:994) By default we don't care about checking if the library is shared child config.packages.mkl_sparse took 0.403238 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso took 0.000196 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kokkos(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.kokkos took 0.000134 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos-kernels(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kokkos-kernels(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.kokkos-kernels took 0.000128 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.htool(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.htool(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.htool took 0.000126 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.magma(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.magma(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.magma took 0.000129 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.kblas(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kblas(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.kblas took 0.000127 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.h2opus(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.h2opus(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.h2opus took 0.000121 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.fftw(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fftw(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.fftw took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.elemental(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.elemental(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.elemental took 0.000129 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.ml(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ml(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.ml took 0.000130 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_pardiso(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/mkl_pardiso.py:21) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.mkl_pardiso took 0.000123 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU_DIST(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU_DIST took 0.000126 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU took 0.000122 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.PaStiX(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PaStiX(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.PaStiX took 0.000123 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.scalapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.scalapack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.scalapack took 0.000123 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.strumpack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/strumpack.py:66) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.strumpack(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.strumpack took 0.000148 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.MUMPS(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MUMPS.py:67) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MUMPS(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.MUMPS took 0.000156 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.MOAB(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MOAB(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.MOAB took 0.000123 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.SuiteSparse(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/SuiteSparse.py:176) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.SuiteSparse took 0.000137 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.Chombo(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/Chombo.py:126) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chombo(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.Chombo took 0.000131 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.hypre(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/hypre.py:182) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hypre(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.hypre took 0.000130 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.Trilinos(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Trilinos(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.Trilinos took 0.000124 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.xSDKTrilinos(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.xSDKTrilinos took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.mstk(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mstk(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:998) Called if --with-packagename=0; does nothing by default child config.packages.mstk took 0.000125 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/slepc.py:97) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc took 0.000218 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.hpddm(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hpddm(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/hpddm.py:106) Defined make rule "hpddm-build" with dependencies "" and code [] Defined make rule "hpddm-install" with dependencies "" and code [] child config.packages.hpddm took 0.000205 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.bamg(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.bamg(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/bamg.py:85) Defined make rule "bamg-build" with dependencies "" and code [] Defined make rule "bamg-install" with dependencies "" and code [] child config.packages.bamg took 0.000204 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.MFEM(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MFEM(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/MFEM.py:217) Defined make rule "mfem-build" with dependencies "" and code [] Defined make rule "mfem-install" with dependencies "" and code [] child config.packages.MFEM took 0.000205 seconds ============================================================================================= TESTING: consistencyChecks from config.packages.AMReX(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/package.py:1002) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.AMReX(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/BuildSystem/config/packages/AMReX.py:151) Adds rules for building AMReX to PETSc makefiles Defined make rule "amrex-build" with dependencies "" and code [] Defined make rule "amrex-install" with dependencies "" and code [] child config.packages.AMReX took 0.000215 seconds ============================================================================================= TESTING: configureRTLDDefault from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:732) Check for dynamic library feature Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c:4:15: error: ���RTLD_DEFAULT��� undeclared here (not in a function) 4 | void *ptr = RTLD_DEFAULT; | ^~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ============================================================================================= TESTING: configurePrefetch from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:534) Sees if there are any prefetch functions supported Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" ============================================================================================= TESTING: configureUnused from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:602) Sees if __attribute((unused)) is supported Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); (void)j; typedef void* atype; __attribute((unused)) atype a; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "UNUSED" to "__attribute((unused))" ============================================================================================= TESTING: configureDeprecated from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:620) Check if __attribute((deprecated)) is supported Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define DEPRECATED_FUNCTION(why) __attribute__((deprecated(why))) DEPRECATED_FUNCTION("asdasdadsasd") int myfunc(void) { return 1; } int main() { ; return 0; } configureDeprecated: '__attribute__((deprecated(why)))' appears to work Defined "DEPRECATED_FUNCTION(why)" to "__attribute__((deprecated(why)))" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define DEPRECATED_TYPEDEF(why) __attribute__((deprecated(why))) typedef int my_int DEPRECATED_TYPEDEF("asdasdadsasd"); int main() { ; return 0; } configureDeprecated: '__attribute__((deprecated(why)))' appears to work Defined "DEPRECATED_TYPEDEF(why)" to "__attribute__((deprecated(why)))" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define DEPRECATED_ENUM(why) __attribute__((deprecated(why))) enum E { oldval DEPRECATED_ENUM("asdasdadsasd"), newval }; int main() { ; return 0; } configureDeprecated: '__attribute__((deprecated(why)))' appears to work Defined "DEPRECATED_ENUM(why)" to "__attribute__((deprecated(why)))" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define TEST _Pragma("GCC warning "Testing _Pragma"") value int main() { ; return 0; } Defined "DEPRECATED_MACRO(why)" to "_Pragma(why)" ============================================================================================= TESTING: configureIsatty from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:614) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ============================================================================================= TESTING: configureExpect from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:685) Sees if the __builtin_expect directive is supported Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" ============================================================================================= TESTING: configureAlign from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:669) Check if __attribute(aligned) is supported Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" struct mystruct {int myint;} __attribute((aligned(16))); char assert_aligned[(sizeof(struct mystruct)==16)*2-1]; int main() { ; return 0; } Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ============================================================================================= TESTING: configureFunctionName from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:692) Sees if the compiler supports __func__ or a variant. Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "FUNCTION_NAME_C" to "__func__" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "FUNCTION_NAME_CXX" to "__func__" ============================================================================================= TESTING: configureIntptrt from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:710) Determine what to use for uintptr_t Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x; (void)i; return 0; } Defined "UINTPTR_T" to "uintptr_t" ============================================================================================= TESTING: configureSolaris from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:738) Solaris specific stuff ============================================================================================= TESTING: configureLinux from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:760) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ============================================================================================= TESTING: configureDarwin from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:751) Log brew configuration for Apple systems Executing: ['brew', 'config'] ============================================================================================= TESTING: configureWin32 from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:766) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory 4 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetComputerName] in library ['kernel32'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory 4 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory 4 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['advapi32'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory 4 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['User32.lib'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory 4 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['user32'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory 4 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory 4 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.libraries/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/config.libraries/conftest.c:4:10: fatal error: windows.h: No such file or directory 4 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for type: int32_t Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/config.types/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a; (void)a; return 0; } int32_t found Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; (void)u; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; (void)a; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c:3:10: fatal error: windows.h: No such file or directory 3 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c:3:10: fatal error: windows.h: No such file or directory 3 | #include | ^~~~~~~~~~~ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/home/zhangsijie1995/Documents/Package/petsc-3.18.3"" Defined make macro "wPETSC_DIR" to "/home/zhangsijie1995/Documents/Package/petsc-3.18.3" Defined "ARCH" to ""arch-linux-c-debug"" ============================================================================================= TESTING: configureCygwinBrokenPipe from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:844) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html ============================================================================================= TESTING: configureDefaultArch from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:860) ============================================================================================= TESTING: configureScript from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:877) Output a script in the conf directory which will reproduce the configuration ============================================================================================= TESTING: configureInstall from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:916) Setup the directories for installation Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "========================================="', '-@echo "Now to check if the libraries are working do:"', '-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check"', '-@echo "========================================="'] ============================================================================================= TESTING: configureGCOV from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:932) Checking for configuring with gcov, from --with-gcov ============================================================================================= TESTING: configureAtoll from PETSc.Configure(/home/zhangsijie1995/Documents/Package/petsc-3.18.3/config/PETSc/Configure.py:597) Checks if atoll exists Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); (void)v; return 0; } Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_ATOLL" to "1" ============================================================================================= Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -c -o /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.o -I/tmp/petsc-j92ofwaf/config.compilerFlags -I/tmp/petsc-j92ofwaf/config.compilersFortran -I/tmp/petsc-j92ofwaf/config.headers -I/tmp/petsc-j92ofwaf/config.utilities.cacheDetails -I/tmp/petsc-j92ofwaf/config.functions -I/tmp/petsc-j92ofwaf/config.utilities.featureTestMacros -I/tmp/petsc-j92ofwaf/config.utilities.missing -I/tmp/petsc-j92ofwaf/PETSc.options.sharedLibraries -I/tmp/petsc-j92ofwaf/PETSc.options.scalarTypes -I/tmp/petsc-j92ofwaf/config.packages.MPI -I/tmp/petsc-j92ofwaf/config.packages.pthread -I/tmp/petsc-j92ofwaf/config.setCompilers -I/tmp/petsc-j92ofwaf/config.packages.BlasLapack -I/tmp/petsc-j92ofwaf/config.compilers -I/tmp/petsc-j92ofwaf/config.packages.mkl_sparse_optimize -I/tmp/petsc-j92ofwaf/config.libraries -I/tmp/petsc-j92ofwaf/config.types -I/tmp/petsc-j92ofwaf/PETSc.Configure -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 /tmp/petsc-j92ofwaf/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" ============================================================================================= Executing: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -show stdout: gcc -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Defined "MPICC_SHOW" to ""gcc -II_MPI_SUBSTITUTE_INSTALLDIR/include -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release -LI_MPI_SUBSTITUTE_INSTALLDIR/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl"" Defined make macro "CC_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0" Defined "HAVE_CXX" to "1" Defined make macro "CXXPP_FLAGS" to "" Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC" Defined make macro "CXX_LINKER" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx" Defined make macro "CXX_LINKER_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0" Defined make macro "CPP_FLAGS" to " " Defined make macro "PCC" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc" Defined make macro "PCC_FLAGS" to "$(CC_FLAGS)" Defined make macro "CC_SUFFIX" to "o" Defined make macro "PCC_LINKER" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0" Defined make macro "CC_LINKER_SUFFIX" to "" Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 " Defined make macro "FC_SUFFIX" to "o" Defined make macro "FC_LINKER" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpif90" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 " Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Defined make macro "SL_LINKER" to "/opt/intel/oneapi/mpi/2021.8.0/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" ============================================================================================= Defined "HAVE_MKL_SPARSE" to "1" Defined make macro "MKL_SPARSE_LIB" to "" Defined make macro "MKL_SPARSE_INCLUDE" to "" Defined "HAVE_MKL_SPARSE_OPTIMIZE" to "1" Defined make macro "MKL_SPARSE_OPTIMIZE_LIB" to "" Defined make macro "MKL_SPARSE_OPTIMIZE_INCLUDE" to "" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread" Defined make macro "BLASLAPACK_INCLUDE" to "-I/opt/intel/oneapi/mkl/2023.0.0/include" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_MATHLIB" to "1" Defined make macro "MATHLIB_LIB" to "-lm" Defined make macro "MATHLIB_INCLUDE" to "" Defined "HAVE_REGEX" to "1" Defined make macro "REGEX_LIB" to "" Defined make macro "REGEX_INCLUDE" to "" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/opt/intel/oneapi/mpi/2021.8.0/include" Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl" Defined make macro "PETSC_CC_INCLUDES" to "-I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include" Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include" Defined make macro "PETSC_FC_INCLUDES" to "-I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include" Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include" Defined "LIB_DIR" to ""/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -lpetsc -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--with-mpi-dir=/opt/intel/oneapi/mpi/2021.8.0/ --with-blaslapack-dir=/opt/intel/oneapi/mkl/2023.0.0/ --force" ================================================================================ child PETSc.Configure took 0.507773 seconds child sum 13.712547 child total 13.718032 **** arch-linux-c-debug/lib/petsc/conf/petscvariables **** FAST_AR_FLAGS = Scq AR_FLAGS = cr AR_ARGFILE = yes PCC_AT_FILE = 1 C_VERSION = gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 MPICC_SHOW = gcc -I\"I_MPI_SUBSTITUTE_INSTALLDIR/include\" -L\"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release\" -L\"I_MPI_SUBSTITUTE_INSTALLDIR/lib\" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker \"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release\" -Xlinker -rpath -Xlinker \"I_MPI_SUBSTITUTE_INSTALLDIR/lib\" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl Cxx_VERSION = g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 MPICXX_SHOW = g++ -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpicxx -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl FC_VERSION = GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 MPIFC_SHOW = gfortran -fallow-argument-mismatch -I"I_MPI_SUBSTITUTE_INSTALLDIR/include/gfortran/11.1.0" -I"I_MPI_SUBSTITUTE_INSTALLDIR/include" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -L"I_MPI_SUBSTITUTE_INSTALLDIR/lib" -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib/release" -Xlinker -rpath -Xlinker "I_MPI_SUBSTITUTE_INSTALLDIR/lib" -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl C_DEPFLAGS = -MMD -MP CXX_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D FC_DEPFLAGS = -MMD -MP wPETSC_DIR = /home/zhangsijie1995/Documents/Package/petsc-3.18.3 CC_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 CXXPP_FLAGS = CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC CXX_LINKER = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx CXX_LINKER_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 CPP_FLAGS = PCC = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc PCC_FLAGS = $(CC_FLAGS) CC_SUFFIX = o PCC_LINKER = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc PCC_LINKER_FLAGS = -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 CC_LINKER_SUFFIX = FPP_FLAGS = FC_FLAGS = -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 FC_SUFFIX = o FC_LINKER = /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 FC_LINKER_FLAGS = -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 FC_MODULE_FLAG = -I FC_MODULE_OUTPUT_FLAG = -J SL_LINKER = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} SL_LINKER_SUFFIX = so SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} PETSC_LANGUAGE = CONLY PETSC_SCALAR = real PETSC_PRECISION = double MKL_SPARSE_LIB = MKL_SPARSE_INCLUDE = MKL_SPARSE_OPTIMIZE_LIB = MKL_SPARSE_OPTIMIZE_INCLUDE = BLASLAPACK_LIB = -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread BLASLAPACK_INCLUDE = -I/opt/intel/oneapi/mkl/2023.0.0/include PTHREAD_LIB = PTHREAD_INCLUDE = MATHLIB_LIB = -lm MATHLIB_INCLUDE = REGEX_LIB = REGEX_INCLUDE = MPI_LIB = MPI_INCLUDE = -I/opt/intel/oneapi/mpi/2021.8.0/include PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl PETSC_CC_INCLUDES = -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include PETSC_CC_INCLUDES_INSTALL = -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include PETSC_FC_INCLUDES = -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include PETSC_FC_INCLUDES_INSTALL = -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/include -I/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/include -I/opt/intel/oneapi/mkl/2023.0.0/include -I/opt/intel/oneapi/mpi/2021.8.0/include LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SHLIBS = libpetsc PETSC_LIB_BASIC = -lpetsc PETSC_KSP_LIB_BASIC = -lpetsc PETSC_TS_LIB_BASIC = -lpetsc PETSC_TAO_LIB_BASIC = -lpetsc PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Wl,-rpath,/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -L/home/zhangsijie1995/Documents/Package/petsc-3.18.3/I_MPI_SUBSTITUTE_INSTALLDIR/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/11 -L/usr/lib/gcc/x86_64-linux-gnu/11 -lpetsc -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -lstdc++ -ldl -lmpifort -lmpi -lrt -lpthread -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CONFIGURE_OPTIONS = --with-mpi-dir=/opt/intel/oneapi/mpi/2021.8.0/ --with-blaslapack-dir=/opt/intel/oneapi/mkl/2023.0.0/ --force MKDIR = /usr/bin/mkdir -p SHELL = /usr/bin/bash SED = /usr/bin/sed SEDINPLACE = /usr/bin/sed -i MV = /usr/bin/mv CP = /usr/bin/cp GREP = /usr/bin/grep RM = /usr/bin/rm -f DIFF = /usr/bin/diff -w PYTHON = /usr/bin/python3 CC = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc CPP = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -E CXX = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx CXXPP = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -E FC = /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 AR = /usr/bin/ar RANLIB = /usr/bin/ranlib AR_LIB_SUFFIX = a LD_SHARED = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc DYNAMICLINKER = /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc CC_LINKER_SLFLAG = -Wl,-rpath, FC_LINKER_SLFLAG = -Wl,-rpath, CLANGUAGE = C EXEFLAGS = -export-dynamic PREFIXDIR = /home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 MAKE = /usr/bin/gmake MAKE_USER = make OMAKE_PRINTDIR = /usr/bin/gmake --print-directory OMAKE = /usr/bin/gmake --no-print-directory MAKE_PAR_OUT_FLG = --output-sync=recurse MAKE_NP = 18 MAKE_TEST_NP = 12 MAKE_LOAD = 36.0 NPMAX = 24 SONAME_FUNCTION = $(1).$(SL_LINKER_SUFFIX).$(2) SL_LINKER_FUNCTION = -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true MPIEXEC = /opt/intel/oneapi/mpi/2021.8.0/bin/mpiexec HOSTNAME = hostname PING = ping CMAKE = /usr/bin/cmake CTEST = /usr/bin/ctest PYTHON_EXE = "/usr/bin/python3" PETSC_TEST_OPTIONS = -use_gpu_aware_mpi 0 **** arch-linux-c-debug/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "=========================================" -@echo "Now to check if the libraries are working do:" -@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_linux amrex-build: amrex-install: mfem-build: mfem-install: slepc-build: slepc-install: bamg-build: bamg-install: hpddm-build: hpddm-install: libmesh-build: libmesh-install: petsc4py-build: petsc4py-install: petsc4pytest: **** arch-linux-c-debug/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_ARCH "arch-linux-c-debug" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) __attribute__((deprecated(why))) #define PETSC_DEPRECATED_FUNCTION(why) __attribute__((deprecated(why))) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute__((deprecated(why))) #define PETSC_DIR "/home/zhangsijie1995/Documents/Package/petsc-3.18.3" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXECUTABLE_EXPORT 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_FREE_LINE_LENGTH_NONE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_FSTATAT 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_I_MPI_NUMVERSION 20210800300 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MKL_INCLUDES 1 #define PETSC_HAVE_MKL_LIBS 1 #define PETSC_HAVE_MKL_SPARSE 1 #define PETSC_HAVE_MKL_SPARSE_OPTIMIZE 1 #define PETSC_HAVE_MKL_SPARSE_SP2M_FEATURE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30400002 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_LARGE_COUNT 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_POSIX_MEMALIGN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/home/zhangsijie1995/Documents/Package/petsc-3.18.3/arch-linux-c-debug/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MKL_SPBLAS_DEPRECATED 1 #define PETSC_MPICC_SHOW "gcc -II_MPI_SUBSTITUTE_INSTALLDIR/include -LI_MPI_SUBSTITUTE_INSTALLDIR/lib/release -LI_MPI_SUBSTITUTE_INSTALLDIR/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib/release -Xlinker -rpath -Xlinker I_MPI_SUBSTITUTE_INSTALLDIR/lib -lmpifort -lmpi -lrt -lpthread -Wl,-z,now -Wl,-z,relro -Wl,-z,noexecstack -Xlinker --enable-new-dtags -ldl" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_DMLANDAU_2D 1 #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** arch-linux-c-debug/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** arch-linux-c-debug/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_BLASLAPACK_VERSION_MAJOR 20230000 #define PETSC_PKG_BLASLAPACK_VERSION_MINOR 0 #define PETSC_PKG_BLASLAPACK_VERSION_SUBMINOR 0 #define PETSC_PKG_BLASLAPACK_VERSION_ PETSC_PKG_BLASLAPACK_VERSION_EQ #define PETSC_PKG_BLASLAPACK_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_BLASLAPACK_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_BLASLAPACK_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_BLASLAPACK_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_BLASLAPACK_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_BLASLAPACK_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_BLASLAPACK_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_BLASLAPACK_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_BLASLAPACK_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_BLASLAPACK_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_BLASLAPACK_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_BLASLAPACK_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_BLASLAPACK_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_BLASLAPACK_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_BLASLAPACK_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_BLASLAPACK_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_BLASLAPACK_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif Attempting to save configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash Saved configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: Build : Set default architecture to arch-linux-c-debug in lib/petsc/conf/petscvariables File creation : Created arch-linux-c-debug/lib/petsc/conf/reconfigure-arch-linux-c-debug.py for automatic reconfiguration Framework: RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header arch-linux-c-debug/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-linux-c-debug/lib/petsc/conf/petscrules File creation : Created configure header arch-linux-c-debug/include/petscconf.h File creation : Created C specific configure header arch-linux-c-debug/include/petscfix.h File creation : Created configure pkg header arch-linux-c-debug/include/petscpkg_version.h Compilers: C Compiler: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 Version: gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 C++ Compiler: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -fPIC Version: g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Fortran Compiler: /opt/intel/oneapi/mpi/2021.8.0/bin/mpif90 -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 Version: GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 Linkers: Shared linker: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 Dynamic linker: /opt/intel/oneapi/mpi/2021.8.0/bin/mpicc -shared -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -g3 -O0 Libraries linked against: -lquadmath -lstdc++ -ldl BlasLapack: Intel MKL Version: 20230000 Includes: -I/opt/intel/oneapi/mkl/2023.0.0/include Libraries: -Wl,-rpath,/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -L/opt/intel/oneapi/mkl/2023.0.0/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread uses 4 byte integers MPI: Version: 3 Includes: -I/opt/intel/oneapi/mpi/2021.8.0/include mpiexec: /opt/intel/oneapi/mpi/2021.8.0/bin/mpiexec Implementation: mpich3 I_MPI_NUMVERSION: 20210800300 MPICH_NUMVERSION: 30400002 pthread: cmake: Version: 3.22.1 Executable: /usr/bin/cmake python: Executable: /usr/bin/python3 regex: mkl_sparse: mkl_sparse_optimize: PETSc: Language used to compile PETSc: C PETSC_ARCH: arch-linux-c-debug PETSC_DIR: /home/zhangsijie1995/Documents/Package/petsc-3.18.3 Prefix: Scalar type: real Precision: double Support for __float128 Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 16 bytes Using GNU make: /usr/bin/gmake xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/home/zhangsijie1995/Documents/Package/petsc-3.18.3 PETSC_ARCH=arch-linux-c-debug all xxx=========================================================================xxx ================================================================================ Finishing configure run at Wed, 11 Jan 2023 18:45:03 -0500 ================================================================================