February 2009 - Cels-editorial - mailman3.cels.anl.gov

Fwd: New article uploaded
by Cheryl Zidel 24 Feb '09

24 Feb '09

fyi Begin forwarded message: > From: Rick Stevens <stevens(a)anl.gov> > Date: February 23, 2009 5:21:25 PM CST > To: Scirevconsultant <scirevconsultant(a)iop.org> > Cc: Scidacreview <scidacreview(a)iop.org> > Subject: New article uploaded > > Dear SciDAC Review editorial board: > > I have uploaded the article called "Microbial Ecology and > Metagenomics: Gaining New Insights into Microbial Communities." It > is in the folder Metagenomics - Edwards in my folder. > > -Rick

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New article uploaded
by Rick Stevens 23 Feb '09

23 Feb '09

Dear SciDAC Review editorial board: I have uploaded the article called "Microbial Ecology and Metagenomics: Gaining New Insights into Microbial Communities." It is in the folder Metagenomics - Edwards in my folder. -Rick

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Re: update on the Metagenomics Paper
by Cheryl Zidel 23 Feb '09

23 Feb '09

Mary sent a ping earlier - I responded that it was in your mailbox waiting for you to ok it. We took Ray's suggestions, and fixed those. We got another reviewer not from the board to also look at it, and those comments were in the message. The message w/the same subject line as this one but from ~2p.m., is asking if you are ok /w the article now, whether your concerns had been addressed and I could upload it. Thanks Cheryl On Feb 23, 2009, at 3:08 PM, Rick Stevens wrote: > Can I get an update on the Metagenomics Paper?

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Fwd: SciDAC Review
by Cheryl Zidel 23 Feb '09

23 Feb '09

Fyi - some suggestions/discussion points for your meeting. Begin forwarded message: > From: Gail Pieper <pieper(a)mcs.anl.gov> > Date: February 23, 2009 1:21:31 PM CST > To: Cheryl Zidel <zidel(a)mcs.anl.gov> > Cc: Gail Pieper <pieper(a)mcs.anl.gov> > Subject: Re: SciDAC Review > > Thanks for the update, Cheryl. > > > I don't think we should revisit he HPCS languages from our side. > There was an article on it in the 2008 conference proceedings, so if > this is to e a topic, perhaps Barrett et al. at Oak Ridge should > handle this. We are no longer involved. > > To avoid a last-minute crunch, we need the board to generate ideas > NOW for Issue 13 and even 14. > > What about something on alternative fuels and the study of large > eddy simulation? (Chen et al, Sandia) > > Ray had an interesting point about the INCITE projects not > addressing the type of machine we expect with the Q and beyond. > Perhaps he could write a shorter article -- without getting the DOE > INCITE people annoyed? > > What about automatic differentiation technology and high-performance > computing (perhaps focusing on uncertainty quantification?) > > I understand Stanford is putting a Plan 9 distributed OS on the Blue > Gene. Anything here -- or perhaps an interview? or a news update? > > I'd like to see a list -- with appropriate names -- of 10, so these > can be put in the queue. > Gail > > > > > > Gail > On Feb 17, 2009, at 11:50 AM, Cheryl Zidel wrote: > >> Dear all, >> >> Here is an update on what we have, and what we need to start >> working on. >> >> We have the Metagenomics article - Rob Edwards - the final version >> has been sent to this group for review. - waiting for internal >> response >> >> The next items are taken from Mary's notes from the October meeting: >> >> For issue 13 which is what should have been submitted 2/15 we have: >> Rob's article >> >> For issue 14: >> The Epidemology - VT article was moved by IOP to issue 13 - this >> was complete and submitted on 2/10 - I have had a couple of >> exchanges w/Eve on this so IOP is working this. >> HW - testalem - quote from Steven Chiu?? (Rick) >> >> For Issue 15: >> the list is pretty sparse, but we have no items >> >> For Issue 16: >> HW - Power 7 (Rick) >> >> Pending >> ANL articles in queue >> Programmimg models for Roadrunner >> HPCS languages - Fortress/X10/Chapel (this was on hold, but we >> should probably revisit) >> Non-Medical Tomography,3D scans of dinosaurs, TX >> Predicting/Testing protein structure - David Baker >> NEW - Data Center article - Microsoft/Amazon - Dan Reed, ??? >> NEW - past success and future direction - MPI and multithreading >> >> Other ideas >> HW - Power 7/Intel >> HW - BG/Q >> Interview with Dan Reed, Microsoft >> >> IDEAS >> Focus - R&D 100 awards - ideal in terms of communicating impact >> ACTION - Prepare list of R&D 100 Awards for ASCR wins (MS) >> >> I don't have any information on the Pending items, except what is >> above, so if you have contacts for trying to get them going, please >> let me know. >> >> At the present time, we have only the Rob Edwards article in our >> queue, so we probably need to get some of these other items started. >> >> Your assistance/comments appreciated. >> >> thanks >> Cheryl >> >> >

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SciDAC Review
by Cheryl Zidel 17 Feb '09

17 Feb '09

Dear all, Here is an update on what we have, and what we need to start working on. We have the Metagenomics article - Rob Edwards - the final version has been sent to this group for review. - waiting for internal response The next items are taken from Mary's notes from the October meeting: For issue 13 which is what should have been submitted 2/15 we have: Rob's article For issue 14: The Epidemology - VT article was moved by IOP to issue 13 - this was complete and submitted on 2/10 - I have had a couple of exchanges w/ Eve on this so IOP is working this. HW - testalem - quote from Steven Chiu?? (Rick) For Issue 15: the list is pretty sparse, but we have no items For Issue 16: HW - Power 7 (Rick) Pending ANL articles in queue Programmimg models for Roadrunner HPCS languages - Fortress/X10/Chapel (this was on hold, but we should probably revisit) Non-Medical Tomography,3D scans of dinosaurs, TX Predicting/Testing protein structure - David Baker NEW - Data Center article - Microsoft/Amazon - Dan Reed, ??? NEW - past success and future direction - MPI and multithreading Other ideas HW - Power 7/Intel HW - BG/Q Interview with Dan Reed, Microsoft IDEAS Focus - R&D 100 awards - ideal in terms of communicating impact ACTION - Prepare list of R&D 100 Awards for ASCR wins (MS) I don't have any information on the Pending items, except what is above, so if you have contacts for trying to get them going, please let me know. At the present time, we have only the Rob Edwards article in our queue, so we probably need to get some of these other items started. Your assistance/comments appreciated. thanks Cheryl

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Re: Edwards scidac article
by Cheryl Zidel 17 Feb '09

17 Feb '09

Just a reminder for someone to take a look at this please!! Thanks Cheryl On Feb 3, 2009, at 3:58 PM, Gail Pieper wrote: > > I put it in > www.mcs.anl.gov/~pieper/Edwards-scidac08.tar. I cannot send it by > mail because it is too large. > Gail >

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Uploaded the article from Virginia Tech
by Cheryl Zidel 10 Feb '09

10 Feb '09

Dear all, I have just uploaded the Pandemic Planning article from Virginia Tech into Rick's folder in a folder called "VirginiaTech-Pandemic Planning." This is the replacement article to be included in issue 12 I believe. Thanks Cheryl Zidel

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Article has been uploaded
by Cheryl Zidel 04 Feb '09

04 Feb '09

Dear all, I have uploaded the updated article " Visualizing Science: The OptIPuter Project" onto the docushare site. The article is in a folder called "Updated DeFanti Article" inside Rick's folder. If you need something more, please do not hesitate to contact me. thanks Cheryl

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Fwd: new paper for SciDAC Review
by Cheryl Zidel 02 Feb '09

02 Feb '09

Just checking, as I have seen no responses on this one. Thanks Cheryl Begin forwarded message: > From: Gail Pieper <pieper(a)mcs.anl.gov> > Date: January 8, 2009 12:40:37 PM CST > To: cls-editorial(a)cls.anl.gov > Subject: new paper for SciDAC Review > > > In www.mcs.anl.gov/~pieper/marathe09.tar is a new paper for the > SciDAC Review. Please let me know if you wish any changes. If the > paper is ok, please let me know when it will appear, so I can tell > the author. > Gail >

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