Wow. 1.2.1p1 is ancient. It was used by dinosaurs and such when they still roamed the earth. I don’t use CentOS, but don’t the rpm’s from this page work? http://www.mpich.org/downloads/ If not, then source compile is always possible. :-) It’s an open-source project. —- Pavan On Nov 6, 2013, at 6:56 PM, bharat gupta <[email protected]> wrote:
Okay.. Thanks a lot for your time and help..
On Thu, Nov 7, 2013 at 9:54 AM, Ricardo Román Brenes <[email protected]> wrote: You have to either remove the old rpm and compile a new version or remove the old version and create an rpm from the source. Maybe fedora or suse have a newer version in their repos but I havent checked
On Nov 6, 2013 6:48 PM, "bharat gupta" <[email protected]> wrote: How can that be done in CentOS 6.0, I used the command yum search mpich and installed the one that it showed ...
On Thu, Nov 7, 2013 at 9:47 AM, Ricardo Román Brenes <[email protected]> wrote: Still, try to update to a new mpich asap! :-)
On Nov 6, 2013 6:45 PM, "bharat gupta" <[email protected]> wrote: Thanks for the command. After issuing mpdboot and making file mdp.conf with line secretword=<> in /etc folder solved the problem..
Thanks a lot
On Thu, Nov 7, 2013 at 9:43 AM, bharat gupta <[email protected]> wrote: I didn't use any of these command , I issued the command 'mpirun -np 24 mdrun -v -deffnm mdrun' for running the gromacs' and after using this command I got those errors
On Thu, Nov 7, 2013 at 9:42 AM, Ricardo Román Brenes <[email protected]> wrote: Did you start mpd either with mpd or mpdboot?
On Nov 6, 2013 6:39 PM, "Ricardo Román Brenes" <[email protected]> wrote: He has to. Thats an older mpich than mine! :-P
On Nov 6, 2013 6:34 PM, "Pavan Balaji" <[email protected]> wrote:
Looks like I’m late to this email chain.
Please don’t use mpd. mpd has been deprecated for many releases of mpich now. You might be using a very old version of mpich.
—- Pavan
On Nov 6, 2013, at 6:26 PM, bharat gupta <[email protected]> wrote:
DO I need to add some command in mpd.hosts file
On Thu, Nov 7, 2013 at 9:22 AM, bharat gupta <[email protected]> wrote: I don't know much about mpi , as I am using gromacs which was complied with mpi option. , But I read somewhere that
" If a file named .mpd.conf is available in the user's home directory, only the user can have read and write privileges. The file must minimally contain a line with secretword=<secretword>. If you want to run MPD as root, create the mpd.conf file in the /etc directory instead of .mpd.conf in the root's home directory to run mpd as root. Avoid starting the MPD ring under the root account." Here'e the link http://software.intel.com/sites/products/documentation/hpc/ics/impi/41/lin/R...
And after using chmod 700 , I still get the same error, but when I create a file mpd.conf in /etc I get the and added the secretword=<secretword> line in the file and run the same command, I get this error:-
root@localhost INGT]# mpirun -np 24 mdrun -v -deffnm mdrun mpdroot: perror msg: No such file or directory mpdroot: cannot connect to local mpd at: /tmp/mpd2.console_root probable cause: no mpd daemon on this machine possible cause: unix socket /tmp/mpd2.console_root has been removed
mpiexec_localhost.localdomain (__init__ 1208): forked process failed; status=255
On Thu, Nov 7, 2013 at 9:11 AM, Ricardo Román Brenes <[email protected]> wrote: Try using chmod 700. Can you run any other mpi example? Like cpi.c
On Nov 6, 2013 6:08 PM, "bharat gupta" <[email protected]> wrote: It have changed the file permission (rw) for root , ls -l mpd.hosts gives the output -rw-r--r--, 1 root root
On Thu, Nov 7, 2013 at 9:02 AM, Ricardo Román Brenes <[email protected]> wrote: With rwx permission just for root?
On Nov 6, 2013 6:00 PM, "bharat gupta" <[email protected]> wrote: I have created the file mpd.hosts in /etc folder in the root , but still it shows the same error ... /usr/bin/mpdroot: open failed for root's mpd conf filempiexec_localhost.localdomain (__init__ 1208): forked process failed; status=255
On Thu, Nov 7, 2013 at 8:45 AM, Ricardo Román Brenes <[email protected]> wrote: You need to create a mpd.hosts in /etc if you want to run mpd as root
On Nov 6, 2013 5:41 PM, "bharat gupta" <[email protected]> wrote: Hi,
I am getting the following error while using the command -
[root@localhost INGT]# mpirun -np 24 mdrun_mpi -v -deffnm npt
Error -
/usr/bin/mpdroot: open failed for root's mpd conf filempiexec_localhost.localdomain (__init__ 1208): forked process failed; status=255
I complied gromacs using - ./configure --enable-shared --enable-mpi. I have installed the mpich package , this is what I get when I check for mpirun and mpiexec -
[root@localhost /]# which mpirun /usr/bin/mpirun [root@localhost /]# which mpiexec /usr/bin/mpiexec
What could be the problem here ??
Thanks -------- Bharat
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Bharat Ph.D. Candidate Biomolecular Engineering Laboratory Pusan National University South Korea Mobile no. - 010-5818-3680
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Bharat Ph.D. Candidate Biomolecular Engineering Laboratory Pusan National University South Korea Mobile no. - 010-5818-3680
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Bharat Ph.D. Candidate Biomolecular Engineering Laboratory Pusan National University South Korea Mobile no. - 010-5818-3680
-- Bharat Ph.D. Candidate Biomolecular Engineering Laboratory Pusan National University South Korea Mobile no. - 010-5818-3680
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Pavan Balaji http://www.mcs.anl.gov/~balaji
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Bharat Ph.D. Candidate Biomolecular Engineering Laboratory Pusan National University South Korea Mobile no. - 010-5818-3680
-- Bharat Ph.D. Candidate Biomolecular Engineering Laboratory Pusan National University South Korea Mobile no. - 010-5818-3680
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Bharat Ph.D. Candidate Biomolecular Engineering Laboratory Pusan National University South Korea Mobile no. - 010-5818-3680
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Bharat Ph.D. Candidate Biomolecular Engineering Laboratory Pusan National University South Korea Mobile no. - 010-5818-3680
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Pavan Balaji http://www.mcs.anl.gov/~balaji