On Mon, Feb 16, 2015 at 6:23 AM, Marcin Zalewski <[email protected]> wrote:
Thanks for your answer Jeff.
On Mon, Feb 16, 2015 at 1:42 AM, Jeff Hammond <[email protected]> wrote:
If you are going to suballocate from a slab yourself, you can handle alignment yourself easy enough, no? Do I not understand what you mean here. And what sort of alignment do you want? Are you trying to align to 32/64 bytes because of AVX or some other x86 feature on Cray XC30 or do you want page alignment?
We have an implementation of a global heap using a custom memory allocator that depends on the heap being aligned to the maximum size of a block, which we want to be 32 bits where possible. We are able to achieve this with mmap by trying to allocate at addresses that are right for our heap. So, trying to allocate random memory and align to 32 bits may be difficult.
I would recommend posix_memalign and then let the CrayMPI registration cache do the rest. Best, Jeff
But what do you really want to achieve? While it is usually beneficial to use pre-registered buffers on RDMA networks, good MPI implementations have a page-registration cache. If, as you say, you are suballocating from a slab, Cray MPI should have the backing pages in the registration cache after you use them as MPI buffers.
That's true, I did not think of registration cache. As you say below, if I use huge pages for our heap, there should not be a problem with the whole heap being cached. So probably the complexity of dealing with MPI_Alloc_mem is not worth it at all.
You can maximize the efficiency of the page registration cache by using large pages. Search for intro_hugepages using 'man' or on the Internet to learn the specifics of this. I suspect that using large pages will induce much of the benefit you hoped to achieve with an explicitly-registering MPI_Alloc_mem.
If you really want to max out RDMA on Cray networks, you need to use DMAPP. I have some simple examples and pointers to docs here: https://github.com/jeffhammond/HPCInfo/tree/master/dmapp. I have more examples other places that I'll migrate to that location if requested.
If you're interested in portability, MPI-3 RMA is a good abstraction for RDMA networks. Some implementations do a better job than others at exposing this relationship. Cray MPI has a DMAPP back-end for RMA now, although it is not active by default. You could also try Torsten Hoefler's foMPI [http://spcl.inf.ethz.ch/Research/Parallel_Programming/foMPI/].
Best,
Jeff
On Sat, Feb 14, 2015 at 2:37 PM, Marcin Zalewski <[email protected]> wrote:
I am using Cray MPT, and I would like to allocate a large region of memory from which, in turn, I will allocate buffers to be used with MPI. I am wondering if there is any benefit from allocating that heap with MPI_Alloc_mem. I would hope that it could be pre-registered for RDMA, speeding things up. However, I need this memory to have a specific alignment. Is there a general way in MPICH or maybe a specific way for MPT to request alignment with MPI_Alloc_mem?
Thanks, Marcin _______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Jeff Hammond [email protected] http://jeffhammond.github.io/ _______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Jeff Hammond [email protected] http://jeffhammond.github.io/ _______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss