Dear Jeff, I have compiled siesta with no problem. It is the Gen-Basis in the Utils that is making a mess for me. The mpif90 is working fine executing the code. Regards, ________________________________ From: Jeff Hammond <[email protected]> To: [email protected] Cc: Hana Milani <[email protected]> Sent: Monday, July 8, 2013 7:52 PM Subject: Re: [mpich-discuss] "undefined references" I built Siesta against MPICH a week or two ago, albeit on BGQ (https://wiki.alcf.anl.gov/parts/index.php/SIESTA), and had no issues. What is the result of "mpif90 -show"? I wonder if you are mixing MPI builds or otherwise have a problem with your F90 configuration. Jeff On Mon, Jul 8, 2013 at 9:33 AM, Pavan Balaji <[email protected]> wrote:
This doesn't look like an MPI error. Did you contact the authors of whatever package you are trying to compile?
-- Pavan
On 07/08/2013 08:25 AM, Hana Milani wrote:
Hello,
I have compiled a
code (siesta) by mpich2, blacs, lapack, blas and
scalapack. It works fine under grid computation. But when I want to "make" a utility, I receive the following errors:
[Home@localhost Gen-basis]$ make /usr/local/bin/mpif90 -o gen-basis \ alloc.o basis_types.o precision.o recipes.o parallel.o parsing.o xcmod.o basis_io.o chemical.o atm_transfer.o atm_types.o atmparams.o old_atmfuncs.o radial.o io.o paste.o flib_spline.o bessph.o m_filter.o basis_specs.o atom.o memoryinfo.o memory.o periodic_table.o pseudopotential.o pxf.o dot.o xc.o atom_options.o arw.o sys.o timer.o xml.o m_walltime.o gen-basis.o nag.o libfdf.a
/home/Home/Packages/scalapack-2.0.2/libscalapack.a
/home/Home/Packages/BLACS/LIB/blacsCinit_MPI-LINUX-0.a /home/Home/Packages/BLACS/LIB/blacsF77init_MPI-LINUX-0.a /home/Home/Packages/BLACS/LIB/blacs_MPI-LINUX-0.a /home/Home/Packages/lapack-3.4.2/liblapack.a /home/Home/Packages/BLAS/blas_LINUX.a alloc.o: In function `print_report':
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1705: undefined reference to `__mpi__r8_s_MOD_mpi_reduce_t'
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1707: undefined reference to `__mpi__r8_v_MOD_mpi_reduce_t'
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1711: undefined reference to `__mpi__integer_s_MOD_mpi_bcast_t'
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1723:
undefined reference to `__mpi__r8_s_MOD_mpi_recv_t'
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1718: undefined reference to `__mpi__r8_s_MOD_mpi_send_t' alloc.o: In function `__alloc_MOD_alloc_report':
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:318: undefined reference to `__mpi__integer_s_MOD_mpi_bcast_t'
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:319: undefined reference to `__mpi__integer_s_MOD_mpi_bcast_t'
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:320: undefined reference to `__mpi__character_s_MOD_mpi_bcast_t' xcmod.o: In function `__xcmod_MOD_setxc':
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:136:
undefined reference to `__mpi__integer_s_MOD_mpi_bcast_t' /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:138: undefined reference to `__mpi__character_v_MOD_mpi_bcast_t' /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:140: undefined reference to `__mpi__character_v_MOD_mpi_bcast_t' /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:142: undefined reference to `__mpi__r8_v_MOD_mpi_bcast_t' /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:144: undefined reference to `__mpi__r8_v_MOD_mpi_bcast_t' memory.o: In function `printmemory_':
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/memory.F:144:
undefined reference to `__mpi__integer_s_MOD_mpi_allreduce_t' /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/memory.F:167: undefined reference to `__mpi__integer_sv_MOD_mpi_gather_t' timer.o: In function `timer1_': /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/timer.F:117: undefined reference to `__mpi__r8_s_MOD_mpi_allreduce_t' /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/timer.F:164: undefined reference to `__mpi__r8_v_MOD_mpi_reduce_t' /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/timer.F:139: undefined reference to `__mpi__r8_v_MOD_mpi_reduce_t' collect2: error: ld returned 1 exit status make: *** [gen-basis] Error 1
I will be really grateful if you kindly help me to solve this problem.
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-- Pavan Balaji http://www.mcs.anl.gov/~balaji _______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- Jeff Hammond [email protected]