Hi Fereshteh <guess> The model probably comes with a Makefile, or a configuration script, where you can choose the compiler (which presumably you chose as F77 or FC=mpif90, which is a good choice, not gfortran, which is not so good a choice). It may also have a INCLUDE variable where you can add the location of your mpif.h file. Something like this: INCLUDE= [whatever is already there] -I/home/fkomijani/program_install/mpich-3.0.4/include Normally mpif90 is able to locate the mpif.h include file and all needed mpi libraries as well, which is a big advantage over the barebones compiler (gfortran), as Ken and Junchao said. However, I've seen makefiles and build scripts that go a long way to strip off or override that capability, by redefining the compiler to be the one underlying the mpif90 wrapper (i.e go back to gfortran in your case), which is not a very good idea but happens. It is hard to tell exactly what is going on not knowing the Makefile, configure script, or the model code. Unfortunately the COAWST model is not readily available to download and check, requires the developer permission. If you post the Makefile or configure script things may become a little clearer. </guess> My two cents, Gus Correa On Sep 13, 2014, at 10:23 AM, fereshteh komijani wrote:
After compiling my model (coawst) it gives me following error :
mod_parallel.f90:17: Error: Can't open included file 'mpif.h'
coaws's developer tell me :
*check your environment and see if the location of mpif.h is in your INCLUDE list*.
But I don't know what is its mean? Where and how I can do that? Does environment mean .bashrc?
On Sep 13, 2014, at 10:23 AM, fereshteh komijani wrote:
thanks so much for your attention i will check in again cheers fereshte
On Sat, Sep 13, 2014 at 6:30 PM, Junchao Zhang <[email protected]> wrote: As you can see, hello.f90 contains include 'mpif.h' and mpif90 found it and correctly compiled the code.
So, mpich installation is correct. You need to double check your code and compilation commands.
--Junchao Zhang
On Sat, Sep 13, 2014 at 8:41 AM, fereshteh komijani <[email protected]> wrote: i have created hello.F90 and after compiling, it gives
fkomijani@fk1:~/program_install/COAWST$ mpif90 -v -o hello hello.F90 mpif90 for MPICH version 3.0.4 Driving: gfortran -v -o hello hello.F90 -I/home/fkomijani/program_install/mpich-3.0.4/include -I/home/fkomijani/program_install/mpich-3.0.4/include -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5) COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc' '-mtune=generic' '-march=i686' /usr/lib/gcc/i686-linux-gnu/4.6/f951 hello.F90 -cpp=/tmp/ccgJjtSb.f90 -quiet -v -I /home/fkomijani/program_install/mpich-3.0.4/include -I /home/fkomijani/program_install/mpich-3.0.4/include -imultilib . -imultiarch i386-linux-gnu hello.F90 -quiet -dumpbase hello.F90 -mtune=generic -march=i686 -auxbase hello -version -fintrinsic-modules-path /usr/lib/gcc/i686-linux-gnu/4.6/finclude -o /tmp/ccV5Pu7p.s GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) version 4.6.3 (i686-linux-gnu) compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR version 3.1.0-p3, MPC version 0.9 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/4.6/../../../../i686-linux-gnu/include" ignoring duplicate directory "/home/fkomijani/program_install/mpich-3.0.4/include" #include "..." search starts here: #include <...> search starts here: /home/fkomijani/program_install/mpich-3.0.4/include /usr/lib/gcc/i686-linux-gnu/4.6/finclude /usr/lib/gcc/i686-linux-gnu/4.6/include /usr/local/include /usr/lib/gcc/i686-linux-gnu/4.6/include-fixed /usr/include/i386-linux-gnu /usr/include End of search list. GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) version 4.6.3 (i686-linux-gnu) compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR version 3.1.0-p3, MPC version 0.9 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc' '-mtune=generic' '-march=i686' as --32 -o /tmp/ccPO4WoE.o /tmp/ccV5Pu7p.s Reading specs from /usr/lib/gcc/i686-linux-gnu/4.6/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc' '-mtune=generic' '-march=i686' COMPILER_PATH=/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc' '-mtune=generic' '-march=i686' /usr/lib/gcc/i686-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_i386 --hash-style=gnu -dynamic-linker /lib/ld-linux.so.2 -z relro -o hello /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crt1.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbegin.o -L/home/fkomijani/program_install/mpich-3.0.4/lib -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. /tmp/ccPO4WoE.o -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/4.6/crtend.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o
On Sat, Sep 13, 2014 at 5:28 PM, Junchao Zhang <[email protected]> wrote: "gfortran: error: hello.F90: No such file or directory" You need to create hello.F90 as I said in the previous email.
"mpif90 -v -o hello hello.F90 ./coawst.bash" Also, do not add ./coawst.bash
--Junchao Zhang
On Sat, Sep 13, 2014 at 7:15 AM, fereshteh komijani <[email protected]> wrote:
fkomijani@fk1:~/program_install/COAWST$ mpif90 -v -o hello hello.F90 ./coawst.bash mpif90 for MPICH version 3.0.4 Driving: gfortran -v -o hello hello.F90 ./coawst.bash -I/home/fkomijani/program_install/mpich-3.0.4/include -I/home/fkomijani/program_install/mpich-3.0.4/include -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc gfortran: error: hello.F90: No such file or directory Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
On Sat, Sep 13, 2014 at 4:33 PM, Junchao Zhang <[email protected]> wrote: That is strange. Could you compile the following program with "mpif90 -v -o hello hello.F90" and paste the output?
! hello.F90 program main implicit none include 'mpif.h' integer :: ierr
call MPI_Init(ierr) call MPI_Finalize(ierr) end program
--Junchao Zhang
On Sat, Sep 13, 2014 at 6:24 AM, fereshteh komijani <[email protected]> wrote: sorry that is my fault, it is mpif.h
it seems that COAWST model is searching it, in -I/user/include directory not in /home/fkomijani/program_install/mpich-3.0.4/include. so how can i set mentined directory in system environment?
On Sat, Sep 13, 2014 at 3:45 PM, Junchao Zhang <[email protected]> wrote: The file name should be mpif.h, but not mpih.f.
On Sep 13, 2014 1:45 AM, "fereshteh komijani" <[email protected]> wrote: yes, /home/fkomijani/program_install/mpich-3.0.4/include contains mpih.f
On Sat, Sep 13, 2014 at 11:07 AM, Kenneth Raffenetti <[email protected]> wrote: If you 'ls /home/fkomijani/program_install/mpich-3.0.4/include' does it contain an mpif.h file? If not, your MPICH installation might be bad.
On 09/13/2014 03:24 PM, fereshteh komijani wrote: gfortran -I/home/fkomijani/program_install/mpich-3.0.4/include -I/home/fkomijani/program_install/mpich-3.0.4/include -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread
On Sat, Sep 13, 2014 at 10:52 AM, Kenneth Raffenetti <[email protected] <mailto:[email protected]>> wrote:
What is the output from 'mpif90 -show'?
On 09/13/2014 03:19 PM, fereshteh komijani wrote:
dear Kenneth Raffenetti i am using mpif90 compiler. if it is, why i have got that error?
On Sat, Sep 13, 2014 at 10:47 AM, Kenneth Raffenetti <[email protected] <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>>> wrote:
Are you using the mpif77 or mpif90 compiler wrappers to build your program? They will automatically add the location of mpif.h to your include path.
On 09/13/2014 02:56 PM, fereshteh komijani wrote:
Dear friends
recently I have installed mpich 3.0.4 in my system (Ubuntu).
After compiling my model (coawst) it gives me following error :
mod_parallel.f90:17: Error: Can't open included file 'mpif.h'
coaws's developer tell me :
*check your environment and see if the location of mpif.h is in your INCLUDE list*.
But I don't know what is its mean? Where and how I can do that? Does environment mean .bashrc?
many thanks for any reply
fereshteh
-- ***Angel*** *__*
___________________________________________________ discuss mailing list [email protected] <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>> To manage subscription options or unsubscribe: https://lists.mpich.org/____mailman/listinfo/discuss <https://lists.mpich.org/__mailman/listinfo/discuss> <https://lists.mpich.org/__mailman/listinfo/discuss <https://lists.mpich.org/mailman/listinfo/discuss>>
___________________________________________________ discuss mailing list [email protected] <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>> To manage subscription options or unsubscribe: https://lists.mpich.org/____mailman/listinfo/discuss <https://lists.mpich.org/__mailman/listinfo/discuss>
<https://lists.mpich.org/__mailman/listinfo/discuss <https://lists.mpich.org/mailman/listinfo/discuss>>
-- ***Angel*** *__*
_________________________________________________ discuss mailing list [email protected] <mailto:[email protected]> To manage subscription options or unsubscribe: https://lists.mpich.org/__mailman/listinfo/discuss <https://lists.mpich.org/mailman/listinfo/discuss>
_________________________________________________ discuss mailing list [email protected] <mailto:[email protected]> To manage subscription options or unsubscribe: https://lists.mpich.org/__mailman/listinfo/discuss <https://lists.mpich.org/mailman/listinfo/discuss>
-- ***Angel*** *__*
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- **Angel**
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- **Angel**
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- **Angel**
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- **Angel**
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
-- **Angel**
_______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss