Or a snapshot tarball: http://www.mpich.org/static/downloads/nightly/master/mpich/ On 08/11/2016 04:21 PM, Halim Amer wrote:
This should be related to the alignment problem reported before (http://lists.mpich.org/pipermail/discuss/2016-May/004764.html).
We plan to include a fix in the 3.2.x bug fix release series. Meanwhile, please try the repo version (git.mpich.org/mpich.git), which should not suffer from this problem.
--Halim www.mcs.anl.gov/~aamer
On 8/11/16 8:48 AM, Mark Davis wrote:
Hello, I'm running into a segfault when I run some relatively simple MPI programs. In this particular case, I'm running a small program in a loop that does MPI_Bcast, once per loop, within MPI_COMM_WORLD. The buffer consists of just 7 doubles. I'm running with 6 procs on a machine with 8 cores on OSX (Darwin - 15.6.0 Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64 x86_64). When I run the same program with a smaller number of procs, the error usually doesn't show up. My compiler (both for compiling the MPICH source as well as my application) is clang 3.8.1.
When I run the same program on linux, also with MPICH-3.2 (I believe the same exact source), compiled with gcc 5.3, I do not get this error. This seems to be something I get only with
gdb shows the following stack trace. I have a feeling that this has something to do with my toolchain and/or libraries on my system given that I never get this error on my other system (linux). However, it's possible that there's an application bug as well.
I'm running the MPICH-3.2 stable release; I haven't tried anything from the repository yet.
Does anyone have any ideas about what's going on here? I'm happy to provide more details.
Thank you, Mark
Program received signal SIGSEGV, Segmentation fault. MPID_Request_create () at src/mpid/ch3/src/ch3u_request.c:101 101 req->dev.ext_hdr_ptr = NULL; (gdb) bt full #0 MPID_Request_create () at src/mpid/ch3/src/ch3u_request.c:101 No locals. #1 0x00000001003ac4c9 in MPIDI_CH3U_Recvq_FDP_or_AEU (match=<optimized out>, foundp=0x7fff5fbfe2bc) at src/mpid/ch3/src/ch3u_recvq.c:830 proc_failure_bit_masked = <error reading variable proc_failure_bit_masked (Cannot access memory at address 0x1)> error_bit_masked = <error reading variable error_bit_masked (Cannot access memory at address 0x1)> prev_rreq = <optimized out> channel_matched = <optimized out> rreq = <optimized out> #2 0x00000001003d1ffe in MPIDI_CH3_PktHandler_EagerSend (vc=<optimized out>, pkt=0x1004b3fd8 <MPIU_DBG_MaxLevel>, buflen=0x7fff5fbfe440, rreqp=0x7fff5fbfe438) at src/mpid/ch3/src/ch3u_eager.c:629 mpi_errno = <error reading variable mpi_errno (Cannot access memory at address 0x0)> found = <error reading variable found (Cannot access memory at address 0xefefefefefefefef)> rreq = <optimized out> data_len = <optimized out> complete = <optimized out> #3 0x00000001003f6045 in MPID_nem_handle_pkt (vc=<optimized out>, buf=0x102ad07e0 "", buflen=<optimized out>) at src/mpid/ch3/channels/nemesis/src/ch3_progress.c:760 len = 140734799800192 mpi_errno = <optimized out> complete = <error reading variable complete (Cannot access memory at address 0x1)> rreq = <optimized out> #4 0x00000001003f4e41 in MPIDI_CH3I_Progress (progress_state=0x7fff5fbfe750, is_blocking=1) at src/mpid/ch3/channels/nemesis/src/ch3_progress.c:570 payload_len = 4299898840 cell_buf = <optimized out> rreq = <optimized out> vc = 0x102ad07e8 made_progress = <error reading variable made_progress (Cannot access memory at address 0x0)> mpi_errno = <optimized out> #5 0x000000010035386d in MPIC_Wait (request_ptr=<optimized out>, errflag=<optimized out>) at src/mpi/coll/helper_fns.c:225 progress_state = {ch = {completion_count = -1409286143}} mpi_errno = <error reading variable mpi_errno (Cannot access memory at address 0x0)> #6 0x0000000100353b10 in MPIC_Send (buf=0x100917c30, count=4299945096, datatype=-1581855963, dest=<optimized out>, tag=4975608, comm_ptr=0x1004b3fd8 <MPIU_DBG_MaxLevel>, errflag=<optimized out>) at src/mpi/coll/helper_fns.c:302 mpi_errno = <optimized out> request_ptr = 0x1004bf7e0 <MPID_Request_direct+1760> #7 0x0000000100246031 in MPIR_Bcast_binomial (buffer=<optimized out>, count=<optimized out>, datatype=<optimized out>, root=<optimized out>, comm_ptr=<optimized out>, errflag=<optimized out>) at src/mpi/coll/bcast.c:280 nbytes = <optimized out> mpi_errno_ret = <optimized out> mpi_errno = 0 comm_size = <optimized out> rank = 2 type_size = <optimized out> tmp_buf = 0x0 position = <optimized out> relative_rank = <optimized out> mask = <optimized out> src = <optimized out> status = <optimized out> recvd_size = <optimized out> dst = <optimized out> #8 0x00000001002455a3 in MPIR_SMP_Bcast (buffer=<optimized out>, count=<optimized out>, datatype=<optimized out>, root=<optimized out>, comm_ptr=<optimized out>, errflag=<optimized out>) at src/mpi/coll/bcast.c:1087 mpi_errno_ = <error reading variable mpi_errno_ (Cannot access memory at address 0x0)> mpi_errno = <optimized out> mpi_errno_ret = <optimized out> nbytes = <optimized out> type_size = <optimized out> status = <optimized out> recvd_size = <optimized out> #9 MPIR_Bcast_intra (buffer=0x100917c30, count=<optimized out>, datatype=<optimized out>, root=1, comm_ptr=<optimized out>, errflag=<optimized out>) at src/mpi/coll/bcast.c:1245 nbytes = <optimized out> mpi_errno_ret = <error reading variable mpi_errno_ret (Cannot access memory at address 0x0)> mpi_errno = <optimized out> type_size = <optimized out> comm_size = <optimized out> #10 0x000000010024751e in MPIR_Bcast (buffer=<optimized out>, count=<optimized out>, datatype=<optimized out>, root=<optimized out>, comm_ptr=0x0, errflag=<optimized out>) at src/mpi/coll/bcast.c:1475 mpi_errno = <optimized out> #11 MPIR_Bcast_impl (buffer=0x1004bf7e0 <MPID_Request_direct+1760>, count=-269488145, datatype=-16, root=0, comm_ptr=0x0, errflag=0x1004bf100 <MPID_Request_direct>) at src/mpi/coll/bcast.c:1451 mpi_errno = <optimized out> #12 0x00000001000f3c24 in MPI_Bcast (buffer=<optimized out>, count=7, datatype=1275069445, root=1, comm=<optimized out>) at src/mpi/coll/bcast.c:1585 errflag = 2885681152 mpi_errno = <optimized out> comm_ptr = <optimized out> #13 0x0000000100001df7 in run_test<int> (my_rank=2, num_ranks=<optimized out>, count=<optimized out>, root_rank=1, datatype=@0x7fff5fbfeaec: 1275069445, iterations=<optimized out>) at bcast_test.cpp:83 No locals. #14 0x00000001000019cd in main (argc=<optimized out>, argv=<optimized out>) at bcast_test.cpp:137 root_rank = <optimized out> count = <optimized out> iterations = <optimized out> my_rank = 4978656 num_errors = <optimized out> runtime_ns = <optimized out> stats = {<std::__1::__basic_string_common<true>> = {<No data fields>}, __r_ = {<std::__1::__libcpp_compressed_pair_imp<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::__rep, std::__1::allocator<char>, 2>> = {<std::__1::allocator<char>> = {<No data fields>}, __first_ = {{__l = {__cap_ = 17289301308300324847, __size_ = 17289301308300324847, __data_ = 0xefefefefefefefef <error: Cannot access memory at address 0xefefefefefefefef>} _______________________________________________ discuss mailing list [email protected] To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
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