Thank you for the hint! I finally got my job running on my own MPI build. Just out of curious: Actually, I searched this libmpiprofilesupport library before and discovered that it is specific to Spectrum MPI so I didn't go further. But MPICH just ran magically after I load Spectrum MPI and have the Spectrum MPI lib path in $LD_LIBRARY_PATH. Why does MPICH have to use Spectrum MPI's libraries? Thanks! Feimi On 9/19/2021 1:57 PM, Zhou, Hui wrote:
./step-17.release: error while loading shared libraries: libmpiprofilesupport.so.3: cannot open shared object file: No such file or directory
This is complaining about cannot finding a dynamic library (that is linked in your binary) on the compute node. Make sure the path to that library is in the LD_LIBRARY_PATH.
------------------------------------------------------------------------ *From:* Feimi Yu <[email protected]> *Sent:* Saturday, September 18, 2021 9:13 PM *To:* Zhou, Hui <[email protected]>; [email protected] <[email protected]> *Subject:* Re: [mpich-discuss] Installing MPICH on clusters
Hi Hui,
Thank you for the response! Here is the Slurm batch file I used to run a program with MPICH configured with Hydra:
/#!/bin/bash// //#SBATCH --job-name=5e-7// //#SBATCH --partition=el8// //#SBATCH --time 6:00:00// //#SBATCH --ntasks 40// //#SBATCH --nodes 1// //#SBATCH --gres=gpu:4// // //date// //export LD_LIBRARY_PATH=/gpfs/u/home/CFSI/CFSIfmyu/barn-shared/dcs-rh8/mpich-build/lib:$MPI_ROOT:$LD_LIBRARY_PATH// //srun --mpi=mpichmx hostname -s | sort -u > /tmp/hosts.$SLURM_JOB_ID// //awk "{ print \$0 \":40\"; }" /tmp/hosts.$SLURM_JOB_ID
/tmp/tmp.$SLURM_JOB_ID// //mv /tmp/tmp.$SLURM_JOB_ID ./hosts.$SLURM_JOB_ID// // ///gpfs/u/home/CFSI/CFSIfmyu/barn-shared/dcs-rh8/mpich-build/bin/mpiexec -f ./hosts.$SLURM_JOB_ID -np $SLURM_NPROCS ./step-17.release// // //date/
And the error message is:
./step-17.release: error while loading shared libraries: libmpiprofilesupport.so.3: cannot open shared object file: No such file or directory
I was not sure if this is related to a network problem because the clusters use Infiniband. Running "/sbin/ifconfig" gives ib0, ib1, ib2 and ib3. I tried the option "-iface ib0" and the error message became:
[mpiexec@dcs176] HYDU_sock_get_iface_ip (utils/sock/sock.c:451): unable to find interface ib0 [mpiexec@dcs176] HYDU_sock_create_and_listen_portstr (utils/sock/sock.c:496): unable to get network interface IP [mpiexec@dcs176] HYD_pmci_launch_procs (pm/pmiserv/pmiserv_pmci.c:79): unable to create PMI port [mpiexec@dcs176] main (ui/mpich/mpiexec.c:322): process manager returned error launching processes
Specifying ib1-ib3 gives similar results.
Thanks!
Feimi
On 9/17/21 7:57 PM, Zhou, Hui wrote:
Hi Feimi,
Hydra should be able to work with slurm. How are you launching the job and what is the failure message?
-- Hui Zhou ------------------------------------------------------------------------ *From:* Feimi Yu via discuss <[email protected]> <mailto:[email protected]> *Sent:* Friday, September 17, 2021 10:55 AM *To:* [email protected] <mailto:[email protected]> <[email protected]> <mailto:[email protected]> *Cc:* Feimi Yu <[email protected]> <mailto:[email protected]> *Subject:* [mpich-discuss] Installing MPICH on clusters
Hi,
I'm working on a supercomputer which only provides Spectrum MPI implementation in modules. Since our code does not perform well with Spectrum MPI I decided to install an MPICH build on our own partition (I'm not an administrator.) The supercomputer has a rhel8 system on ppc64le architecture with Slurm as the process manager. I tried several building options according to the user guide but could not run a job so I have a few questions. Here are things I tried:
1. Build with Hydra PM. I could not launch a job with Hydra at all.
2. Then I decided to use ``--with-pm=none`` option to build and use srun + ``mpiexec -f hostfile`` to launch my job. But what confuses me is the PMI setting:
srun --mpi=list gives following:
srun: mpi/mpichgm srun: mpi/mpichmx srun: mpi/none srun: mpi/mvapich srun: mpi/openmpi srun: mpi/pmi2 srun: mpi/lam srun: mpi/mpich1_p4 srun: mpi/mpich1_shmem
At first I tried use pmix since I found pmix libraries. But it didn't do the trick. It segfaults on PMPI_Init_thread(). The error message is:
/[dcs135:2312190] PMIX ERROR: NOT-FOUND in file client/pmix_client.c at line 562/
/Abort(1090831) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init_thread: Other MPI error, error stack:// //MPIR_Init_thread(159): // //MPID_Init(509).......: // //MPIR_pmi_init(92)....: PMIX_Init returned -46 // //[dcs135:2312190:0:2312190] Caught signal 11 (Segmentation fault: address not mapped to object at address (nil))// /
Then I switched to pmi2 but make keeps telling me undefined reference to PMI2 library. (actually I couldn't find the pmi2 libraries either.)
Then I used ``--with-pmi=slurm``, and it turned out that I couldn't locate the Slurm header files. I guess I don't have the permission to access them.
I was wondering if it is still possible for me to build a usable MPICH as a user? If yes, how can I do to have the PMI work?
Thanks!
Feimi