Re: [mpich-discuss] Communication issue with simple test?
Hi Thibaut, In order to help us isolate this problem, could you please try the following options: - Use MPICH 3.3rc instead of MPICH 3.3b1 - Use ch3:tcp instead of ch3:sock (tcp is used by default, so please just delete `--with-device=ch3:sock` when you configure) - Try `mpiexec -f path_to_hostfile -n 8 hostname` Best regards, Min On 2018/11/13 7:30, Appel, Thibaut via discuss wrote: Dear MPICH users, I'm having an issue with, apparently, communication between nodes of the local cluster we're using. To fix ideas, the cluster is made of 8 different nodes and it was set-up with now outdated versions of the Intel compilers and MPI libraries. I did an mpbboot/mpdringtest and it seems to work fine. Now, I would like to use my application code with MPICH 3.3 installed from PETSc and with gcc-8 installed from linuxbrew on the different nodes. I tested a simple Fortran program: program test use mpi use ISO_fortran_env, only: output_unit implicit none integer :: irank, nproc, ierr character(len=80) :: hostname call MPI_INIT(ierr) call MPI_COMM_SIZE(MPI_COMM_WORLD,nproc,ierr) call MPI_COMM_RANK(MPI_COMM_WORLD,irank,ierr) if (irank == 0) THEN WRITE(output_unit,'(1X,A,I3,A)') 'Started test program with', nproc, ' MPI processes' end if call MPI_BARRIER(MPI_COMM_WORLD,ierr) call HOSTNM(hostname,ierr) WRITE(output_unit,'(1X,A,I3,A)') 'I am processor #', irank, ' running on '//hostname call MPI_FINALIZE(ierr) end program test It works fine on the local host. But when I try to launch it on all the nodes with "mpiexec -f path_to_hostfile -n 8 path_to_my_program" I get: Started test program with 8 MPI processes Fatal error in PMPI_Barrier: Unknown error class, error stack: PMPI_Barrier(287)...........................: MPI_Barrier(MPI_COMM_WORLD) failed PMPI_Barrier(273)...........................: MPIR_Barrier_impl(173)......................: MPIR_Barrier_intra_auto(108)................: MPIR_Barrier_intra_recursive_doubling(47)...: MPIC_Sendrecv(347)..........................: MPIC_Wait(73)...............................: MPIDI_CH3i_Progress_wait(242)...............: an error occurred while handling an event returned by MPIDI_CH3I_Sock_Wait() MPIDI_CH3I_Progress_handle_sock_event(698)..: MPIDI_CH3_Sockconn_handle_connect_event(597): [ch3:sock] failed to connnect to remote process MPIDI_CH3I_Sock_post_connect_ifaddr(1774)...: unexpected operating system error (set=0,sock=5,errno=101:Network is unreachable) Note that when I comment the call to MPI_BARRIER, it works fine as well. Therefore, communication between nodes seems to be an issue. All the nodes see and have access to the same mpiexec/mpifort executables: I checked $PATH and 'which mpiexec'/'which mpifort'. Could you give me ways for an efficient diagnostic of what's possibly wrong? mpiexec --version gives HYDRA build details: Version: 3.3b1 Release Date: Mon Feb 5 10:16:15 CST 2018 CC: gcc-8 -fPIC -fstack-protector -O3 -march=native CXX: g++-8 -fstack-protector -O3 -march=native -fPIC F77: gfortran-8 -fPIC -ffree-line-length-0 -O3 -march=native F90: gfortran-8 -fPIC -ffree-line-length-0 -O3 -march=native Configure options: '--disable-option-checking' '--prefix=/home/petsc/icm_cplx' 'MAKE=/usr/bin/make' '--libdir=/home/petsc/icm_cplx/lib' 'CC=gcc-8' 'CFLAGS=-fPIC -fstack-protector -O3 -march=native -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++-8' 'CXXFLAGS=-fstack-protector -O3 -march=native -fPIC -O2' 'F77=gfortran-8' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 -march=native -O2' 'FC=gfortran-8' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 -march=native -O2' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' '--cache-file=/dev/null' '--srcdir=.' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/petsc/icm_cplx/externalpackages/mpich-3.3b1/src/mpl/include -I/home/petsc/icm_cplx/externalpackages/mpich-3.3b1/src/mpl/include -I/home/petsc/icm_cplx/externalpackages/mpich-3.3b1/src/openpa/src -I/home/petsc/icm_cplx/externalpackages/mpich-3.3b1/src/openpa/src -D_REENTRANT -I/home/petsc/icm_cplx/externalpackages/mpich-3.3b1/src/mpi/romio/include' 'MPLLIBNAME=mpl' Process Manager: pmi Launchers available: ssh rsh fork slurm ll lsf sge manual persist Topology libraries available: hwloc Resource management kernels available: user slurm ll lsf sge pbs cobalt Checkpointing libraries available: Demux engines available: poll select Thank you, Thibaut _______________________________________________ discuss mailing list [email protected]<mailto:[email protected]> To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss
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Si, Min