Hi, Sorry, we do not have a comprehensive list. The information is available from the individual databases though, see the Annotation sources page at: http://metagenomics.anl.gov/metagenomics.cgi?page=Sources and click on each database to get download information. Regards, Mark D'Souza -- for the MG-RAST team [email protected] http://metagenomics.anl.gov/ If you need to respond to this email please address it to the mailing-list [email protected] On Jul 19, 2011, at 2:53 PM, [email protected] wrote:
Hi, I am a doctoral student at San Diego State University. I have been using MG-RAST to look at a number of marine metagenomes. I was wondering if there is a way to access a complete list of possible functional matches, not just the enzymes or genes my metagenomes hit. Ideally, I would also like to know which functional genes fall into multiple pathways so that I can account for sequences being counted multiple times. I know some of this information is available in SEED but a complete list would be very helpful. Thanks for any help you can send my way, J. Matthew Haggerty