Hi Pengfei, Go to: http://metagenomics.nmpdr.org/metagenomics.cgi?page=MetagenomeSubsetDownload&dataset=SEED%3Aseed_genome_tax&evalue=0.01&bitscore=&align_len=&identity=&metagenome=4444724.3&get=%2FQ%3A%225%3A8n{%3A%27]%3A%27^%3A%27d%3A%27e%3Ahz%3Ahz&rank=0 This should download the file 'sequence_subset.txt' which is 22553841 bytes large, with all the 245943 results. The table does load now, but the download using the 'export table' button will give you only the first 10000 results -- as displayed in the table. Sorry about the ad hoc nature of this solution, we will make it easily accessible soon, let me know how it works for you. Regards, Mark ----- "Pengfei Song" <[email protected]> wrote:
From: "Pengfei Song" <[email protected]> To: [email protected], [email protected] Sent: Wednesday, January 27, 2010 4:35:11 PM GMT -06:00 US/Canada Central Subject: Re: MG-RAST job (4444724.3)
Thanks, Mark,
I'm looking forward to it. I'll check again on Friday! If it can not be solved anytime sooner though (may god forbidden), can you please update my data to a server?
Best, Pengfei
On 1/27/2010 5:33 PM, [email protected] wrote:
Hi,
I took a look into this, and the problem is with the data acquisition from the database. We are digging deeper into this and hope to have a solution for you in a few days. Sorry for the delay.
----- "Pengfei Song" <[email protected]> wrote:
From: "Pengfei Song" <[email protected]> To: [email protected] Cc: [email protected] Sent: Wednesday, January 27, 2010 9:42:01 AM GMT -06:00 US/Canada Central Subject: MG-RAST job (4444724.3)
Hello again!
Happy New Year.
I'm still trying (I've been trying since last December) to download the SEED bacteria blast data for my job ID 4444724.3, but I guess since the dataset is too big, the webpage kept crashing on me (I've tried many times on many days). Do you mind sending me the data via Email or giving me some suggestions on how to download this? I need the E value to be 1E-2.
Many many thanks!! Pengfei Song, Ph.D Harvard University