no , we will put the download functionality in the overview page showing a diagram of all steps performed. On May 31, 2011, at 4:50 PM, Mark D'Souza wrote:

OK, Will just pointed me at the '&sims=1' trick to get the extended download page. Is this feature going to be released to our users in 3.1?

Mark

On May 31, 2011, at 4:41 PM, Mark D'Souza wrote:

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Hi Travis, (or anyone else familiar with this operation)

Is it possible to get all read annotations for a job through the 3.1 workbench?

Thanks, Mark

On May 31, 2011, at 2:36 PM, Aaron Garoutte wrote:

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Hello MG-RAST Team

I put some assemblies through your pipeline. Now that I have the contigs annotated I would like to go back and map my raw reads to the contigs to get a better measure of abundance. To do this I need to know how each contig has been annotated. I found (under metagenome downloads) the gene clustering file. This lists the contigs that cluster together and has, what I assume is a group name like aa90_105. So my question is, this there a file I can download that links the clustered contigs (via the cluster name) to the subsystem annotation?

As always thanks for your help

Aaron

Andreas Wilke Argonne National Laboratory Mathematics and Computer Science Division Bldg. 240 , 4F8 9700 South Cass Avenue Argonne, IL 60439 (630) 252-3190 (phone) (630) 252-5986.(fax)