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November 2009

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[PATCH] Required syncronization in mhdf_parallel.c
by Jed Brown 16 Nov '09

16 Nov '09

This test creates a file in serial and then modifies it in parallel. Before this patch, there was nothing to stop rank 1 from trying to open the file before rank 0 is done creating it. Of course rank 1 cannot finish opening the file until rank 0 also calls H5Fopen(), but H5Fis_hdf5() will fail if the file does not exist or is not valid when rank 1 is checking. This patch inserts an MPI_Barrier() which forces the necessary syncronization, now the test always passes. --- parallel/mhdf_parallel.c | 7 ++++++- 1 files changed, 6 insertions(+), 1 deletions(-)

2 1

r3349 - MOAB/trunk/tools/iMesh
by kraftche＠cae.wisc.edu 16 Nov '09

16 Nov '09

Author: kraftche Date: 2009-11-16 08:28:20 -0600 (Mon, 16 Nov 2009) New Revision: 3349 Modified: MOAB/trunk/tools/iMesh/iMesh_MOAB.cpp Log: patch from Jed Brown: convert ITAPS format option string to MOAB format for write_file call Modified: MOAB/trunk/tools/iMesh/iMesh_MOAB.cpp =================================================================== --- MOAB/trunk/tools/iMesh/iMesh_MOAB.cpp 2009-11-16 14:27:49 UTC (rev 3348) +++ MOAB/trunk/tools/iMesh/iMesh_MOAB.cpp 2009-11-16 14:28:20 UTC (rev 3349) @@ -354,9 +354,10 @@ eatwhitespace(tmp_filename); eatwhitespace(tmp_options); - + std::string opts = ";"; opts += tmp_options; + MBEntityHandle set = ENTITY_HANDLE(handle); - MBErrorCode result = MBI->write_file(tmp_filename.c_str(), NULL, tmp_options.c_str(), + MBErrorCode result = MBI->write_file(tmp_filename.c_str(), NULL, opts.c_str(), &set, 1); if (MB_SUCCESS != result) {

1 0

r3348 - MOAB/trunk/parallel
by kraftche＠cae.wisc.edu 16 Nov '09

16 Nov '09

Author: kraftche Date: 2009-11-16 08:27:49 -0600 (Mon, 16 Nov 2009) New Revision: 3348 Modified: MOAB/trunk/parallel/mhdf_parallel.c Log: patch from Jed Brown: make sure root proc is done writing file before others try to read it Modified: MOAB/trunk/parallel/mhdf_parallel.c =================================================================== --- MOAB/trunk/parallel/mhdf_parallel.c 2009-11-16 14:24:17 UTC (rev 3347) +++ MOAB/trunk/parallel/mhdf_parallel.c 2009-11-16 14:27:49 UTC (rev 3348) @@ -268,7 +268,12 @@ if (RANK == 0) create_file(); - + + /* Wait for rank 0 to finish creating the file, otherwise rank 1 may find it to be invalid */ + rval = MPI_Barrier(MPI_COMM_WORLD); + if (rval) + return rval; + write_file_data(); MPI_Finalize();

1 0

r3347 - MOAB/trunk/tools/dagmc
by kraftche＠cae.wisc.edu 16 Nov '09

16 Nov '09

Author: kraftche Date: 2009-11-16 08:24:17 -0600 (Mon, 16 Nov 2009) New Revision: 3347 Modified: MOAB/trunk/tools/dagmc/cub2h5m.cc Log: fix build issue Modified: MOAB/trunk/tools/dagmc/cub2h5m.cc =================================================================== --- MOAB/trunk/tools/dagmc/cub2h5m.cc 2009-11-14 16:57:41 UTC (rev 3346) +++ MOAB/trunk/tools/dagmc/cub2h5m.cc 2009-11-16 14:24:17 UTC (rev 3347) @@ -124,7 +124,7 @@ result = my_ex_reader.load_file(update_name, 0, opts, NULL, 0 , 0); // convert the quads to tris - quads_to_tris( my_impl ); + quads_to_tris( my_impl, 0 ); result = my_impl->write_mesh( output_name ); assert(!result);

1 0

MOAB check for *AMD64* failed.
by Nightly Test 16 Nov '09

16 Nov '09

make check-recursive make[1]: Entering directory `/home/jason/moab/test/AMD64' Making check in mhdf make[2]: Entering directory `/home/jason/moab/test/AMD64/mhdf' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/home/jason/moab/test/AMD64/mhdf' Making check in . make[2]: Entering directory `/home/jason/moab/test/AMD64' make moab_test homxform_test scdseq_test tqdcfr test_adj seq_man_test geom_util_test xform_test obb_test vtk_test adaptive_kd_tree_tests bsp_tree_test file_options_test kd_tree_test var_len_test var_len_test_no_template tag_test mesh_set_test cub_file_test exodus_test gmsh_test nastran_test stl_test mbcn_test bsp_tree_poly_test kd_tree_tool kd_tree_time make[3]: Entering directory `/home/jason/moab/test/AMD64' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT MBTest.o -MD -MP -MF .deps/MBTest.Tpo -c -o MBTest.o ../src/MBTest.cpp mv -f .deps/MBTest.Tpo .deps/MBTest.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o moab_test MBTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o moab_test MBTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin MBTest.o: In function `mb_read_fail_test(MBInterface*)': /home/jason/moab/test/AMD64/../src/MBTest.cpp:6800: warning: the use of `tmpnam' is dangerous, better use `mkstemp' /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o homxform_test homxform_test-HomXform.o ./libMOAB.la -lm c++ -DTEST -Wall -pipe -g -Wall -pipe -g -o homxform_test homxform_test-HomXform.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o scdseq_test scdseq_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o scdseq_test scdseq_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -MT tqdcfr-Tqdcfr.o -MD -MP -MF .deps/tqdcfr-Tqdcfr.Tpo -c -o tqdcfr-Tqdcfr.o `test -f 'Tqdcfr.cpp' || echo '../src/'`Tqd! cfr.cpp mv -f .deps/tqdcfr-Tqdcfr.Tpo .deps/tqdcfr-Tqdcfr.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o tqdcfr tqdcfr-Tqdcfr.o ./libMOAB.la -lm c++ -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -o tqdcfr tqdcfr-Tqdcfr.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o test_adj test_adj.o ./libMOAB.la -lm c++ -Wall -pipe -g -o test_adj test_adj.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o seq_man_test TestTypeSequenceManager.o ./libMOAB.la -lm c++ -Wall -pipe -g -o seq_man_test TestTypeSequenceManager.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o geom_util_test GeomUtilTests.o ./libMOAB.la -lm c++ -Wall -pipe -g -o geom_util_test GeomUtilTests.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o xform_test xform_test-MBAffineXform.o ./libMOAB.la -lm c++ -DTEST -Wall -pipe -g -Wall -pipe -g -o xform_test xform_test-MBAffineXform.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_test OBBTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o obb_test OBBTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o vtk_test VtkTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o vtk_test VtkTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o ./libMOAB.la -lm c++ -Wall -pipe -g -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o bsp_tree_test bsp_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o bsp_tree_test bsp_tree_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[3]: `file_options_test' is up to date. /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_test kd_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_test kd_tree_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o var_len_test VarLenTagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o var_len_test VarLenTagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o var_len_test_no_template var_len_test_no_template-VarLenTagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o var_len_test_no_template var_len_test_no_template-VarLenTagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o tag_test TagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o tag_test TagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o mesh_set_test Test_MBMeshSet.o ./libMOAB.la -lm c++ -Wall -pipe -g -o mesh_set_test Test_MBMeshSet.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o cub_file_test cub_file_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o cub_file_test cub_file_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o exodus_test exodus_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o exodus_test exodus_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o gmsh_test gmsh_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o gmsh_test gmsh_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o nastran_test nastran_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o nastran_test nastran_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o stl_test stl_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o stl_test stl_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DSRCDIR=../src -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT mbcn_test-MBCN.o -MD -MP -MF .deps/mbcn_test-MBCN.Tpo -c -o mbcn_test-MBCN.o `test -f 'MBCN.cpp' || echo '../src/'`MBCN.cpp mv -f .deps/mbcn_test-MBCN.Tpo .deps/mbcn_test-MBCN.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -lm c++ -Wall -pipe -g -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o bsp_tree_poly_test bsp_tree_poly_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o bsp_tree_poly_test bsp_tree_poly_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_tool kd_tree_tool.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_tool kd_tree_tool.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_time kd_tree_time.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_time kd_tree_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[3]: Leaving directory `/home/jason/moab/test/AMD64' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/AMD64' Size of mConnMap = 10512 Size of mUpConnMap = 59904 Size of MBCN = 1 MB TEST PROGRAM: mb_adjacent_vertex_test: Success mb_adjacencies_test: Success mb_adjacencies_create_delete_test: Success mb_upward_adjacencies_test: Success mb_vertex_coordinate_test: Success mb_vertex_tag_test: Success mb_bar_connectivity_test: Success mb_tri_connectivity_test: Success mb_quad_connectivity_test: Success mb_tet_connectivity_test: Success mb_temporary_test: Success mb_hex_connectivity_test: Success mb_mesh_sets_set_test: Success mb_mesh_sets_list_test: Success mb_mesh_set_parent_child_test: Success mb_mesh_set_set_appends: Success mb_mesh_set_list_appends: Success mb_mesh_set_root_appends: Success mb_mesh_set_set_replace_test: Success mb_mesh_set_list_replace_test: Success mb_mesh_set_flag_test: Success mb_tags_test: Success mb_dense_tag_test: Success mb_sparse_tag_test: Success mb_write_mesh_test: Success mb_delete_mesh_test: Success mb_meshset_tracking_test: Success mb_higher_order_test: Success mb_bit_tags_test: Success mb_entity_conversion_test: Success mb_forced_adjacencies_test: Success mb_canon_number_test: Success mb_poly_test: Success mb_range_test: Success mb_range_erase_test: Success mb_topo_util_test: Success mb_split_test: Success mb_range_seq_intersect_test: Success mb_poly_adjacency_test: Success mb_memory_use_test: Success mb_skin_curve_test: Success mb_skin_curve_adj_test: Success mb_skin_surface_test: Success mb_skin_surface_adj_test: Success mb_skin_volume_test: Success mb_skin_volume_adj_test: Success mb_read_fail_test: /tmp/fileYYvZrp : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/fileYYvZrp : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/fileYYvZrp : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/fileYYvZrp : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' Success mb_merge_update_test: Success mb_merge_test: ---Starting Merge Tests--- ---Testing:"test/cell1.gen"--- Loaded test/cell1.gen ---Testing:"test/cell2.gen"--- Loaded test/cell2.gen num hexes = 28 fl = 68 rl = 0 nodes.size() = 72 ---Success--- coin_nodes.size() = 13 TIME: 1237.94 seconds. Success mb_stress_test: Beginning Stress Test . . . Reading elements Read 256000 entities in 12.08 seconds at 21192.1 elements per second. Transforming and copying elements Transformed and created 256000 entities in 107.87 seconds Creating meshset Created meshset with 512000 entities in 0 seconds Writing 512K element file . . . Wrote file with 512000 entities in 129.73 seconds Total time: 249.69 seconds. Success MB TEST SUMMARY: Number Tests: 50 Number Successful: 50 Number Failed: 0 PASS: moab_test All tests passed. PASS: homxform_test All tests passed. PASS: scdseq_test Usage: tqdcfr <cub_file_name> Success. Success. PASS: tqdcfr PASS: test_adj Running test_basic ... Running test_lower_bound ... Running test_upper_bound ... Running test_find ... Running test_get_entities ... Running test_insert_sequence_merge ... Running test_insert_sequence_nomerge ... Running test_remove_sequence ... Running test_replace_subsequence ... Running test_erase ... Running test_find_free_handle ... Running test_find_free_sequence ... Running test_is_free_sequence ... Running regression_svn1952 ... Running regression_svn1958 ... Running regression_svn1960 ... ALL TESTS PASSED PASS: seq_man_test Running test_box_plane_overlap ... Running test_box_linear_elem_overlap_tri ... Running test_box_linear_elem_overlap_tet ... Running test_box_linear_elem_overlap_hex ... Running test_box_tri_overlap ... Running test_box_tet_overlap ... Running test_box_hex_overlap ... Running test_ray_tri_intersect ... Running test_closest_location_on_tri ... Running test_closest_location_on_polygon ... Running test_segment_box_intersect ... Running test_closest_location_on_box ... PASS: geom_util_test PASS: xform_test PASS: obb_test Testing edge2... Testing edge3... Testing tri3... Testing tri6... Testing quad4... Testing quad8... Testing quad9... Testing polygon... Testing tet4... Testing tet10... Testing hex8... Testing hex20... Testing hex27... Testing wedge... Testing wedge15... Testing pyramid... Testing pyramid13... Testing structured_points_2d... Testing structured_grid_2d... Testing rectilinear_grid_2d... Testing structured_points_3d... Testing structured_grid_3d... Testing rectilinear_grid_3d... Testing scalar_attrib_1_bit... Testing scalar_attrib_1_uchar... Testing scalar_attrib_1_char... Testing scalar_attrib_1_ushort... Testing scalar_attrib_1_short... Testing scalar_attrib_1_uint... Testing scalar_attrib_1_int... Testing scalar_attrib_1_ulong... Testing scalar_attrib_1_long... Testing scalar_attrib_1_float... Testing scalar_attrib_1_double... Testing scalar_attrib_4_bit... Testing scalar_attrib_4_uchar... Testing scalar_attrib_4_char... Testing scalar_attrib_4_ushort... Testing scalar_attrib_4_short... Testing scalar_attrib_4_uint... Testing scalar_attrib_4_int... Testing scalar_attrib_4_ulong... Testing scalar_attrib_4_long... Testing scalar_attrib_4_float... Testing scalar_attrib_4_double... Testing vector_attrib_bit... Testing vector_attrib_uchar... Testing vector_attrib_char... Testing vector_attrib_ushort... Testing vector_attrib_short... Testing vector_attrib_uint... Testing vector_attrib_int... Testing vector_attrib_ulong... Testing vector_attrib_long... Testing vector_attrib_float... Testing vector_attrib_double... Testing tensor_attrib_uchar... Testing tensor_attrib_char... Testing tensor_attrib_ushort... Testing tensor_attrib_short... Testing tensor_attrib_uint... Testing tensor_attrib_int... Testing tensor_attrib_ulong... Testing tensor_attrib_long... Testing tensor_attrib_float... Testing tensor_attrib_double... Testing subset... 67 tests passed PASS: vtk_test Running leaf_iterator_test ... Running test_build_tree_bisect_triangles ... Running test_closest_triangle ... Running test_sphere_intersect_triangles ... Running test_ray_intersect_triangles ... Running test_tree_merge_nodes ... Running test_leaf_volume ... Running test_leaf_sibling ... Running test_leaf_intersects_plane ... Running test_leaf_intersects_ray ... PASS: adaptive_kd_tree_tests Running test_set_plane ... Running test_iterator ... Running test_box_iterator ... Running test_tree_create ... Running test_box_tree_create ... Running test_leaf_containing_point_bounded_tree ... Running test_leaf_containing_point_unbounded_tree ... Running test_merge_leaf ... Running test_box_iter_neighbors ... Running test_leaf_sibling ... Running test_leaf_volume_box ... Running test_leaf_volume_gen ... Running test_leaf_splits_intersects ... Running test_box_leaf_intersects_ray ... Running test_gen_leaf_intersects_ray ... Running test_leaf_polyhedron ... PASS: bsp_tree_test PASS: file_options_test PASS: kd_tree_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test_no_template Running test_create_tag ... Running test_invalid_tag_size ... Running test_get_set_sparse_int ... Running test_get_set_dense_int ... Running test_get_set_dense_double ... Running test_get_set_bit ... Running test_get_by_tag ... Running test_get_by_tag_value ... Running test_mesh_value ... Running test_get_pointers_sparse ... Running test_get_pointers_dense ... Running test_set_pointers_sparse ... Running test_set_pointers_dense ... Running test_get_entity_tags ... Running test_delete_sparse_tag ... Running test_delete_dense_tag ... Running test_delete_mesh_tag ... Running test_delete_sparse_data ... Running test_delete_dense_data ... Running test_delete_bit_data ... Running test_create_variable_length_tag ... Running test_get_set_variable_length_sparse ... Running test_get_set_variable_length_dense ... Running test_get_set_variable_length_mesh ... Running test_get_ents_with_default_value ... Running regression_one_entity_by_var_tag ... Running regression_tag_on_nonexistent_entity ... PASS: tag_test Running test_add_entities_ordered ... Running test_add_entities_set ... Running test_add_entities_ordered_tracking ... Running test_add_entities_set_tracking ... Running test_remove_entities_ordered ... Running test_remove_entities_set ... Running test_remove_entities_ordered_tracking ... Running test_remove_entities_set_tracking ... Running test_entities_by_type_ordered ... Running test_entities_by_type_set ... Running test_entities_by_dim_ordered ... Running test_entities_by_dim_set ... Running test_subtract_set_set ... Running test_subtract_set_ordered ... Running test_subtract_ordered_set ... Running test_subtract_ordered_ordered ... Running test_subtract_set_set_tracking ... Running test_subtract_set_ordered_tracking ... Running test_subtract_ordered_set_tracking ... Running test_subtract_ordered_ordered_tracking ... Running test_itersect_set_set ... Running test_itersect_set_ordered ... Running test_itersect_ordered_set ... Running test_itersect_ordered_ordered ... Running test_itersect_set_set_tracking ... Running test_itersect_set_ordered_tracking ... Running test_itersect_ordered_set_tracking ... Running test_itersect_ordered_ordered_tracking ... Running test_unite_set_set ... Running test_unite_set_ordered ... Running test_unite_ordered_set ... Running test_unite_ordered_ordered ... Running test_unite_set_set_tracking ... Running test_unite_set_ordered_tracking ... Running test_unite_ordered_set_tracking ... Running test_unite_ordered_ordered_tracking ... Running test_contains_entities_ordered ... Running test_contains_entities_set ... Running test_clear_ordered ... Running test_clear_set ... Running test_clear_ordered_tracking ... Running test_clear_set_tracking ... ALL TESTS PASSED PASS: mesh_set_test Running test_vertices ... Running test_edges ... Running test_quads ... Running test_hexes ... Running test_geometric_topology ... Running test_geometric_sets ... Running test_blocks ... Running test_side_sets ... Running test_node_sets ... Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... Running test_multiple_files ... PASS: cub_file_test Running test_types ... Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... Running test_read_tri6_side ... Running test_read_shell_side ... Running test_read_shell_edge ... Running test_read_hex20_side ... Running test_read_block_ids ... Running test_read_sideset_ids ... Running test_read_nodeset_ids ... PASS: exodus_test Running test_read_nodes ... Running test_read_quads ... Running test_read_material_set ... Running test_read_geom_set ... PASS: gmsh_test Running test_read_nodes ... Running test_read_tets ... Running test_read_prisms ... Running test_read_hexes ... Running test_read_material_set1 ... Running test_read_material_set2 ... PASS: nastran_test Running test_read_ascii ... Running test_write_ascii ... Running test_type_option ... Running test_detect_type ... Running test_endian_option ... Running test_big_endian ... Running test_little_endian ... Running test_detect_byte_order ... PASS: stl_test Running test_dimension_pair ... Running test_type_names ... Running test_dimension ... Running test_vertices_per_entity ... Running test_num_sub_entities ... Running test_sub_entity_type_vtx ... Running test_sub_entity_type_edge ... Running test_sub_entity_type_tri ... Running test_sub_entity_type_quad ... Running test_sub_entity_type_tet ... Running test_sub_entity_type_pyr ... Running test_sub_entity_type_pri ... Running test_sub_entity_type_knife ... Running test_sub_entity_type_hex ... Running test_sub_entity_indices_vtx ... Running test_sub_entity_indices_edge ... Running test_sub_entity_indices_tri ... Running test_sub_entity_indices_quad ... Running test_sub_entity_indices_tet ... Running test_sub_entity_indices_pyr ... Running test_sub_entity_indices_pri ... Running test_sub_entity_indices_hex ... Running test_side_number_tri ... Running test_side_number_quad ... Running test_side_number_tet ... Running test_side_number_pyr ... Running test_side_number_pri ... Running test_side_number_hex ... Running test_opposite_side_tri ... Running test_opposite_side_quad ... Running test_opposite_side_tet ... Running test_opposite_side_hex ... Running test_has_mid_nodes_edge ... Running test_has_mid_nodes_tri ... Running test_has_mid_nodes_quad ... Running test_has_mid_nodes_tet ... Running test_has_mid_nodes_pyr ... Running test_has_mid_nodes_pri ... Running test_has_mid_nodes_knife ... Running test_has_mid_nodes_hex ... Running test_sub_entity_nodes_tri_edges ... Running test_sub_entity_nodes_quad_edges ... Running test_sub_entity_nodes_tet_edges ... Running test_sub_entity_nodes_tet_faces ... Running test_sub_entity_nodes_pyr_edges ... Running test_sub_entity_nodes_pyr_faces ... Running test_sub_entity_nodes_pri_edges ... Running test_sub_entity_nodes_pri_faces ... Running test_sub_entity_nodes_kni_edges ... Running test_sub_entity_nodes_kni_faces ... Running test_sub_entity_nodes_hex_edges ... Running test_sub_entity_nodes_hex_faces ... Running test_ho_node_parent ... Running test_ho_node_index ... PASS: mbcn_test Running test_construct_from_hex ... Running test_cut_with_plane ... Running test_volume ... PASS: bsp_tree_poly_test =================== All 25 tests passed =================== make[3]: Leaving directory `/home/jason/moab/test/AMD64' make[2]: Leaving directory `/home/jason/moab/test/AMD64' Making check in test make[2]: Entering directory `/home/jason/moab/test/AMD64/test' Making check in dual make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual' make dual_test make[4]: Entering directory `/home/jason/moab/test/AMD64/test/dual' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o dual_test dual_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o dual_test dual_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/dual' Usage: dual_test <mesh_file_name> PASS: dual_test ================== All 1 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' Making check in h5file make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' make h5test h5legacy h5varlen h5sets_test h5regression h5partial make[4]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5test h5file_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5test h5file_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5legacy.o -MD -MP -MF .deps/h5legacy.Tpo -c -o h5legacy.o ../../../src/test/h5file/h5legacy.cpp mv -f .deps/h5legacy.Tpo .deps/h5legacy.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5legacy h5legacy.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5legacy h5legacy.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5varlen h5varlen.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5varlen h5varlen.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5sets_test.o -MD -MP -MF .deps/h5sets_test.Tpo -c -o h5sets_test.o ../../../src/test/h5file/h5sets_test.cpp ../../../src/test/h5file/h5sets_test.cpp: In function ‘void read_write_file(MBInterface&, MBInterface&, MBEntityHandle*)’: ../../../src/test/h5file/h5sets_test.cpp:17: warning: unused variable ‘file’ mv -f .deps/h5sets_test.Tpo .deps/h5sets_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5sets_test h5sets_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5sets_test h5sets_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5regression.o -MD -MP -MF .deps/h5regression.Tpo -c -o h5regression.o ../../../src/test/h5file/h5regression.cpp mv -f .deps/h5regression.Tpo .deps/h5regression.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5regression h5regression.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5regression h5regression.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5partial h5partial.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5partial h5partial.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' creating... writing... reading... comparing... success! writing... clearing db... reading... comparing... success! cleaning up... done. PASS: h5test Running test_moab_v3_poly_format ... PASS: h5legacy Running test_var_length_no_data ... Running test_var_length_data ... Running test_var_length_big_data ... Running test_var_length_opaque ... Running test_var_length_mesh_data ... Running test_var_length_default_data ... Running test_var_length_mesh_opaque ... Running test_var_length_default_opaque ... Running test_var_length_handle_tag ... Running test_var_length_data_big ... PASS: h5varlen Running test_ranged_set_with_holes ... Running test_file_set ... Running test_small_tree ... Created binary tree containing 32 nodes. PASS: h5sets_test Running test_write_invalid_elem ... PASS: h5regression Running test_read_empty_set ... Running test_read_non_existant_set ... Running test_read_one_set_nodes ... Running test_read_one_set_elems ... Running test_read_one_set_polyhedra ... Running test_read_set_sets ... Running test_read_two_sets_nodes ... Running test_read_two_sets_elems ... Running test_read_child_sets_only ... Running test_read_child_set_contents ... Running test_read_no_child_sets ... Running test_read_contained_sets_only ... Running test_read_contained_set_contents ... Running test_read_no_contained_sets ... Running test_read_containing_sets ... Running test_read_double_tag ... Running test_read_opaque_tag ... Running test_read_handle_tag ... Running test_var_len_tag ... Running test_read_adjacencies ... Running test_read_tagged_elems ... Running test_read_tagged_nodes ... Running test_read_sides ... Running test_read_ids ... Running test_read_partial_ids ... PASS: h5partial ================== All 6 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' Making check in obb make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb' make obb_test obb_time obb_tree_tool make[4]: Entering directory `/home/jason/moab/test/AMD64/test/obb' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/obb -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT obb_test.o -MD -MP -MF .deps/obb_test.Tpo -c -o obb_test.o ../../../src/test/obb/obb_test.cpp mv -f .deps/obb_test.Tpo .deps/obb_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_test obb_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_test obb_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_time obb_time.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_time obb_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_tree_tool obb_tree_tool.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_tree_tool obb_tree_tool.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/obb' MOAB 3.99 (Alpha) No file(s) specified. Using default file "../../../src/test/3k-tri-sphere.vtk" Using default file "../../../src/test/3k-tri-cube.h5m" ../../../src/test/3k-tri-sphere.vtk ------ Building tree from 2970 2D elements No errors detected. ../../../src/test/3k-tri-cube.h5m ------ Building tree from 6 surfaces Built tree from 6 surfaces (2934 elements) No errors detected. PASS: obb_test ================== All 1 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' Making check in perf make[3]: Entering directory `/home/jason/moab/test/AMD64/test/perf' make perf seqperf adj_time make[4]: Entering directory `/home/jason/moab/test/AMD64/test/perf' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o perf perf.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o perf perf.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o seqperf seqperf.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o seqperf seqperf.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o adj_time adj_time.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o adj_time adj_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[3]: Entering directory `/home/jason/moab/test/AMD64/test' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/test' make[2]: Leaving directory `/home/jason/moab/test/AMD64/test' Making check in tools make[2]: Entering directory `/home/jason/moab/test/AMD64/tools' Making check in iMesh make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make check-recursive make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Making check in . make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make testc_cbind make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' cc -DHAVE_CONFIG_H -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DSRCDIR=../../../src/tools/iMesh -I. -I../../../src/tools/iMesh -I../.. -I../../parallel -I../../../src -I../.. -I. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT testc_cbind.o -MD -MP -MF .deps/testc_cbind.Tpo -c -o testc_cbind.o ../../../src/tools/iMesh/testc_cbind.c ../../../src/tools/iMesh/testc_cbind.c: In function ‘all_adjacency_regression’: ../../../src/tools/iMesh/testc_cbind.c:2135: warning: assignment makes integer from pointer without a cast mv -f .deps/testc_cbind.Tpo .deps/testc_cbind.Po /bin/sh ../../libtool --tag=CC --mode=link cc -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o testc_cbind testc_cbind.o libiMesh.la ../../libMOAB.la -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lm -lgcc_s -lc -lgcc_s -lm cc -Wall -pipe -g -o testc_cbind testc_cbind.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libiMesh.a /home/jason/moab/test/AMD64/.libs/libMOAB.a ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lc -lgcc_s -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make check-TESTS make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Usage: ./testc_cbind <mesh_filename> No file specified. Defaulting to: ../../../src/tools/iMesh/brick.vtk TSTT TEST PROGRAM: load_mesh: Success topology_adjacency_test: Success entity_connectivity_test: Success vertex_coordinates_test: Success topology_dimension_test: Success entity_sets_test: Success vertex_tag_test: Success entityset_tag_test: Success mesh_tag_test: Success set_remove_contained_regression: Success all_adjacency_regression: Success TSTT TEST SUMMARY: Number Tests: 11 Number Successful: 11 Number Not Implemented: 0 Number Failed: 0 PASS: testc_cbind ================== All 1 tests passed ================== make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' Making check in mbperf make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/mbperf' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/mbperf' Making check in dagmc make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/dagmc' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/tools/dagmc -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -Wall -pipe -g -MT cub2h5m.o -MD -MP -MF .deps/cub2h5m.Tpo -c -o cub2h5m.o ../../../src/tools/dagmc/cub2h5m.cc ../../../src/tools/dagmc/quads_to_tris.hpp: In function ‘int main(int, char**)’: ../../../src/tools/dagmc/quads_to_tris.hpp:18: error: too few arguments to function ‘MBErrorCode quads_to_tris(MBInterface*, MBEntityHandle)’ ../../../src/tools/dagmc/cub2h5m.cc:127: error: at this point in file ../../../src/tools/dagmc/cub2h5m.cc:48: warning: unused variable ‘dist_tol’ ../../../src/tools/dagmc/cub2h5m.cc:48: warning: unused variable ‘len_tol’ ../../../src/tools/dagmc/cub2h5m.cc:49: warning: unused variable ‘norm_tol’ ../../../src/tools/dagmc/cub2h5m.cc:91: warning: unused variable ‘s’ make[3]: *** [cub2h5m.o] Error 1 make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/dagmc' make[2]: *** [check-recursive] Error 1 make[2]: Leaving directory `/home/jason/moab/test/AMD64/tools' make[1]: *** [check-recursive] Error 1 make[1]: Leaving directory `/home/jason/moab/test/AMD64' make: *** [check] Error 2

1 0

[PATCH] Munge iMesh_save options string for MOAB as in iMesh_load
by Jed Brown 15 Nov '09

15 Nov '09

--- tools/iMesh/iMesh_MOAB.cpp | 5 +++-- 1 files changed, 3 insertions(+), 2 deletions(-)

1 0

MOAB check for *AMD64* failed.
by Nightly Test 15 Nov '09

15 Nov '09

make check-recursive make[1]: Entering directory `/home/jason/moab/test/AMD64' Making check in mhdf make[2]: Entering directory `/home/jason/moab/test/AMD64/mhdf' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/home/jason/moab/test/AMD64/mhdf' Making check in . make[2]: Entering directory `/home/jason/moab/test/AMD64' make moab_test homxform_test scdseq_test tqdcfr test_adj seq_man_test geom_util_test xform_test obb_test vtk_test adaptive_kd_tree_tests bsp_tree_test file_options_test kd_tree_test var_len_test var_len_test_no_template tag_test mesh_set_test cub_file_test exodus_test gmsh_test nastran_test stl_test mbcn_test bsp_tree_poly_test kd_tree_tool kd_tree_time make[3]: Entering directory `/home/jason/moab/test/AMD64' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT MBTest.o -MD -MP -MF .deps/MBTest.Tpo -c -o MBTest.o ../src/MBTest.cpp mv -f .deps/MBTest.Tpo .deps/MBTest.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o moab_test MBTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o moab_test MBTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin MBTest.o: In function `mb_read_fail_test(MBInterface*)': /home/jason/moab/test/AMD64/../src/MBTest.cpp:6800: warning: the use of `tmpnam' is dangerous, better use `mkstemp' /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o homxform_test homxform_test-HomXform.o ./libMOAB.la -lm c++ -DTEST -Wall -pipe -g -Wall -pipe -g -o homxform_test homxform_test-HomXform.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o scdseq_test scdseq_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o scdseq_test scdseq_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -MT tqdcfr-Tqdcfr.o -MD -MP -MF .deps/tqdcfr-Tqdcfr.Tpo -c -o tqdcfr-Tqdcfr.o `test -f 'Tqdcfr.cpp' || echo '../src/'`Tqd! cfr.cpp mv -f .deps/tqdcfr-Tqdcfr.Tpo .deps/tqdcfr-Tqdcfr.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o tqdcfr tqdcfr-Tqdcfr.o ./libMOAB.la -lm c++ -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -o tqdcfr tqdcfr-Tqdcfr.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o test_adj test_adj.o ./libMOAB.la -lm c++ -Wall -pipe -g -o test_adj test_adj.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o seq_man_test TestTypeSequenceManager.o ./libMOAB.la -lm c++ -Wall -pipe -g -o seq_man_test TestTypeSequenceManager.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o geom_util_test GeomUtilTests.o ./libMOAB.la -lm c++ -Wall -pipe -g -o geom_util_test GeomUtilTests.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o xform_test xform_test-MBAffineXform.o ./libMOAB.la -lm c++ -DTEST -Wall -pipe -g -Wall -pipe -g -o xform_test xform_test-MBAffineXform.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_test OBBTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o obb_test OBBTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o vtk_test VtkTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o vtk_test VtkTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o ./libMOAB.la -lm c++ -Wall -pipe -g -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o bsp_tree_test bsp_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o bsp_tree_test bsp_tree_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[3]: `file_options_test' is up to date. /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_test kd_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_test kd_tree_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o var_len_test VarLenTagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o var_len_test VarLenTagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o var_len_test_no_template var_len_test_no_template-VarLenTagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o var_len_test_no_template var_len_test_no_template-VarLenTagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o tag_test TagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o tag_test TagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o mesh_set_test Test_MBMeshSet.o ./libMOAB.la -lm c++ -Wall -pipe -g -o mesh_set_test Test_MBMeshSet.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o cub_file_test cub_file_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o cub_file_test cub_file_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o exodus_test exodus_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o exodus_test exodus_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o gmsh_test gmsh_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o gmsh_test gmsh_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o nastran_test nastran_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o nastran_test nastran_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o stl_test stl_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o stl_test stl_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DSRCDIR=../src -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT mbcn_test-MBCN.o -MD -MP -MF .deps/mbcn_test-MBCN.Tpo -c -o mbcn_test-MBCN.o `test -f 'MBCN.cpp' || echo '../src/'`MBCN.cpp mv -f .deps/mbcn_test-MBCN.Tpo .deps/mbcn_test-MBCN.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -lm c++ -Wall -pipe -g -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o bsp_tree_poly_test bsp_tree_poly_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o bsp_tree_poly_test bsp_tree_poly_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_tool kd_tree_tool.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_tool kd_tree_tool.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_time kd_tree_time.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_time kd_tree_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[3]: Leaving directory `/home/jason/moab/test/AMD64' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/AMD64' Size of mConnMap = 10512 Size of mUpConnMap = 59904 Size of MBCN = 1 MB TEST PROGRAM: mb_adjacent_vertex_test: Success mb_adjacencies_test: Success mb_adjacencies_create_delete_test: Success mb_upward_adjacencies_test: Success mb_vertex_coordinate_test: Success mb_vertex_tag_test: Success mb_bar_connectivity_test: Success mb_tri_connectivity_test: Success mb_quad_connectivity_test: Success mb_tet_connectivity_test: Success mb_temporary_test: Success mb_hex_connectivity_test: Success mb_mesh_sets_set_test: Success mb_mesh_sets_list_test: Success mb_mesh_set_parent_child_test: Success mb_mesh_set_set_appends: Success mb_mesh_set_list_appends: Success mb_mesh_set_root_appends: Success mb_mesh_set_set_replace_test: Success mb_mesh_set_list_replace_test: Success mb_mesh_set_flag_test: Success mb_tags_test: Success mb_dense_tag_test: Success mb_sparse_tag_test: Success mb_write_mesh_test: Success mb_delete_mesh_test: Success mb_meshset_tracking_test: Success mb_higher_order_test: Success mb_bit_tags_test: Success mb_entity_conversion_test: Success mb_forced_adjacencies_test: Success mb_canon_number_test: Success mb_poly_test: Success mb_range_test: Success mb_range_erase_test: Success mb_topo_util_test: Success mb_split_test: Success mb_range_seq_intersect_test: Success mb_poly_adjacency_test: Success mb_memory_use_test: Success mb_skin_curve_test: Success mb_skin_curve_adj_test: Success mb_skin_surface_test: Success mb_skin_surface_adj_test: Success mb_skin_volume_test: Success mb_skin_volume_adj_test: Success mb_read_fail_test: /tmp/file8kit34 : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/file8kit34 : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/file8kit34 : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/file8kit34 : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' Success mb_merge_update_test: Success mb_merge_test: ---Starting Merge Tests--- ---Testing:"test/cell1.gen"--- Loaded test/cell1.gen ---Testing:"test/cell2.gen"--- Loaded test/cell2.gen num hexes = 28 fl = 68 rl = 0 nodes.size() = 72 ---Success--- coin_nodes.size() = 13 TIME: 1237.78 seconds. Success mb_stress_test: Beginning Stress Test . . . Reading elements Read 256000 entities in 12.19 seconds at 21000.8 elements per second. Transforming and copying elements Transformed and created 256000 entities in 106.88 seconds Creating meshset Created meshset with 512000 entities in 0 seconds Writing 512K element file . . . Wrote file with 512000 entities in 129.52 seconds Total time: 248.6 seconds. Success MB TEST SUMMARY: Number Tests: 50 Number Successful: 50 Number Failed: 0 PASS: moab_test All tests passed. PASS: homxform_test All tests passed. PASS: scdseq_test Usage: tqdcfr <cub_file_name> Success. Success. PASS: tqdcfr PASS: test_adj Running test_basic ... Running test_lower_bound ... Running test_upper_bound ... Running test_find ... Running test_get_entities ... Running test_insert_sequence_merge ... Running test_insert_sequence_nomerge ... Running test_remove_sequence ... Running test_replace_subsequence ... Running test_erase ... Running test_find_free_handle ... Running test_find_free_sequence ... Running test_is_free_sequence ... Running regression_svn1952 ... Running regression_svn1958 ... Running regression_svn1960 ... ALL TESTS PASSED PASS: seq_man_test Running test_box_plane_overlap ... Running test_box_linear_elem_overlap_tri ... Running test_box_linear_elem_overlap_tet ... Running test_box_linear_elem_overlap_hex ... Running test_box_tri_overlap ... Running test_box_tet_overlap ... Running test_box_hex_overlap ... Running test_ray_tri_intersect ... Running test_closest_location_on_tri ... Running test_closest_location_on_polygon ... Running test_segment_box_intersect ... Running test_closest_location_on_box ... PASS: geom_util_test PASS: xform_test PASS: obb_test Testing edge2... Testing edge3... Testing tri3... Testing tri6... Testing quad4... Testing quad8... Testing quad9... Testing polygon... Testing tet4... Testing tet10... Testing hex8... Testing hex20... Testing hex27... Testing wedge... Testing wedge15... Testing pyramid... Testing pyramid13... Testing structured_points_2d... Testing structured_grid_2d... Testing rectilinear_grid_2d... Testing structured_points_3d... Testing structured_grid_3d... Testing rectilinear_grid_3d... Testing scalar_attrib_1_bit... Testing scalar_attrib_1_uchar... Testing scalar_attrib_1_char... Testing scalar_attrib_1_ushort... Testing scalar_attrib_1_short... Testing scalar_attrib_1_uint... Testing scalar_attrib_1_int... Testing scalar_attrib_1_ulong... Testing scalar_attrib_1_long... Testing scalar_attrib_1_float... Testing scalar_attrib_1_double... Testing scalar_attrib_4_bit... Testing scalar_attrib_4_uchar... Testing scalar_attrib_4_char... Testing scalar_attrib_4_ushort... Testing scalar_attrib_4_short... Testing scalar_attrib_4_uint... Testing scalar_attrib_4_int... Testing scalar_attrib_4_ulong... Testing scalar_attrib_4_long... Testing scalar_attrib_4_float... Testing scalar_attrib_4_double... Testing vector_attrib_bit... Testing vector_attrib_uchar... Testing vector_attrib_char... Testing vector_attrib_ushort... Testing vector_attrib_short... Testing vector_attrib_uint... Testing vector_attrib_int... Testing vector_attrib_ulong... Testing vector_attrib_long... Testing vector_attrib_float... Testing vector_attrib_double... Testing tensor_attrib_uchar... Testing tensor_attrib_char... Testing tensor_attrib_ushort... Testing tensor_attrib_short... Testing tensor_attrib_uint... Testing tensor_attrib_int... Testing tensor_attrib_ulong... Testing tensor_attrib_long... Testing tensor_attrib_float... Testing tensor_attrib_double... Testing subset... 67 tests passed PASS: vtk_test Running leaf_iterator_test ... Running test_build_tree_bisect_triangles ... Running test_closest_triangle ... Running test_sphere_intersect_triangles ... Running test_ray_intersect_triangles ... Running test_tree_merge_nodes ... Running test_leaf_volume ... Running test_leaf_sibling ... Running test_leaf_intersects_plane ... Running test_leaf_intersects_ray ... PASS: adaptive_kd_tree_tests Running test_set_plane ... Running test_iterator ... Running test_box_iterator ... Running test_tree_create ... Running test_box_tree_create ... Running test_leaf_containing_point_bounded_tree ... Running test_leaf_containing_point_unbounded_tree ... Running test_merge_leaf ... Running test_box_iter_neighbors ... Running test_leaf_sibling ... Running test_leaf_volume_box ... Running test_leaf_volume_gen ... Running test_leaf_splits_intersects ... Running test_box_leaf_intersects_ray ... Running test_gen_leaf_intersects_ray ... Running test_leaf_polyhedron ... PASS: bsp_tree_test PASS: file_options_test PASS: kd_tree_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test_no_template Running test_create_tag ... Running test_invalid_tag_size ... Running test_get_set_sparse_int ... Running test_get_set_dense_int ... Running test_get_set_dense_double ... Running test_get_set_bit ... Running test_get_by_tag ... Running test_get_by_tag_value ... Running test_mesh_value ... Running test_get_pointers_sparse ... Running test_get_pointers_dense ... Running test_set_pointers_sparse ... Running test_set_pointers_dense ... Running test_get_entity_tags ... Running test_delete_sparse_tag ... Running test_delete_dense_tag ... Running test_delete_mesh_tag ... Running test_delete_sparse_data ... Running test_delete_dense_data ... Running test_delete_bit_data ... Running test_create_variable_length_tag ... Running test_get_set_variable_length_sparse ... Running test_get_set_variable_length_dense ... Running test_get_set_variable_length_mesh ... Running test_get_ents_with_default_value ... Running regression_one_entity_by_var_tag ... Running regression_tag_on_nonexistent_entity ... PASS: tag_test Running test_add_entities_ordered ... Running test_add_entities_set ... Running test_add_entities_ordered_tracking ... Running test_add_entities_set_tracking ... Running test_remove_entities_ordered ... Running test_remove_entities_set ... Running test_remove_entities_ordered_tracking ... Running test_remove_entities_set_tracking ... Running test_entities_by_type_ordered ... Running test_entities_by_type_set ... Running test_entities_by_dim_ordered ... Running test_entities_by_dim_set ... Running test_subtract_set_set ... Running test_subtract_set_ordered ... Running test_subtract_ordered_set ... Running test_subtract_ordered_ordered ... Running test_subtract_set_set_tracking ... Running test_subtract_set_ordered_tracking ... Running test_subtract_ordered_set_tracking ... Running test_subtract_ordered_ordered_tracking ... Running test_itersect_set_set ... Running test_itersect_set_ordered ... Running test_itersect_ordered_set ... Running test_itersect_ordered_ordered ... Running test_itersect_set_set_tracking ... Running test_itersect_set_ordered_tracking ... Running test_itersect_ordered_set_tracking ... Running test_itersect_ordered_ordered_tracking ... Running test_unite_set_set ... Running test_unite_set_ordered ... Running test_unite_ordered_set ... Running test_unite_ordered_ordered ... Running test_unite_set_set_tracking ... Running test_unite_set_ordered_tracking ... Running test_unite_ordered_set_tracking ... Running test_unite_ordered_ordered_tracking ... Running test_contains_entities_ordered ... Running test_contains_entities_set ... Running test_clear_ordered ... Running test_clear_set ... Running test_clear_ordered_tracking ... Running test_clear_set_tracking ... ALL TESTS PASSED PASS: mesh_set_test Running test_vertices ... Running test_edges ... Running test_quads ... Running test_hexes ... Running test_geometric_topology ... Running test_geometric_sets ... Running test_blocks ... Running test_side_sets ... Running test_node_sets ... Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... Running test_multiple_files ... PASS: cub_file_test Running test_types ... Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... Running test_read_tri6_side ... Running test_read_shell_side ... Running test_read_shell_edge ... Running test_read_hex20_side ... Running test_read_block_ids ... Running test_read_sideset_ids ... Running test_read_nodeset_ids ... PASS: exodus_test Running test_read_nodes ... Running test_read_quads ... Running test_read_material_set ... Running test_read_geom_set ... PASS: gmsh_test Running test_read_nodes ... Running test_read_tets ... Running test_read_prisms ... Running test_read_hexes ... Running test_read_material_set1 ... Running test_read_material_set2 ... PASS: nastran_test Running test_read_ascii ... Running test_write_ascii ... Running test_type_option ... Running test_detect_type ... Running test_endian_option ... Running test_big_endian ... Running test_little_endian ... Running test_detect_byte_order ... PASS: stl_test Running test_dimension_pair ... Running test_type_names ... Running test_dimension ... Running test_vertices_per_entity ... Running test_num_sub_entities ... Running test_sub_entity_type_vtx ... Running test_sub_entity_type_edge ... Running test_sub_entity_type_tri ... Running test_sub_entity_type_quad ... Running test_sub_entity_type_tet ... Running test_sub_entity_type_pyr ... Running test_sub_entity_type_pri ... Running test_sub_entity_type_knife ... Running test_sub_entity_type_hex ... Running test_sub_entity_indices_vtx ... Running test_sub_entity_indices_edge ... Running test_sub_entity_indices_tri ... Running test_sub_entity_indices_quad ... Running test_sub_entity_indices_tet ... Running test_sub_entity_indices_pyr ... Running test_sub_entity_indices_pri ... Running test_sub_entity_indices_hex ... Running test_side_number_tri ... Running test_side_number_quad ... Running test_side_number_tet ... Running test_side_number_pyr ... Running test_side_number_pri ... Running test_side_number_hex ... Running test_opposite_side_tri ... Running test_opposite_side_quad ... Running test_opposite_side_tet ... Running test_opposite_side_hex ... Running test_has_mid_nodes_edge ... Running test_has_mid_nodes_tri ... Running test_has_mid_nodes_quad ... Running test_has_mid_nodes_tet ... Running test_has_mid_nodes_pyr ... Running test_has_mid_nodes_pri ... Running test_has_mid_nodes_knife ... Running test_has_mid_nodes_hex ... Running test_sub_entity_nodes_tri_edges ... Running test_sub_entity_nodes_quad_edges ... Running test_sub_entity_nodes_tet_edges ... Running test_sub_entity_nodes_tet_faces ... Running test_sub_entity_nodes_pyr_edges ... Running test_sub_entity_nodes_pyr_faces ... Running test_sub_entity_nodes_pri_edges ... Running test_sub_entity_nodes_pri_faces ... Running test_sub_entity_nodes_kni_edges ... Running test_sub_entity_nodes_kni_faces ... Running test_sub_entity_nodes_hex_edges ... Running test_sub_entity_nodes_hex_faces ... Running test_ho_node_parent ... Running test_ho_node_index ... PASS: mbcn_test Running test_construct_from_hex ... Running test_cut_with_plane ... Running test_volume ... PASS: bsp_tree_poly_test =================== All 25 tests passed =================== make[3]: Leaving directory `/home/jason/moab/test/AMD64' make[2]: Leaving directory `/home/jason/moab/test/AMD64' Making check in test make[2]: Entering directory `/home/jason/moab/test/AMD64/test' Making check in dual make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual' make dual_test make[4]: Entering directory `/home/jason/moab/test/AMD64/test/dual' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o dual_test dual_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o dual_test dual_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/dual' Usage: dual_test <mesh_file_name> PASS: dual_test ================== All 1 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' Making check in h5file make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' make h5test h5legacy h5varlen h5sets_test h5regression h5partial make[4]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5test h5file_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5test h5file_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5legacy.o -MD -MP -MF .deps/h5legacy.Tpo -c -o h5legacy.o ../../../src/test/h5file/h5legacy.cpp mv -f .deps/h5legacy.Tpo .deps/h5legacy.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5legacy h5legacy.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5legacy h5legacy.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5varlen h5varlen.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5varlen h5varlen.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5sets_test.o -MD -MP -MF .deps/h5sets_test.Tpo -c -o h5sets_test.o ../../../src/test/h5file/h5sets_test.cpp ../../../src/test/h5file/h5sets_test.cpp: In function ‘void read_write_file(MBInterface&, MBInterface&, MBEntityHandle*)’: ../../../src/test/h5file/h5sets_test.cpp:17: warning: unused variable ‘file’ mv -f .deps/h5sets_test.Tpo .deps/h5sets_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5sets_test h5sets_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5sets_test h5sets_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5regression.o -MD -MP -MF .deps/h5regression.Tpo -c -o h5regression.o ../../../src/test/h5file/h5regression.cpp mv -f .deps/h5regression.Tpo .deps/h5regression.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5regression h5regression.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5regression h5regression.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5partial h5partial.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5partial h5partial.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' creating... writing... reading... comparing... success! writing... clearing db... reading... comparing... success! cleaning up... done. PASS: h5test Running test_moab_v3_poly_format ... PASS: h5legacy Running test_var_length_no_data ... Running test_var_length_data ... Running test_var_length_big_data ... Running test_var_length_opaque ... Running test_var_length_mesh_data ... Running test_var_length_default_data ... Running test_var_length_mesh_opaque ... Running test_var_length_default_opaque ... Running test_var_length_handle_tag ... Running test_var_length_data_big ... PASS: h5varlen Running test_ranged_set_with_holes ... Running test_file_set ... Running test_small_tree ... Created binary tree containing 32 nodes. PASS: h5sets_test Running test_write_invalid_elem ... PASS: h5regression Running test_read_empty_set ... Running test_read_non_existant_set ... Running test_read_one_set_nodes ... Running test_read_one_set_elems ... Running test_read_one_set_polyhedra ... Running test_read_set_sets ... Running test_read_two_sets_nodes ... Running test_read_two_sets_elems ... Running test_read_child_sets_only ... Running test_read_child_set_contents ... Running test_read_no_child_sets ... Running test_read_contained_sets_only ... Running test_read_contained_set_contents ... Running test_read_no_contained_sets ... Running test_read_containing_sets ... Running test_read_double_tag ... Running test_read_opaque_tag ... Running test_read_handle_tag ... Running test_var_len_tag ... Running test_read_adjacencies ... Running test_read_tagged_elems ... Running test_read_tagged_nodes ... Running test_read_sides ... Running test_read_ids ... Running test_read_partial_ids ... PASS: h5partial ================== All 6 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' Making check in obb make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb' make obb_test obb_time obb_tree_tool make[4]: Entering directory `/home/jason/moab/test/AMD64/test/obb' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/obb -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT obb_test.o -MD -MP -MF .deps/obb_test.Tpo -c -o obb_test.o ../../../src/test/obb/obb_test.cpp mv -f .deps/obb_test.Tpo .deps/obb_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_test obb_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_test obb_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_time obb_time.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_time obb_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_tree_tool obb_tree_tool.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_tree_tool obb_tree_tool.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/obb' MOAB 3.99 (Alpha) No file(s) specified. Using default file "../../../src/test/3k-tri-sphere.vtk" Using default file "../../../src/test/3k-tri-cube.h5m" ../../../src/test/3k-tri-sphere.vtk ------ Building tree from 2970 2D elements No errors detected. ../../../src/test/3k-tri-cube.h5m ------ Building tree from 6 surfaces Built tree from 6 surfaces (2934 elements) No errors detected. PASS: obb_test ================== All 1 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' Making check in perf make[3]: Entering directory `/home/jason/moab/test/AMD64/test/perf' make perf seqperf adj_time make[4]: Entering directory `/home/jason/moab/test/AMD64/test/perf' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o perf perf.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o perf perf.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o seqperf seqperf.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o seqperf seqperf.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o adj_time adj_time.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o adj_time adj_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[3]: Entering directory `/home/jason/moab/test/AMD64/test' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/test' make[2]: Leaving directory `/home/jason/moab/test/AMD64/test' Making check in tools make[2]: Entering directory `/home/jason/moab/test/AMD64/tools' Making check in iMesh make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make check-recursive make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Making check in . make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make testc_cbind make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' cc -DHAVE_CONFIG_H -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DSRCDIR=../../../src/tools/iMesh -I. -I../../../src/tools/iMesh -I../.. -I../../parallel -I../../../src -I../.. -I. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT testc_cbind.o -MD -MP -MF .deps/testc_cbind.Tpo -c -o testc_cbind.o ../../../src/tools/iMesh/testc_cbind.c ../../../src/tools/iMesh/testc_cbind.c: In function ‘all_adjacency_regression’: ../../../src/tools/iMesh/testc_cbind.c:2135: warning: assignment makes integer from pointer without a cast mv -f .deps/testc_cbind.Tpo .deps/testc_cbind.Po /bin/sh ../../libtool --tag=CC --mode=link cc -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o testc_cbind testc_cbind.o libiMesh.la ../../libMOAB.la -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lm -lgcc_s -lc -lgcc_s -lm cc -Wall -pipe -g -o testc_cbind testc_cbind.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libiMesh.a /home/jason/moab/test/AMD64/.libs/libMOAB.a ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lc -lgcc_s -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make check-TESTS make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Usage: ./testc_cbind <mesh_filename> No file specified. Defaulting to: ../../../src/tools/iMesh/brick.vtk TSTT TEST PROGRAM: load_mesh: Success topology_adjacency_test: Success entity_connectivity_test: Success vertex_coordinates_test: Success topology_dimension_test: Success entity_sets_test: Success vertex_tag_test: Success entityset_tag_test: Success mesh_tag_test: Success set_remove_contained_regression: Success all_adjacency_regression: Success TSTT TEST SUMMARY: Number Tests: 11 Number Successful: 11 Number Not Implemented: 0 Number Failed: 0 PASS: testc_cbind ================== All 1 tests passed ================== make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' Making check in mbperf make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/mbperf' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/mbperf' Making check in dagmc make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/dagmc' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/tools/dagmc -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -Wall -pipe -g -MT cub2h5m.o -MD -MP -MF .deps/cub2h5m.Tpo -c -o cub2h5m.o ../../../src/tools/dagmc/cub2h5m.cc ../../../src/tools/dagmc/quads_to_tris.hpp: In function ‘int main(int, char**)’: ../../../src/tools/dagmc/quads_to_tris.hpp:18: error: too few arguments to function ‘MBErrorCode quads_to_tris(MBInterface*, MBEntityHandle)’ ../../../src/tools/dagmc/cub2h5m.cc:127: error: at this point in file ../../../src/tools/dagmc/cub2h5m.cc:48: warning: unused variable ‘dist_tol’ ../../../src/tools/dagmc/cub2h5m.cc:48: warning: unused variable ‘len_tol’ ../../../src/tools/dagmc/cub2h5m.cc:49: warning: unused variable ‘norm_tol’ ../../../src/tools/dagmc/cub2h5m.cc:91: warning: unused variable ‘s’ make[3]: *** [cub2h5m.o] Error 1 make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/dagmc' make[2]: *** [check-recursive] Error 1 make[2]: Leaving directory `/home/jason/moab/test/AMD64/tools' make[1]: *** [check-recursive] Error 1 make[1]: Leaving directory `/home/jason/moab/test/AMD64' make: *** [check] Error 2

1 0

r3346 - MOAB/trunk/tools/dagmc
by kraftche＠cae.wisc.edu 14 Nov '09

14 Nov '09

Author: kraftche Date: 2009-11-14 10:57:41 -0600 (Sat, 14 Nov 2009) New Revision: 3346 Modified: MOAB/trunk/tools/dagmc/cub2h5m.cc Log: fix build issue Modified: MOAB/trunk/tools/dagmc/cub2h5m.cc =================================================================== --- MOAB/trunk/tools/dagmc/cub2h5m.cc 2009-11-13 23:22:22 UTC (rev 3345) +++ MOAB/trunk/tools/dagmc/cub2h5m.cc 2009-11-14 16:57:41 UTC (rev 3346) @@ -124,7 +124,7 @@ result = my_ex_reader.load_file(update_name, 0, opts, NULL, 0 , 0); // convert the quads to tris - quads_to_tris( my_impl, file_set ); + quads_to_tris( my_impl ); result = my_impl->write_mesh( output_name ); assert(!result);

1 0

MOAB check for *AMD64* failed.
by Nightly Test 14 Nov '09

14 Nov '09

make check-recursive make[1]: Entering directory `/home/jason/moab/test/AMD64' Making check in mhdf make[2]: Entering directory `/home/jason/moab/test/AMD64/mhdf' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/home/jason/moab/test/AMD64/mhdf' Making check in . make[2]: Entering directory `/home/jason/moab/test/AMD64' make moab_test homxform_test scdseq_test tqdcfr test_adj seq_man_test geom_util_test xform_test obb_test vtk_test adaptive_kd_tree_tests bsp_tree_test file_options_test kd_tree_test var_len_test var_len_test_no_template tag_test mesh_set_test cub_file_test exodus_test gmsh_test nastran_test stl_test mbcn_test bsp_tree_poly_test kd_tree_tool kd_tree_time make[3]: Entering directory `/home/jason/moab/test/AMD64' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT MBTest.o -MD -MP -MF .deps/MBTest.Tpo -c -o MBTest.o ../src/MBTest.cpp mv -f .deps/MBTest.Tpo .deps/MBTest.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o moab_test MBTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o moab_test MBTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin MBTest.o: In function `mb_read_fail_test(MBInterface*)': /home/jason/moab/test/AMD64/../src/MBTest.cpp:6800: warning: the use of `tmpnam' is dangerous, better use `mkstemp' /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o homxform_test homxform_test-HomXform.o ./libMOAB.la -lm c++ -DTEST -Wall -pipe -g -Wall -pipe -g -o homxform_test homxform_test-HomXform.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT scdseq_test.o -MD -MP -MF .deps/scdseq_test.Tpo -c -o scdseq_test.o ../src/scdseq_test.cpp mv -f .deps/scdseq_test.Tpo .deps/scdseq_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o scdseq_test scdseq_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o scdseq_test scdseq_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -MT tqdcfr-Tqdcfr.o -MD -MP -MF .deps/tqdcfr-Tqdcfr.Tpo -c -o tqdcfr-Tqdcfr.o `test -f 'Tqdcfr.cpp' || echo '../src/'`Tqd! cfr.cpp mv -f .deps/tqdcfr-Tqdcfr.Tpo .deps/tqdcfr-Tqdcfr.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o tqdcfr tqdcfr-Tqdcfr.o ./libMOAB.la -lm c++ -DTEST_TQDCFR -Wall -pipe -g -Wall -pipe -g -o tqdcfr tqdcfr-Tqdcfr.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT test_adj.o -MD -MP -MF .deps/test_adj.Tpo -c -o test_adj.o ../src/test_adj.cpp mv -f .deps/test_adj.Tpo .deps/test_adj.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o test_adj test_adj.o ./libMOAB.la -lm c++ -Wall -pipe -g -o test_adj test_adj.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o seq_man_test TestTypeSequenceManager.o ./libMOAB.la -lm c++ -Wall -pipe -g -o seq_man_test TestTypeSequenceManager.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT GeomUtilTests.o -MD -MP -MF .deps/GeomUtilTests.Tpo -c -o GeomUtilTests.o ../src/GeomUtilTests.cpp mv -f .deps/GeomUtilTests.Tpo .deps/GeomUtilTests.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o geom_util_test GeomUtilTests.o ./libMOAB.la -lm c++ -Wall -pipe -g -o geom_util_test GeomUtilTests.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -DTEST -Wall -pipe -g -Wall -pipe -g -MT xform_test-MBAffineXform.o -MD -MP -MF .deps/xform_test-MBAffineXform.Tpo -c -o xform_test-MBAffineXform.o `test -f 'MBAffin! eXform.cpp' || echo '../src/'`MBAffineXform.cpp mv -f .deps/xform_test-MBAffineXform.Tpo .deps/xform_test-MBAffineXform.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -g -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o xform_test xform_test-MBAffineXform.o ./libMOAB.la -lm c++ -DTEST -Wall -pipe -g -Wall -pipe -g -o xform_test xform_test-MBAffineXform.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT OBBTest.o -MD -MP -MF .deps/OBBTest.Tpo -c -o OBBTest.o ../src/OBBTest.cpp mv -f .deps/OBBTest.Tpo .deps/OBBTest.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_test OBBTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o obb_test OBBTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT VtkTest.o -MD -MP -MF .deps/VtkTest.Tpo -c -o VtkTest.o ../src/VtkTest.cpp mv -f .deps/VtkTest.Tpo .deps/VtkTest.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o vtk_test VtkTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o vtk_test VtkTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT adaptive_kd_tree_tests.o -MD -MP -MF .deps/adaptive_kd_tree_tests.Tpo -c -o adaptive_kd_tree_tests.o ../src/adaptive_kd_tree_tests.cpp mv -f .deps/adaptive_kd_tree_tests.Tpo .deps/adaptive_kd_tree_tests.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o ./libMOAB.la -lm c++ -Wall -pipe -g -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT bsp_tree_test.o -MD -MP -MF .deps/bsp_tree_test.Tpo -c -o bsp_tree_test.o ../src/bsp_tree_test.cpp mv -f .deps/bsp_tree_test.Tpo .deps/bsp_tree_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o bsp_tree_test bsp_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o bsp_tree_test bsp_tree_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[3]: `file_options_test' is up to date. c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT kd_tree_test.o -MD -MP -MF .deps/kd_tree_test.Tpo -c -o kd_tree_test.o ../src/kd_tree_test.cpp mv -f .deps/kd_tree_test.Tpo .deps/kd_tree_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_test kd_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_test kd_tree_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o var_len_test VarLenTagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o var_len_test VarLenTagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o var_len_test_no_template var_len_test_no_template-VarLenTagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o var_len_test_no_template var_len_test_no_template-VarLenTagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT TagTest.o -MD -MP -MF .deps/TagTest.Tpo -c -o TagTest.o ../src/TagTest.cpp mv -f .deps/TagTest.Tpo .deps/TagTest.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o tag_test TagTest.o ./libMOAB.la -lm c++ -Wall -pipe -g -o tag_test TagTest.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT Test_MBMeshSet.o -MD -MP -MF .deps/Test_MBMeshSet.Tpo -c -o Test_MBMeshSet.o ../src/Test_MBMeshSet.cpp mv -f .deps/Test_MBMeshSet.Tpo .deps/Test_MBMeshSet.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o mesh_set_test Test_MBMeshSet.o ./libMOAB.la -lm c++ -Wall -pipe -g -o mesh_set_test Test_MBMeshSet.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT cub_file_test.o -MD -MP -MF .deps/cub_file_test.Tpo -c -o cub_file_test.o ../src/cub_file_test.cc mv -f .deps/cub_file_test.Tpo .deps/cub_file_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o cub_file_test cub_file_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o cub_file_test cub_file_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT exodus_test.o -MD -MP -MF .deps/exodus_test.Tpo -c -o exodus_test.o ../src/exodus_test.cc mv -f .deps/exodus_test.Tpo .deps/exodus_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o exodus_test exodus_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o exodus_test exodus_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT gmsh_test.o -MD -MP -MF .deps/gmsh_test.Tpo -c -o gmsh_test.o ../src/gmsh_test.cc mv -f .deps/gmsh_test.Tpo .deps/gmsh_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o gmsh_test gmsh_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o gmsh_test gmsh_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT nastran_test.o -MD -MP -MF .deps/nastran_test.Tpo -c -o nastran_test.o ../src/nastran_test.cc mv -f .deps/nastran_test.Tpo .deps/nastran_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o nastran_test nastran_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o nastran_test nastran_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT stl_test.o -MD -MP -MF .deps/stl_test.Tpo -c -o stl_test.o ../src/stl_test.cc mv -f .deps/stl_test.Tpo .deps/stl_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o stl_test stl_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o stl_test stl_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DSRCDIR=../src -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT mbcn_test-MBCN.o -MD -MP -MF .deps/mbcn_test-MBCN.Tpo -c -o mbcn_test-MBCN.o `test -f 'MBCN.cpp' || echo '../src/'`MBCN.cpp mv -f .deps/mbcn_test-MBCN.Tpo .deps/mbcn_test-MBCN.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -lm c++ -Wall -pipe -g -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o bsp_tree_poly_test bsp_tree_poly_test.o ./libMOAB.la -lm c++ -Wall -pipe -g -o bsp_tree_poly_test bsp_tree_poly_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT kd_tree_tool.o -MD -MP -MF .deps/kd_tree_tool.Tpo -c -o kd_tree_tool.o ../src/kd_tree_tool.cpp mv -f .deps/kd_tree_tool.Tpo .deps/kd_tree_tool.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_tool kd_tree_tool.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_tool kd_tree_tool.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I./parallel -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -DSRCDIR=../src -Wall -pipe -g -MT kd_tree_time.o -MD -MP -MF .deps/kd_tree_time.Tpo -c -o kd_tree_time.o ../src/kd_tree_time.cpp mv -f .deps/kd_tree_time.Tpo .deps/kd_tree_time.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o kd_tree_time kd_tree_time.o ./libMOAB.la -lm c++ -Wall -pipe -g -o kd_tree_time kd_tree_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[3]: Leaving directory `/home/jason/moab/test/AMD64' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/AMD64' Size of mConnMap = 10512 Size of mUpConnMap = 59904 Size of MBCN = 1 MB TEST PROGRAM: mb_adjacent_vertex_test: Success mb_adjacencies_test: Success mb_adjacencies_create_delete_test: Success mb_upward_adjacencies_test: Success mb_vertex_coordinate_test: Success mb_vertex_tag_test: Success mb_bar_connectivity_test: Success mb_tri_connectivity_test: Success mb_quad_connectivity_test: Success mb_tet_connectivity_test: Success mb_temporary_test: Success mb_hex_connectivity_test: Success mb_mesh_sets_set_test: Success mb_mesh_sets_list_test: Success mb_mesh_set_parent_child_test: Success mb_mesh_set_set_appends: Success mb_mesh_set_list_appends: Success mb_mesh_set_root_appends: Success mb_mesh_set_set_replace_test: Success mb_mesh_set_list_replace_test: Success mb_mesh_set_flag_test: Success mb_tags_test: Success mb_dense_tag_test: Success mb_sparse_tag_test: Success mb_write_mesh_test: Success mb_delete_mesh_test: Success mb_meshset_tracking_test: Success mb_higher_order_test: Success mb_bit_tags_test: Success mb_entity_conversion_test: Success mb_forced_adjacencies_test: Success mb_canon_number_test: Success mb_poly_test: Success mb_range_test: Success mb_range_erase_test: Success mb_topo_util_test: Success mb_split_test: Success mb_range_seq_intersect_test: Success mb_poly_adjacency_test: Success mb_memory_use_test: Success mb_skin_curve_test: Success mb_skin_curve_adj_test: Success mb_skin_surface_test: Success mb_skin_surface_adj_test: Success mb_skin_volume_test: Success mb_skin_volume_adj_test: Success mb_read_fail_test: /tmp/file03eGow : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/file03eGow : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/file03eGow : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ./tmp/file03eGow : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' ERROR: Attribute type 4 already registered .ERROR: Attribute type 5 already registered .ERROR: Attribute type 6 already registered ../moab_test : unknown file type, try '-t' Success mb_merge_update_test: Success mb_merge_test: ---Starting Merge Tests--- ---Testing:"test/cell1.gen"--- Loaded test/cell1.gen ---Testing:"test/cell2.gen"--- Loaded test/cell2.gen num hexes = 28 fl = 68 rl = 0 nodes.size() = 72 ---Success--- coin_nodes.size() = 13 TIME: 1237.74 seconds. Success mb_stress_test: Beginning Stress Test . . . Reading elements Read 256000 entities in 12.07 seconds at 21209.6 elements per second. Transforming and copying elements Transformed and created 256000 entities in 107.93 seconds Creating meshset Created meshset with 512000 entities in 0 seconds Writing 512K element file . . . Wrote file with 512000 entities in 129.89 seconds Total time: 249.91 seconds. Success MB TEST SUMMARY: Number Tests: 50 Number Successful: 50 Number Failed: 0 PASS: moab_test All tests passed. PASS: homxform_test All tests passed. PASS: scdseq_test Usage: tqdcfr <cub_file_name> Success. Success. PASS: tqdcfr PASS: test_adj Running test_basic ... Running test_lower_bound ... Running test_upper_bound ... Running test_find ... Running test_get_entities ... Running test_insert_sequence_merge ... Running test_insert_sequence_nomerge ... Running test_remove_sequence ... Running test_replace_subsequence ... Running test_erase ... Running test_find_free_handle ... Running test_find_free_sequence ... Running test_is_free_sequence ... Running regression_svn1952 ... Running regression_svn1958 ... Running regression_svn1960 ... ALL TESTS PASSED PASS: seq_man_test Running test_box_plane_overlap ... Running test_box_linear_elem_overlap_tri ... Running test_box_linear_elem_overlap_tet ... Running test_box_linear_elem_overlap_hex ... Running test_box_tri_overlap ... Running test_box_tet_overlap ... Running test_box_hex_overlap ... Running test_ray_tri_intersect ... Running test_closest_location_on_tri ... Running test_closest_location_on_polygon ... Running test_segment_box_intersect ... Running test_closest_location_on_box ... PASS: geom_util_test PASS: xform_test PASS: obb_test Testing edge2... Testing edge3... Testing tri3... Testing tri6... Testing quad4... Testing quad8... Testing quad9... Testing polygon... Testing tet4... Testing tet10... Testing hex8... Testing hex20... Testing hex27... Testing wedge... Testing wedge15... Testing pyramid... Testing pyramid13... Testing structured_points_2d... Testing structured_grid_2d... Testing rectilinear_grid_2d... Testing structured_points_3d... Testing structured_grid_3d... Testing rectilinear_grid_3d... Testing scalar_attrib_1_bit... Testing scalar_attrib_1_uchar... Testing scalar_attrib_1_char... Testing scalar_attrib_1_ushort... Testing scalar_attrib_1_short... Testing scalar_attrib_1_uint... Testing scalar_attrib_1_int... Testing scalar_attrib_1_ulong... Testing scalar_attrib_1_long... Testing scalar_attrib_1_float... Testing scalar_attrib_1_double... Testing scalar_attrib_4_bit... Testing scalar_attrib_4_uchar... Testing scalar_attrib_4_char... Testing scalar_attrib_4_ushort... Testing scalar_attrib_4_short... Testing scalar_attrib_4_uint... Testing scalar_attrib_4_int... Testing scalar_attrib_4_ulong... Testing scalar_attrib_4_long... Testing scalar_attrib_4_float... Testing scalar_attrib_4_double... Testing vector_attrib_bit... Testing vector_attrib_uchar... Testing vector_attrib_char... Testing vector_attrib_ushort... Testing vector_attrib_short... Testing vector_attrib_uint... Testing vector_attrib_int... Testing vector_attrib_ulong... Testing vector_attrib_long... Testing vector_attrib_float... Testing vector_attrib_double... Testing tensor_attrib_uchar... Testing tensor_attrib_char... Testing tensor_attrib_ushort... Testing tensor_attrib_short... Testing tensor_attrib_uint... Testing tensor_attrib_int... Testing tensor_attrib_ulong... Testing tensor_attrib_long... Testing tensor_attrib_float... Testing tensor_attrib_double... Testing subset... 67 tests passed PASS: vtk_test Running leaf_iterator_test ... Running test_build_tree_bisect_triangles ... Running test_closest_triangle ... Running test_sphere_intersect_triangles ... Running test_ray_intersect_triangles ... Running test_tree_merge_nodes ... Running test_leaf_volume ... Running test_leaf_sibling ... Running test_leaf_intersects_plane ... Running test_leaf_intersects_ray ... PASS: adaptive_kd_tree_tests Running test_set_plane ... Running test_iterator ... Running test_box_iterator ... Running test_tree_create ... Running test_box_tree_create ... Running test_leaf_containing_point_bounded_tree ... Running test_leaf_containing_point_unbounded_tree ... Running test_merge_leaf ... Running test_box_iter_neighbors ... Running test_leaf_sibling ... Running test_leaf_volume_box ... Running test_leaf_volume_gen ... Running test_leaf_splits_intersects ... Running test_box_leaf_intersects_ray ... Running test_gen_leaf_intersects_ray ... Running test_leaf_polyhedron ... PASS: bsp_tree_test PASS: file_options_test PASS: kd_tree_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test_no_template Running test_create_tag ... Running test_invalid_tag_size ... Running test_get_set_sparse_int ... Running test_get_set_dense_int ... Running test_get_set_dense_double ... Running test_get_set_bit ... Running test_get_by_tag ... Running test_get_by_tag_value ... Running test_mesh_value ... Running test_get_pointers_sparse ... Running test_get_pointers_dense ... Running test_set_pointers_sparse ... Running test_set_pointers_dense ... Running test_get_entity_tags ... Running test_delete_sparse_tag ... Running test_delete_dense_tag ... Running test_delete_mesh_tag ... Running test_delete_sparse_data ... Running test_delete_dense_data ... Running test_delete_bit_data ... Running test_create_variable_length_tag ... Running test_get_set_variable_length_sparse ... Running test_get_set_variable_length_dense ... Running test_get_set_variable_length_mesh ... Running test_get_ents_with_default_value ... Running regression_one_entity_by_var_tag ... Running regression_tag_on_nonexistent_entity ... PASS: tag_test Running test_add_entities_ordered ... Running test_add_entities_set ... Running test_add_entities_ordered_tracking ... Running test_add_entities_set_tracking ... Running test_remove_entities_ordered ... Running test_remove_entities_set ... Running test_remove_entities_ordered_tracking ... Running test_remove_entities_set_tracking ... Running test_entities_by_type_ordered ... Running test_entities_by_type_set ... Running test_entities_by_dim_ordered ... Running test_entities_by_dim_set ... Running test_subtract_set_set ... Running test_subtract_set_ordered ... Running test_subtract_ordered_set ... Running test_subtract_ordered_ordered ... Running test_subtract_set_set_tracking ... Running test_subtract_set_ordered_tracking ... Running test_subtract_ordered_set_tracking ... Running test_subtract_ordered_ordered_tracking ... Running test_itersect_set_set ... Running test_itersect_set_ordered ... Running test_itersect_ordered_set ... Running test_itersect_ordered_ordered ... Running test_itersect_set_set_tracking ... Running test_itersect_set_ordered_tracking ... Running test_itersect_ordered_set_tracking ... Running test_itersect_ordered_ordered_tracking ... Running test_unite_set_set ... Running test_unite_set_ordered ... Running test_unite_ordered_set ... Running test_unite_ordered_ordered ... Running test_unite_set_set_tracking ... Running test_unite_set_ordered_tracking ... Running test_unite_ordered_set_tracking ... Running test_unite_ordered_ordered_tracking ... Running test_contains_entities_ordered ... Running test_contains_entities_set ... Running test_clear_ordered ... Running test_clear_set ... Running test_clear_ordered_tracking ... Running test_clear_set_tracking ... ALL TESTS PASSED PASS: mesh_set_test Running test_vertices ... Running test_edges ... Running test_quads ... Running test_hexes ... Running test_geometric_topology ... Running test_geometric_sets ... Running test_blocks ... Running test_side_sets ... Running test_node_sets ... Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... Running test_multiple_files ... PASS: cub_file_test Running test_types ... Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... Running test_read_tri6_side ... Running test_read_shell_side ... Running test_read_shell_edge ... Running test_read_hex20_side ... Running test_read_block_ids ... Running test_read_sideset_ids ... Running test_read_nodeset_ids ... PASS: exodus_test Running test_read_nodes ... Running test_read_quads ... Running test_read_material_set ... Running test_read_geom_set ... PASS: gmsh_test Running test_read_nodes ... Running test_read_tets ... Running test_read_prisms ... Running test_read_hexes ... Running test_read_material_set1 ... Running test_read_material_set2 ... PASS: nastran_test Running test_read_ascii ... Running test_write_ascii ... Running test_type_option ... Running test_detect_type ... Running test_endian_option ... Running test_big_endian ... Running test_little_endian ... Running test_detect_byte_order ... PASS: stl_test Running test_dimension_pair ... Running test_type_names ... Running test_dimension ... Running test_vertices_per_entity ... Running test_num_sub_entities ... Running test_sub_entity_type_vtx ... Running test_sub_entity_type_edge ... Running test_sub_entity_type_tri ... Running test_sub_entity_type_quad ... Running test_sub_entity_type_tet ... Running test_sub_entity_type_pyr ... Running test_sub_entity_type_pri ... Running test_sub_entity_type_knife ... Running test_sub_entity_type_hex ... Running test_sub_entity_indices_vtx ... Running test_sub_entity_indices_edge ... Running test_sub_entity_indices_tri ... Running test_sub_entity_indices_quad ... Running test_sub_entity_indices_tet ... Running test_sub_entity_indices_pyr ... Running test_sub_entity_indices_pri ... Running test_sub_entity_indices_hex ... Running test_side_number_tri ... Running test_side_number_quad ... Running test_side_number_tet ... Running test_side_number_pyr ... Running test_side_number_pri ... Running test_side_number_hex ... Running test_opposite_side_tri ... Running test_opposite_side_quad ... Running test_opposite_side_tet ... Running test_opposite_side_hex ... Running test_has_mid_nodes_edge ... Running test_has_mid_nodes_tri ... Running test_has_mid_nodes_quad ... Running test_has_mid_nodes_tet ... Running test_has_mid_nodes_pyr ... Running test_has_mid_nodes_pri ... Running test_has_mid_nodes_knife ... Running test_has_mid_nodes_hex ... Running test_sub_entity_nodes_tri_edges ... Running test_sub_entity_nodes_quad_edges ... Running test_sub_entity_nodes_tet_edges ... Running test_sub_entity_nodes_tet_faces ... Running test_sub_entity_nodes_pyr_edges ... Running test_sub_entity_nodes_pyr_faces ... Running test_sub_entity_nodes_pri_edges ... Running test_sub_entity_nodes_pri_faces ... Running test_sub_entity_nodes_kni_edges ... Running test_sub_entity_nodes_kni_faces ... Running test_sub_entity_nodes_hex_edges ... Running test_sub_entity_nodes_hex_faces ... Running test_ho_node_parent ... Running test_ho_node_index ... PASS: mbcn_test Running test_construct_from_hex ... Running test_cut_with_plane ... Running test_volume ... PASS: bsp_tree_poly_test =================== All 25 tests passed =================== make[3]: Leaving directory `/home/jason/moab/test/AMD64' make[2]: Leaving directory `/home/jason/moab/test/AMD64' Making check in test make[2]: Entering directory `/home/jason/moab/test/AMD64/test' Making check in dual make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual' make dual_test make[4]: Entering directory `/home/jason/moab/test/AMD64/test/dual' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/dual -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT dual_test.o -MD -MP -MF .deps/dual_test.Tpo -c -o dual_test.o ../../../src/test/dual/dual_test.cpp mv -f .deps/dual_test.Tpo .deps/dual_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o dual_test dual_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o dual_test dual_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/dual' Usage: dual_test <mesh_file_name> PASS: dual_test ================== All 1 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' Making check in h5file make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' make h5test h5legacy h5varlen h5sets_test h5regression h5partial make[4]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5file_test.o -MD -MP -MF .deps/h5file_test.Tpo -c -o h5file_test.o ../../../src/test/h5file/h5file_test.cpp mv -f .deps/h5file_test.Tpo .deps/h5file_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5test h5file_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5test h5file_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5legacy.o -MD -MP -MF .deps/h5legacy.Tpo -c -o h5legacy.o ../../../src/test/h5file/h5legacy.cpp mv -f .deps/h5legacy.Tpo .deps/h5legacy.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5legacy h5legacy.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5legacy h5legacy.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5varlen.o -MD -MP -MF .deps/h5varlen.Tpo -c -o h5varlen.o ../../../src/test/h5file/h5varlen.cpp mv -f .deps/h5varlen.Tpo .deps/h5varlen.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5varlen h5varlen.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5varlen h5varlen.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5sets_test.o -MD -MP -MF .deps/h5sets_test.Tpo -c -o h5sets_test.o ../../../src/test/h5file/h5sets_test.cpp ../../../src/test/h5file/h5sets_test.cpp: In function ‘void read_write_file(MBInterface&, MBInterface&, MBEntityHandle*)’: ../../../src/test/h5file/h5sets_test.cpp:17: warning: unused variable ‘file’ mv -f .deps/h5sets_test.Tpo .deps/h5sets_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5sets_test h5sets_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5sets_test h5sets_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5regression.o -MD -MP -MF .deps/h5regression.Tpo -c -o h5regression.o ../../../src/test/h5file/h5regression.cpp mv -f .deps/h5regression.Tpo .deps/h5regression.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5regression h5regression.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5regression h5regression.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/parallel -I../../parallel -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT h5partial.o -MD -MP -MF .deps/h5partial.Tpo -c -o h5partial.o ../../../src/test/h5file/h5partial.cpp mv -f .deps/h5partial.Tpo .deps/h5partial.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o h5partial h5partial.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o h5partial h5partial.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' creating... writing... reading... comparing... success! writing... clearing db... reading... comparing... success! cleaning up... done. PASS: h5test Running test_moab_v3_poly_format ... PASS: h5legacy Running test_var_length_no_data ... Running test_var_length_data ... Running test_var_length_big_data ... Running test_var_length_opaque ... Running test_var_length_mesh_data ... Running test_var_length_default_data ... Running test_var_length_mesh_opaque ... Running test_var_length_default_opaque ... Running test_var_length_handle_tag ... Running test_var_length_data_big ... PASS: h5varlen Running test_ranged_set_with_holes ... Running test_file_set ... Running test_small_tree ... Created binary tree containing 32 nodes. PASS: h5sets_test Running test_write_invalid_elem ... PASS: h5regression Running test_read_empty_set ... Running test_read_non_existant_set ... Running test_read_one_set_nodes ... Running test_read_one_set_elems ... Running test_read_one_set_polyhedra ... Running test_read_set_sets ... Running test_read_two_sets_nodes ... Running test_read_two_sets_elems ... Running test_read_child_sets_only ... Running test_read_child_set_contents ... Running test_read_no_child_sets ... Running test_read_contained_sets_only ... Running test_read_contained_set_contents ... Running test_read_no_contained_sets ... Running test_read_containing_sets ... Running test_read_double_tag ... Running test_read_opaque_tag ... Running test_read_handle_tag ... Running test_var_len_tag ... Running test_read_adjacencies ... Running test_read_tagged_elems ... Running test_read_tagged_nodes ... Running test_read_sides ... Running test_read_ids ... Running test_read_partial_ids ... PASS: h5partial ================== All 6 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' Making check in obb make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb' make obb_test obb_time obb_tree_tool make[4]: Entering directory `/home/jason/moab/test/AMD64/test/obb' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/obb -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT obb_test.o -MD -MP -MF .deps/obb_test.Tpo -c -o obb_test.o ../../../src/test/obb/obb_test.cpp mv -f .deps/obb_test.Tpo .deps/obb_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_test obb_test.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_test obb_test.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/obb -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT obb_time.o -MD -MP -MF .deps/obb_time.Tpo -c -o obb_time.o ../../../src/test/obb/obb_time.cpp mv -f .deps/obb_time.Tpo .deps/obb_time.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_time obb_time.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_time obb_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/obb -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT obb_tree_tool.o -MD -MP -MF .deps/obb_tree_tool.Tpo -c -o obb_tree_tool.o ../../../src/test/obb/obb_tree_tool.cpp mv -f .deps/obb_tree_tool.Tpo .deps/obb_tree_tool.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o obb_tree_tool obb_tree_tool.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o obb_tree_tool obb_tree_tool.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' make check-TESTS make[4]: Entering directory `/home/jason/moab/test/AMD64/test/obb' MOAB 3.99 (Alpha) No file(s) specified. Using default file "../../../src/test/3k-tri-sphere.vtk" Using default file "../../../src/test/3k-tri-cube.h5m" ../../../src/test/3k-tri-sphere.vtk ------ Building tree from 2970 2D elements No errors detected. ../../../src/test/3k-tri-cube.h5m ------ Building tree from 6 surfaces Built tree from 6 surfaces (2934 elements) No errors detected. PASS: obb_test ================== All 1 tests passed ================== make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' Making check in perf make[3]: Entering directory `/home/jason/moab/test/AMD64/test/perf' make perf seqperf adj_time make[4]: Entering directory `/home/jason/moab/test/AMD64/test/perf' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/perf -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/tools/iMesh -I../../tools/iMesh -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT perf.o -MD -MP -MF .deps/perf.Tpo -c -o perf.o ../../../src/test/perf/perf.cpp mv -f .deps/perf.Tpo .deps/perf.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o perf perf.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o perf perf.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/perf -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/tools/iMesh -I../../tools/iMesh -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT seqperf.o -MD -MP -MF .deps/seqperf.Tpo -c -o seqperf.o ../../../src/test/perf/seqperf.cpp mv -f .deps/seqperf.Tpo .deps/seqperf.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o seqperf seqperf.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o seqperf seqperf.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/perf -I../.. -I../../parallel -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/tools/iMesh -I../../tools/iMesh -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT adj_time.o -MD -MP -MF .deps/adj_time.Tpo -c -o adj_time.o ../../../src/test/perf/adj_time.cpp mv -f .deps/adj_time.Tpo .deps/adj_time.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o adj_time adj_time.o ../../libMOAB.la -lm c++ -Wall -pipe -g -o adj_time adj_time.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[4]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[3]: Entering directory `/home/jason/moab/test/AMD64/test' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/test' make[2]: Leaving directory `/home/jason/moab/test/AMD64/test' Making check in tools make[2]: Entering directory `/home/jason/moab/test/AMD64/tools' Making check in iMesh make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make check-recursive make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Making check in . make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make testc_cbind make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' cc -DHAVE_CONFIG_H -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DSRCDIR=../../../src/tools/iMesh -I. -I../../../src/tools/iMesh -I../.. -I../../parallel -I../../../src -I../.. -I. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -g -MT testc_cbind.o -MD -MP -MF .deps/testc_cbind.Tpo -c -o testc_cbind.o ../../../src/tools/iMesh/testc_cbind.c ../../../src/tools/iMesh/testc_cbind.c: In function ‘all_adjacency_regression’: ../../../src/tools/iMesh/testc_cbind.c:2135: warning: assignment makes integer from pointer without a cast mv -f .deps/testc_cbind.Tpo .deps/testc_cbind.Po /bin/sh ../../libtool --tag=CC --mode=link cc -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o testc_cbind testc_cbind.o libiMesh.la ../../libMOAB.la -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lm -lgcc_s -lc -lgcc_s -lm cc -Wall -pipe -g -o testc_cbind testc_cbind.o -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ./.libs/libiMesh.a /home/jason/moab/test/AMD64/.libs/libMOAB.a ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lc -lgcc_s -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make check-TESTS make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Usage: ./testc_cbind <mesh_filename> No file specified. Defaulting to: ../../../src/tools/iMesh/brick.vtk TSTT TEST PROGRAM: load_mesh: Success topology_adjacency_test: Success entity_connectivity_test: Success vertex_coordinates_test: Success topology_dimension_test: Success entity_sets_test: Success vertex_tag_test: Success entityset_tag_test: Success mesh_tag_test: Success set_remove_contained_regression: Success all_adjacency_regression: Success TSTT TEST SUMMARY: Number Tests: 11 Number Successful: 11 Number Not Implemented: 0 Number Failed: 0 PASS: testc_cbind ================== All 1 tests passed ================== make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' Making check in mbperf make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/mbperf' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/mbperf' Making check in dagmc make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/dagmc' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin -o libdagmc.la -rpath /usr/local/lib DagMC.lo -lm rm -fr .libs/libdagmc.a .libs/libdagmc.la .libs/libdagmc.lai ar cru .libs/libdagmc.a DagMC.o ranlib .libs/libdagmc.a creating libdagmc.la (cd .libs && rm -f libdagmc.la && ln -s ../libdagmc.la libdagmc.la) /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -g -R/home/jason/cgm/test/cubit/.libs -R/opt/cubit-10.2-amd64/bin -o cgm2moab main.o cubfile.o libdagmc.la ../../libMOAB.la -lcgm -lcubiti19 -lm c++ -Wall -pipe -g -o cgm2moab main.o cubfile.o ./.libs/libdagmc.a -L/home/jason/cgm/test/cubit/.libs -L/opt/cubit-10.2-amd64/bin ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz /home/jason/cgm/test/cubit/.libs/libcgm.a -lcubiti19 -lm -Wl,--rpath -Wl,/home/jason/cgm/test/cubit/.libs -Wl,--rpath -Wl,/opt/cubit-10.2-amd64/bin main.o: In function `main': /home/jason/moab/test/AMD64/tools/dagmc/../../../src/tools/dagmc/main.cc:136: warning: the use of `tempnam' is dangerous, better use `mkstemp' /usr/bin/ld: warning: libstdc++.so.5, needed by /opt/cubit-10.2-amd64/bin/libcubiti19.so, may conflict with libstdc++.so.6 c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/tools/dagmc -I../.. -I../../parallel -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DTEMPLATE_DEFS_INCLUDED -DHAVE_ACIS -I/home/jason/cgm/test/cubit/../trunk -I/home/jason/cgm/test/cubit/../trunk/util -I/home/jason/cgm/test/cubit/util -I/home/jason/cgm/test/cubit/../trunk/init -I/home/jason/cgm/test/cubit/init -I/home/jason/cgm/test/cubit/../trunk/geom -I/home/jason/cgm/test/cubit/geom -I/home/jason/cgm/test/cubit/../trunk/geom/ACIS -I/home/jason/cgm/test/cubit/../trunk/geom/virtual -I/home/jason/cgm/test/cubit/../trunk/geom/facet -I/home/jason/cgm/test/cubit/../trunk/geom/facetbool -I/home/jason/cgm/test/cubit/../trunk/geom/Cholla -DCGM -Wall -pipe -g -MT cub2h5m.o -MD -MP -MF .deps/cub2h5m.Tpo -c -o cub2h5m.o ../../../src/tools/dagmc/cub2h5m.cc ../../../src/tools/dagmc/cub2h5m.cc: In function ‘int main(int, char**)’: ../../../src/tools/dagmc/cub2h5m.cc:127: error: ‘file_set’ was not declared in this scope ../../../src/tools/dagmc/cub2h5m.cc:48: warning: unused variable ‘dist_tol’ ../../../src/tools/dagmc/cub2h5m.cc:48: warning: unused variable ‘len_tol’ ../../../src/tools/dagmc/cub2h5m.cc:49: warning: unused variable ‘norm_tol’ ../../../src/tools/dagmc/cub2h5m.cc:91: warning: unused variable ‘s’ make[3]: *** [cub2h5m.o] Error 1 make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/dagmc' make[2]: *** [check-recursive] Error 1 make[2]: Leaving directory `/home/jason/moab/test/AMD64/tools' make[1]: *** [check-recursive] Error 1 make[1]: Leaving directory `/home/jason/moab/test/AMD64' make: *** [check] Error 2

1 0

r3345 - MOAB/trunk/m4
by kraftche＠cae.wisc.edu 13 Nov '09

13 Nov '09

Author: kraftche Date: 2009-11-13 17:22:22 -0600 (Fri, 13 Nov 2009) New Revision: 3345 Modified: MOAB/trunk/m4/hdf5.m4 Log: fix HDF5 library link order Modified: MOAB/trunk/m4/hdf5.m4 =================================================================== --- MOAB/trunk/m4/hdf5.m4 2009-11-13 21:39:28 UTC (rev 3344) +++ MOAB/trunk/m4/hdf5.m4 2009-11-13 23:22:22 UTC (rev 3345) @@ -175,7 +175,7 @@ HDF5_LDFLAGS= HDF5_LIBS= else - HDF5_LIBS="$HDF5_LIBS -l$HDF5_LIBNAME" + HDF5_LIBS="-l$HDF5_LIBNAME $HDF5_LIBS" fi CPPFLAGS="$old_CPPFLAGS"

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