February 2009 - moab-dev - mailman3.cels.anl.gov

Creation of parallel tags
by Jed Brown 02 Mar '09

02 Mar '09

It looks like these don't get created by default any more? At least, some code is failing due to lack of the parallel status and related tags. Do I need a different magic string, or to somehow tell MOAB that they need to be created? Looking at some iMeshP implementation, it looks like a tag with the magic name is just being created? I tried that, but then I get traces like this. [brakk:25133] *** Process received signal *** [brakk:25133] Signal: Segmentation fault (11) [brakk:25133] Signal code: Address not mapped (1) [brakk:25133] Failing at address: 0x20 [brakk:25133] [ 0] /lib/libpthread.so.0 [0x7f8a6f224920] [brakk:25133] [ 1] /home/jed/usr/lib/libMOAB.so.0(_ZNK19TypeSequenceManager12get_entitiesER7MBRange+0x4a) [0x7f8a6eaec3d0] [brakk:25133] [ 2] /home/jed/usr/lib/libMOAB.so.0(_ZNK15SequenceManager12get_entitiesE12MBEntityTypeR7MBRange+0x3d) [0x7f8a6eaec487] [brakk:25133] [ 3] /home/jed/usr/lib/libMOAB.so.0(_ZNK6MBCore20get_entities_by_typeEm12MBEntityTypeR7MBRangeb+0xbd) [0x7f8a6eae64dd] [brakk:25133] [ 4] /home/jed/usr/lib/libMOAB.so.0(_ZNK6MBCore28get_entities_by_type_and_tagEm12MBEntityTypePKPPvPKPKviR7MBRangeib+0x87) [0x7f8a6eae626f] [brakk:25133] [ 5] /home/jed/usr/lib/libiMesh.so.0(imesh_getentsbytagsrec_+0x333) [0x7f8a70ce4e92] [brakk:25133] [ 6] ./ptest(main+0x1e19) [0x40e7d9] [brakk:25133] [ 7] /lib/libc.so.6(__libc_start_main+0xe6) [0x7f8a6eee0546] [brakk:25133] [ 8] ./ptest [0x40b209] [brakk:25133] *** End of error message *** What is the state of iMeshP? I know Jason has implemented a fair amount, but is it ready for use? It seems unnecessarily complex (a fair bit of the functionality is set intersection in serial) and since (as far as I know) nobody is yet developing code against it, possibly subject to major change. If there is some confidence that at least the philosophy is stable (even though some details of the API are likely to change), then I don't mind using it. Jed

3 7

MOAB distcheck failed.
by Nightly Test 02 Mar '09

02 Mar '09

checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for a sed that does not truncate output... /bin/sed checking for style of include used by make... GNU checking for cc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... gcc3 checking how to run the C preprocessor... cc -E checking for CC... no checking for aCC... no checking for cxx... no checking for xlC_r... no checking for xlC... no checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for known C compilers... GNU checking for known compiler/OS combinations... GNU:x86_64 checking for known c++ compilers... GNU checking for known compiler/OS combinations... GNU:x86_64 checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognize dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... c++ -E checking the maximum length of command line arguments... 98304 checking command to parse /usr/bin/nm -B output from cc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC checking if cc PIC flag -fPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking whether the cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by c++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC checking if c++ PIC flag -fPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate checking for gunzip... gunzip -c checking for gzip... (cached) gunzip -c checking for zcat... (cached) gunzip -c checking if C++ compiler supports template class specialization... yes checking if C++ compiler supports template function specialization... yes checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lgfortranbegin -lgfortran -lm checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for size_t... yes checking for ptrdiff_t... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking for C++ unordered_map... std::tr1 checking for deflate in -lz... yes checking for SZ_Decompress in -lsz... no checking if HDF5 support is enabled... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fopen in -lhdf5... yes checking if NetCDF support is enabled... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking sstream.h usability... no checking sstream.h presence... no checking for sstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for netcdf.hh... yes checking for netcdf_c++ library... yes checking if mbconvert is to be built... yes checking if hexmodops is to be built... yes checking if mbchaco is to be built... no checking if mbperf is to be built... yes checking if qvdual is to be built... no checking if mbsize is to be built... yes checking if mbskin is to be built... yes checking if mbtagprop is to be built... yes checking if mcnpmit is to be built... no checking if mbcoupler is to be built... no checking if spheredecomp is to be built... yes checking if mbsurfplot is to be built... yes checking if mbzoltan is to be built... no checking if dagmc is to be built... yes checking if gsets is to be built... yes checking if iMesh support is to be built... yes configure: creating ./config.status config.status: creating Makefile config.status: creating moab.make config.status: creating testdir.h config.status: creating parallel/Makefile config.status: creating mhdf/Makefile config.status: creating test/Makefile config.status: creating test/h5file/Makefile config.status: creating test/dual/Makefile config.status: creating test/obb/Makefile config.status: creating test/perf/Makefile config.status: creating tools/Makefile config.status: creating tools/iMesh/Makefile config.status: creating tools/iMesh/iMesh-Defs.inc config.status: creating tools/iMesh/SIDL/iMesh-SIDL-Defs.inc config.status: creating tools/iMesh/SIDL/Makefile config.status: creating tools/iMesh/SIDL/common.make config.status: creating tools/mbperf/Makefile config.status: creating tools/mbchaco/Makefile config.status: creating tools/mbcoupler/Makefile config.status: creating tools/mbzoltan/Config.moab config.status: creating tools/mbzoltan/Makefile config.status: creating tools/mcnpmit/Makefile config.status: creating tools/qvdual/Makefile config.status: creating tools/dagmc/Makefile config.status: creating tools/dagmc/dagmc.make config.status: creating doc/Makefile config.status: creating doxygen/Makefile config.status: creating config.h config.status: creating MBVersion.h config.status: creating MBEntityHandle.h config.status: creating MBCN_FCDefs.h config.status: executing depfiles commands C: cc -Wall -pipe -pedantic -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map C++: c++ -Wall -pipe -pedantic -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map Fortran: gfortran -g -O2 -O2 -DNDEBUG { test ! -d moab-3.99 || { find moab-3.99 -type d ! -perm -200 -exec chmod u+w {} ';' && rm -fr moab-3.99; }; } test -d moab-3.99 || mkdir moab-3.99 list='mhdf parallel . test tools doc doxygen'; for subdir in $list; do \ if test "$subdir" = .; then :; else \ test -d "moab-3.99/$subdir" \ || /bin/mkdir -p "moab-3.99/$subdir" \ || exit 1; \ distdir=`CDPATH="${ZSH_VERSION+.}:" && cd moab-3.99 && pwd`; \ top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd moab-3.99 && pwd`; \ (cd $subdir && \ make \ top_distdir="$top_distdir" \ distdir="$distdir/$subdir" \ am__remove_distdir=: \ am__skip_length_check=: \ distdir) \ || exit 1; \ fi; \ done make[1]: Entering directory `/home/jason/moab/test/dist/mhdf' make[1]: Leaving directory `/home/jason/moab/test/dist/mhdf' make[1]: Entering directory `/home/jason/moab/test/dist/parallel' list=''; for subdir in $list; do \ if test "$subdir" = .; then :; else \ test -d "/home/jason/moab/test/dist/moab-3.99/parallel/$subdir" \ || /bin/mkdir -p "/home/jason/moab/test/dist/moab-3.99/parallel/$subdir" \ || exit 1; \ distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99/parallel && pwd`; \ top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99 && pwd`; \ (cd $subdir && \ make \ top_distdir="$top_distdir" \ distdir="$distdir/$subdir" \ am__remove_distdir=: \ am__skip_length_check=: \ distdir) \ || exit 1; \ fi; \ done make[1]: Leaving directory `/home/jason/moab/test/dist/parallel' make[1]: Entering directory `/home/jason/moab/test/dist/test' list='dual h5file obb perf'; for subdir in $list; do \ if test "$subdir" = .; then :; else \ test -d "/home/jason/moab/test/dist/moab-3.99/test/$subdir" \ || /bin/mkdir -p "/home/jason/moab/test/dist/moab-3.99/test/$subdir" \ || exit 1; \ distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99/test && pwd`; \ top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99 && pwd`; \ (cd $subdir && \ make \ top_distdir="$top_distdir" \ distdir="$distdir/$subdir" \ am__remove_distdir=: \ am__skip_length_check=: \ distdir) \ || exit 1; \ fi; \ done make[2]: Entering directory `/home/jason/moab/test/dist/test/dual' make[2]: Leaving directory `/home/jason/moab/test/dist/test/dual' make[2]: Entering directory `/home/jason/moab/test/dist/test/h5file' make[2]: Leaving directory `/home/jason/moab/test/dist/test/h5file' make[2]: Entering directory `/home/jason/moab/test/dist/test/obb' make[2]: Leaving directory `/home/jason/moab/test/dist/test/obb' make[2]: Entering directory `/home/jason/moab/test/dist/test/perf' make[2]: Leaving directory `/home/jason/moab/test/dist/test/perf' make[1]: Leaving directory `/home/jason/moab/test/dist/test' make[1]: Entering directory `/home/jason/moab/test/dist/tools' list='iMesh mbchaco mbcoupler mbzoltan mbperf mcnpmit qvdual dagmc'; for subdir in $list; do \ if test "$subdir" = .; then :; else \ test -d "/home/jason/moab/test/dist/moab-3.99/tools/$subdir" \ || /bin/mkdir -p "/home/jason/moab/test/dist/moab-3.99/tools/$subdir" \ || exit 1; \ distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99/tools && pwd`; \ top_distdir=`CDPATH="${ZSH_VERSION+.}:" && cd /home/jason/moab/test/dist/moab-3.99 && pwd`; \ (cd $subdir && \ make \ top_distdir="$top_distdir" \ distdir="$distdir/$subdir" \ am__remove_distdir=: \ am__skip_length_check=: \ distdir) \ || exit 1; \ fi; \ done make[2]: Entering directory `/home/jason/moab/test/dist/tools/iMesh' echo '#include "MBCN_FCDefs.h"' > iMeshP_protos.h make[2]: *** No rule to make target `quad9.cub', needed by `distdir'. Stop. make[2]: *** Waiting for unfinished jobs.... echo '#ifdef FC_FUNC_' >> iMeshP_protos.h echo >> iMeshP_protos.h for func in `/bin/sed -n 's/^[[:space:]]*void[[:space:]][[:space:]]*iMeshP_$[a-z][_a-zA-Z0-9]*$[[:space:]]*(.*$/iMeshP_\1/p' ../../../src/tools/iMesh/iMeshP.h`; do \ lower=`echo $func | tr '[:upper:]' '[:lower:]'`; \ upper=`echo $func | tr '[:lower:]' '[:upper:]'`; \ echo "#define $func FC_FUNC_( $lower, $upper )" >> iMeshP_protos.h; \ done echo >> iMeshP_protos.h echo "#endif" >> iMeshP_protos.h make[2]: Leaving directory `/home/jason/moab/test/dist/tools/iMesh' make[1]: *** [distdir] Error 1 make[1]: Leaving directory `/home/jason/moab/test/dist/tools' make: *** [distdir] Error 1

2 1

MOAB check for *x86* failed.
by Nightly Test 28 Feb '09

28 Feb '09

/bin/sh ./config.status --recheck running CONFIG_SHELL=/bin/sh /bin/sh ../src/configure --enable-32bit --with-babel=/opt/babel-0.10.10-32-c2 --with-hdf5=/opt/hdf5-1.6.5-32-c2 --with-netcdf=/opt/netcdf-3.6.1-32-c2 --enable-imesh=nofortran --enable-debug --enable-release QTDIR=/usr/share/qt3 --no-create --no-recursion checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for a sed that does not truncate output... /bin/sed checking for style of include used by make... GNU checking for cc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... gcc3 checking how to run the C preprocessor... cc -E checking for CC... no checking for aCC... no checking for cxx... no checking for xlC_r... no checking for xlC... no checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for known C compilers... GNU checking for known compiler/OS combinations... GNU:x86_64 checking for known c++ compilers... GNU checking for known compiler/OS combinations... GNU:x86_64 checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognize dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... c++ -E checking the maximum length of command line arguments... 98304 checking command to parse /usr/bin/nm -B output from cc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC checking if cc PIC flag -fPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking whether the cc linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by c++... /usr/bin/ld -m elf_i386 checking if the linker (/usr/bin/ld -m elf_i386) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC checking if c++ PIC flag -fPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking whether the c++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate checking for gunzip... gunzip -c checking for gzip... (cached) gunzip -c checking for zcat... (cached) gunzip -c checking if C++ compiler supports template class specialization... yes checking if C++ compiler supports template function specialization... yes checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lgfortranbegin -lgfortran -lm checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... unknown configure: WARNING: unknown Fortran name-mangling scheme checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for size_t... yes checking for ptrdiff_t... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking for C++ unordered_map... std::tr1 checking for deflate in -lz... yes checking for SZ_Decompress in -lsz... no checking if HDF5 support is enabled... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fopen in -lhdf5... yes checking if NetCDF support is enabled... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking sstream.h usability... no checking sstream.h presence... no checking for sstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for netcdf.hh... yes checking for netcdf_c++ library... yes checking if mbconvert is to be built... yes checking if hexmodops is to be built... yes checking if mbchaco is to be built... no checking if mbperf is to be built... yes checking if qvdual is to be built... no checking if mbsize is to be built... yes checking if mbskin is to be built... yes checking if mbtagprop is to be built... yes checking if mcnpmit is to be built... no checking if mbcoupler is to be built... no checking if spheredecomp is to be built... yes checking if mbsurfplot is to be built... yes checking if mbzoltan is to be built... no checking if dagmc is to be built... yes checking if gsets is to be built... yes checking if iMesh support is to be built... yes checking for /opt/babel-0.10.10-32-c2/bin/babel... yes configure: creating ./config.status C: cc -Wall -pipe -pedantic -g -m32 -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map C++: c++ -Wall -pipe -pedantic -g -m32 -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map Fortran: gfortran -g -O2 -g /bin/sh ./config.status config.status: creating Makefile config.status: creating moab.make config.status: creating testdir.h config.status: creating parallel/Makefile config.status: creating mhdf/Makefile config.status: creating test/Makefile config.status: creating test/h5file/Makefile config.status: creating test/dual/Makefile config.status: creating test/obb/Makefile config.status: creating test/perf/Makefile config.status: creating tools/Makefile config.status: creating tools/iMesh/Makefile config.status: creating tools/iMesh/iMesh-Defs.inc config.status: creating tools/iMesh/SIDL/iMesh-SIDL-Defs.inc config.status: creating tools/iMesh/SIDL/Makefile config.status: creating tools/iMesh/SIDL/common.make config.status: creating tools/mbperf/Makefile config.status: creating tools/mbchaco/Makefile config.status: creating tools/mbcoupler/Makefile config.status: creating tools/mbzoltan/Config.moab config.status: creating tools/mbzoltan/Makefile config.status: creating tools/mcnpmit/Makefile config.status: creating tools/qvdual/Makefile config.status: creating tools/dagmc/Makefile config.status: creating tools/dagmc/dagmc.make config.status: creating doc/Makefile config.status: creating doxygen/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: creating MBVersion.h config.status: MBVersion.h is unchanged config.status: creating MBEntityHandle.h config.status: MBEntityHandle.h is unchanged config.status: creating MBCN_FCDefs.h config.status: MBCN_FCDefs.h is unchanged config.status: executing depfiles commands make all-recursive make[1]: Entering directory `/home/jason/moab/test/x86' Making all in mhdf make[2]: Entering directory `/home/jason/moab/test/x86/mhdf' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/jason/moab/test/x86/mhdf' Making all in . make[2]: Entering directory `/home/jason/moab/test/x86' make[2]: Leaving directory `/home/jason/moab/test/x86' Making all in test make[2]: Entering directory `/home/jason/moab/test/x86/test' Making all in dual make[3]: Entering directory `/home/jason/moab/test/x86/test/dual' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/x86/test/dual' Making all in h5file make[3]: Entering directory `/home/jason/moab/test/x86/test/h5file' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/x86/test/h5file' Making all in obb make[3]: Entering directory `/home/jason/moab/test/x86/test/obb' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/x86/test/obb' Making all in perf make[3]: Entering directory `/home/jason/moab/test/x86/test/perf' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/x86/test/perf' make[3]: Entering directory `/home/jason/moab/test/x86/test' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/jason/moab/test/x86/test' make[2]: Leaving directory `/home/jason/moab/test/x86/test' Making all in tools make[2]: Entering directory `/home/jason/moab/test/x86/tools' Making all in iMesh make[3]: Entering directory `/home/jason/moab/test/x86/tools/iMesh' make all-recursive make[4]: Entering directory `/home/jason/moab/test/x86/tools/iMesh' Making all in . make[5]: Entering directory `/home/jason/moab/test/x86/tools/iMesh' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh' Making all in SIDL make[5]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL' if test "xyes" = "xyes"; then \ (cd mserver && make -f ../../../../../src/tools/iMesh/SIDL/mserver.make all) && \ (cd Cclient && make -f ../../../../../src/tools/iMesh/SIDL/Cclient.make all) && \ (cd Fclient && make -f ../../../../../src/tools/iMesh/SIDL/Fclient.make all) ; \ fi make[6]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/mserver' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/mserver' make[6]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/Cclient' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/Cclient' make[6]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/Fclient' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/Fclient' make[5]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL' make[4]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh' make[3]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh' Making all in mbperf make[3]: Entering directory `/home/jason/moab/test/x86/tools/mbperf' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/x86/tools/mbperf' Making all in dagmc make[3]: Entering directory `/home/jason/moab/test/x86/tools/dagmc' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/x86/tools/dagmc' make[3]: Entering directory `/home/jason/moab/test/x86/tools' /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o hexmodops makeops.o ../libMOAB.la -lm c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../src/tools -I.. -I../../src -I.. -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT measure.o -MD -MP -MF .deps/measure.Tpo -c -o measure.o ../../src/tools/measure.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../src/tools -I.. -I../../src -I.. -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT size.o -MD -MP -MF .deps/size.Tpo -c -o size.o ../../src/tools/size.cpp /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o mbskin skin.o ../libMOAB.la -lm /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o mbtagprop parse.o propagate_tags.o ../libMOAB.la -lm c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../src/tools -I.. -I../../src -I.. -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT SphereDecomp.o -MD -MP -MF .deps/SphereDecomp.Tpo -c -o SphereDecomp.o ../../src/tools/SphereDecomp.cpp /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o mbsurfplot surfplot.o ../libMOAB.la -lm /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o mbgsets gsets.o ../libMOAB.la -lm mv -f .deps/measure.Tpo .deps/measure.Po c++ -Wall -pipe -pedantic -g -m32 -o hexmodops makeops.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o mbtagprop parse.o propagate_tags.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o mbsurfplot surfplot.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o mbskin skin.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o mbgsets gsets.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/SphereDecomp.Tpo .deps/SphereDecomp.Po /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o spheredecomp SphereDecomp.o main.o ../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o spheredecomp SphereDecomp.o main.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/size.Tpo .deps/size.Po /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o mbsize measure.o size.o ../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o mbsize measure.o size.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib make[3]: Leaving directory `/home/jason/moab/test/x86/tools' make[2]: Leaving directory `/home/jason/moab/test/x86/tools' Making all in doc make[2]: Entering directory `/home/jason/moab/test/x86/doc' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/jason/moab/test/x86/doc' Making all in doxygen make[2]: Entering directory `/home/jason/moab/test/x86/doxygen' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/jason/moab/test/x86/doxygen' make[1]: Leaving directory `/home/jason/moab/test/x86' Making check in mhdf make[1]: Entering directory `/home/jason/moab/test/x86/mhdf' make[1]: Nothing to be done for `check'. make[1]: Leaving directory `/home/jason/moab/test/x86/mhdf' Making check in . make[1]: Entering directory `/home/jason/moab/test/x86' make moab_test homxform_test scdseq_test tqdcfr test_adj seq_man_test geom_util_test xform_test obb_test vtk_test adaptive_kd_tree_tests bsp_tree_test file_options_test kd_tree_test var_len_test var_len_test_no_template tag_test mesh_set_test cub_file_test exodus_test mbcn_test kd_tree_tool kd_tree_time make[2]: Entering directory `/home/jason/moab/test/x86' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -m32 -MT scdseq_test.o -MD -MP -MF .deps/scdseq_test.Tpo -c -o scdseq_test.o ../src/scdseq_test.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -DTEST_TQDCFR -Wall -pipe -pedantic -g -m32 -Wall -pipe -pedantic -g -m32 -MT tqdcfr-Tqdcfr.o -MD -MP -MF .deps/tqdcfr-Tqdcfr.Tpo -c -o tqdcfr-Tqdcfr.o `test -f 'Tqdcfr.cpp' || echo '../src/'`Tqdcfr.cpp make[2]: `file_options_test' is up to date. make[2]: `var_len_test' is up to date. make[2]: `var_len_test_no_template' is up to date. c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -m32 -MT Test_MBMeshSet.o -MD -MP -MF .deps/Test_MBMeshSet.Tpo -c -o Test_MBMeshSet.o ../src/Test_MBMeshSet.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -m32 -MT cub_file_test.o -MD -MP -MF .deps/cub_file_test.Tpo -c -o cub_file_test.o ../src/cub_file_test.cc c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -m32 -MT exodus_test.o -MD -MP -MF .deps/exodus_test.Tpo -c -o exodus_test.o ../src/exodus_test.cc c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DSRCDIR=../src -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -m32 -MT mbcn_test-MBCN.o -MD -MP -MF .deps/mbcn_test-MBCN.Tpo -c -o mbcn_test-MBCN.o `test -f 'MBCN.cpp' || echo '../src/'`MBCN.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DSRCDIR=../src -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -m32 -MT mbcn_test-mbcn_test.o -MD -MP -MF .deps/mbcn_test-mbcn_test.Tpo -c -o mbcn_test-mbcn_test.o `test -f 'mbcn_test.cc' || echo '../src/'`mbcn_test.cc mv -f .deps/mbcn_test-MBCN.Tpo .deps/mbcn_test-MBCN.Po mv -f .deps/mbcn_test-mbcn_test.Tpo .deps/mbcn_test-mbcn_test.Po c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -m32 -MT MBTest.o -MD -MP -MF .deps/MBTest.Tpo -c -o MBTest.o ../src/MBTest.cpp /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -pedantic -g -m32 -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o homxform_test homxform_test-HomXform.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o test_adj test_adj.o ./libMOAB.la -lm mv -f .deps/exodus_test.Tpo .deps/exodus_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o seq_man_test TestTypeSequenceManager.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o test_adj test_adj.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/scdseq_test.Tpo .deps/scdseq_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o geom_util_test GeomUtilTests.o ./libMOAB.la -lm mv -f .deps/cub_file_test.Tpo .deps/cub_file_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -pedantic -g -m32 -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o xform_test xform_test-MBAffineXform.o ./libMOAB.la -lm c++ -DTEST -Wall -pipe -pedantic -g -m32 -Wall -pipe -pedantic -g -m32 -o homxform_test homxform_test-HomXform.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/Test_MBMeshSet.Tpo .deps/Test_MBMeshSet.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o obb_test OBBTest.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o seq_man_test TestTypeSequenceManager.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o vtk_test VtkTest.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o obb_test OBBTest.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o geom_util_test GeomUtilTests.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -DTEST -Wall -pipe -pedantic -g -m32 -Wall -pipe -pedantic -g -m32 -o xform_test xform_test-MBAffineXform.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o bsp_tree_test bsp_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o kd_tree_test kd_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o vtk_test VtkTest.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o bsp_tree_test bsp_tree_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o kd_tree_test kd_tree_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/tqdcfr-Tqdcfr.Tpo .deps/tqdcfr-Tqdcfr.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o tag_test TagTest.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o mesh_set_test Test_MBMeshSet.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o cub_file_test cub_file_test.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o mesh_set_test Test_MBMeshSet.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o tag_test TagTest.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o exodus_test exodus_test.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -lm c++ -Wall -pipe -pedantic -g -m32 -o cub_file_test cub_file_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o kd_tree_tool kd_tree_tool.o ./libMOAB.la -lm mv -f .deps/MBTest.Tpo .deps/MBTest.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o kd_tree_time kd_tree_time.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o kd_tree_tool kd_tree_tool.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o kd_tree_time kd_tree_time.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o moab_test MBTest.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o scdseq_test scdseq_test.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST_TQDCFR -Wall -pipe -pedantic -g -m32 -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o tqdcfr tqdcfr-Tqdcfr.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o moab_test MBTest.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o scdseq_test scdseq_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -DTEST_TQDCFR -Wall -pipe -pedantic -g -m32 -Wall -pipe -pedantic -g -m32 -o tqdcfr tqdcfr-Tqdcfr.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib make[2]: Leaving directory `/home/jason/moab/test/x86' make check-TESTS make[2]: Entering directory `/home/jason/moab/test/x86' Size of mConnMap = 10512 Size of mUpConnMap = 59904 Size of MBCN = 1 MB TEST PROGRAM: mb_adjacent_vertex_test: Success mb_adjacencies_test: Success mb_upward_adjacencies_test: Success mb_vertex_coordinate_test: Success mb_vertex_tag_test: Success mb_bar_connectivity_test: Success mb_tri_connectivity_test: Success mb_quad_connectivity_test: Success mb_tet_connectivity_test: Success mb_temporary_test: Success mb_hex_connectivity_test: Success mb_mesh_sets_set_test: Success mb_mesh_sets_list_test: Success mb_mesh_set_parent_child_test: Success mb_mesh_set_set_appends: Success mb_mesh_set_list_appends: Success mb_mesh_set_root_appends: Success mb_tags_test: Success mb_dense_tag_test: Success mb_sparse_tag_test: Success mb_write_mesh_test: Success mb_delete_mesh_test: Success mb_meshset_tracking_test: Success mb_higher_order_test: Success mb_bit_tags_test: Success mb_entity_conversion_test: Success mb_forced_adjacencies_test: Success mb_canon_number_test: Success mb_poly_test: Success mb_range_test: Success mb_topo_util_test: Success mb_split_test: Success mb_range_seq_intersect_test: Success mb_poly_adjacency_test: Success mb_memory_use_test: Success mb_merge_test: ---Starting Merge Tests--- ---Testing:"test/cell1.gen"--- Loaded test/cell1.gen ---Testing:"test/cell2.gen"--- Loaded test/cell2.gen num hexes = 28 fl = 68 rl = 0 nodes.size() = 72 ---Success--- coin_nodes.size() = 13 TIME: 1228.25 seconds. Success mb_stress_test: Beginning Stress Test . . . Reading elements Read 256000 entities in 8.7 seconds at 29425.3 elements per second. Transforming and copying elements Transformed and created 256000 entities in 75.29 seconds Creating meshset Created meshset with 512000 entities in 0 seconds Writing 512K element file . . . Wrote file with 512000 entities in 80.53 seconds Total time: 164.52 seconds. Success MB TEST SUMMARY: Number Tests: 37 Number Successful: 37 Number Failed: 0 PASS: moab_test All tests passed. PASS: homxform_test All tests passed. PASS: scdseq_test Usage: tqdcfr <cub_file_name> Success. Success. PASS: tqdcfr PASS: test_adj Running test_basic ... Running test_lower_bound ... Running test_upper_bound ... Running test_find ... Running test_get_entities ... Running test_insert_sequence_merge ... Running test_insert_sequence_nomerge ... Running test_remove_sequence ... Running test_replace_subsequence ... Running test_erase ... Running test_find_free_handle ... Running test_find_free_sequence ... Running test_is_free_sequence ... Running regression_svn1952 ... Running regression_svn1958 ... Running regression_svn1960 ... ALL TESTS PASSED PASS: seq_man_test Running test_box_plane_overlap ... Running test_box_linear_elem_overlap_tri ... Running test_box_linear_elem_overlap_tet ... Running test_box_linear_elem_overlap_hex ... Running test_box_tri_overlap ... Running test_box_tet_overlap ... Running test_box_hex_overlap ... Running test_ray_tri_intersect ... Running test_closest_location_on_tri ... Running test_closest_location_on_polygon ... Running test_segment_box_intersect ... Running test_closest_location_on_box ... PASS: geom_util_test PASS: xform_test PASS: obb_test Testing edge2... Testing edge3... Testing tri3... Testing tri6... Testing quad4... Testing quad8... Testing polygon... Testing tet4... Testing tet10... Testing hex8... Testing hex20... Testing wedge... Testing pyramid... Testing structured_points_2d... Testing structured_grid_2d... Testing rectilinear_grid_2d... Testing structured_points_3d... Testing structured_grid_3d... Testing rectilinear_grid_3d... Testing scalar_attrib_1_bit... Testing scalar_attrib_1_uchar... Testing scalar_attrib_1_char... Testing scalar_attrib_1_ushort... Testing scalar_attrib_1_short... Testing scalar_attrib_1_uint... Testing scalar_attrib_1_int... Testing scalar_attrib_1_ulong... Testing scalar_attrib_1_long... Testing scalar_attrib_1_float... Testing scalar_attrib_1_double... Testing scalar_attrib_4_bit... Testing scalar_attrib_4_uchar... Testing scalar_attrib_4_char... Testing scalar_attrib_4_ushort... Testing scalar_attrib_4_short... Testing scalar_attrib_4_uint... Testing scalar_attrib_4_int... Testing scalar_attrib_4_ulong... Testing scalar_attrib_4_long... Testing scalar_attrib_4_float... Testing scalar_attrib_4_double... Testing vector_attrib_bit... Testing vector_attrib_uchar... Testing vector_attrib_char... Testing vector_attrib_ushort... Testing vector_attrib_short... Testing vector_attrib_uint... Testing vector_attrib_int... Testing vector_attrib_ulong... Testing vector_attrib_long... Testing vector_attrib_float... Testing vector_attrib_double... Testing tensor_attrib_uchar... Testing tensor_attrib_char... Testing tensor_attrib_ushort... Testing tensor_attrib_short... Testing tensor_attrib_uint... Testing tensor_attrib_int... Testing tensor_attrib_ulong... Testing tensor_attrib_long... Testing tensor_attrib_float... Testing tensor_attrib_double... Testing subset... 63 tests passed PASS: vtk_test PASS: adaptive_kd_tree_tests Running test_iterator ... Running test_box_iterator ... Running test_tree_create ... Running test_box_tree_create ... Running test_leaf_containing_point_bounded_tree ... Running test_leaf_containing_point_unbounded_tree ... Running test_merge_leaf ... PASS: bsp_tree_test PASS: file_options_test HDF5-DIAG: Error detected in HDF5 library version: 1.6.5 thread 0. Back trace follows. #000: H5D.c line 1146 in H5Dopen(): not found major(15): Dataset interface minor(48): Object not found #001: H5G.c line 2296 in H5G_find(): object not found major(10): Symbol table layer minor(48): Object not found #002: H5G.c line 1495 in H5G_namei(): component not found major(10): Symbol table layer minor(48): Object not found #003: H5Gstab.c line 164 in H5G_stab_find(): not found major(10): Symbol table layer minor(48): Object not found #004: H5Gnode.c line 975 in H5G_node_found(): not found major(10): Symbol table layer minor(48): Object not found HDF5-DIAG: Error detected in HDF5 library version: 1.6.5 thread 0. Back trace follows. #000: H5D.c line 1146 in H5Dopen(): not found major(15): Dataset interface minor(48): Object not found #001: H5G.c line 2296 in H5G_find(): object not found major(10): Symbol table layer minor(48): Object not found #002: H5G.c line 1495 in H5G_namei(): component not found major(10): Symbol table layer minor(48): Object not found #003: H5Gstab.c line 164 in H5G_stab_find(): not found major(10): Symbol table layer minor(48): Object not found #004: H5Gnode.c line 975 in H5G_node_found(): not found major(10): Symbol table layer minor(48): Object not found PASS: kd_tree_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test_no_template Running test_create_tag ... Running test_invalid_tag_size ... Running test_get_set_sparse_int ... Running test_get_set_dense_int ... Running test_get_set_dense_double ... Running test_get_set_bit ... Running test_get_by_tag ... Running test_get_by_tag_value ... Running test_mesh_value ... Running test_get_pointers_sparse ... Running test_get_pointers_dense ... Running test_set_pointers_sparse ... Running test_set_pointers_dense ... Running test_get_entity_tags ... Running test_delete_sparse_tag ... Running test_delete_dense_tag ... Running test_delete_mesh_tag ... Running test_delete_sparse_data ... Running test_delete_dense_data ... Running test_delete_bit_data ... Running test_create_variable_length_tag ... Running test_get_set_variable_length_sparse ... Running test_get_set_variable_length_dense ... Running test_get_set_variable_length_mesh ... Running regression_one_entity_by_var_tag ... Running regression_tag_on_nonexistent_entity ... PASS: tag_test Running test_add_entities_ordered ... Running test_add_entities_set ... Running test_add_entities_ordered_tracking ... Running test_add_entities_set_tracking ... Running test_remove_entities_ordered ... Running test_remove_entities_set ... Running test_remove_entities_ordered_tracking ... Running test_remove_entities_set_tracking ... Running test_entities_by_type_ordered ... Running test_entities_by_type_set ... Running test_entities_by_dim_ordered ... Running test_entities_by_dim_set ... Running test_subtract_set_set ... Running test_subtract_set_ordered ... Running test_subtract_ordered_set ... Running test_subtract_ordered_ordered ... Running test_subtract_set_set_tracking ... Running test_subtract_set_ordered_tracking ... Running test_subtract_ordered_set_tracking ... Running test_subtract_ordered_ordered_tracking ... Running test_itersect_set_set ... Running test_itersect_set_ordered ... Running test_itersect_ordered_set ... Running test_itersect_ordered_ordered ... Running test_itersect_set_set_tracking ... Running test_itersect_set_ordered_tracking ... Running test_itersect_ordered_set_tracking ... Running test_itersect_ordered_ordered_tracking ... Running test_unite_set_set ... Running test_unite_set_ordered ... Running test_unite_ordered_set ... Running test_unite_ordered_ordered ... Running test_unite_set_set_tracking ... Running test_unite_set_ordered_tracking ... Running test_unite_ordered_set_tracking ... Running test_unite_ordered_ordered_tracking ... Running test_contains_entities_ordered ... Running test_contains_entities_set ... Running test_clear_ordered ... Running test_clear_set ... Running test_clear_ordered_tracking ... Running test_clear_set_tracking ... ALL TESTS PASSED PASS: mesh_set_test Running test_vertices ... Running test_edges ... Running test_quads ... Running test_hexes ... Running test_geometric_topology ... Running test_geometric_sets ... Running test_blocks ... Running test_side_sets ... Running test_node_sets ... Running test_file_set ... Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... Running test_multiple_files ... PASS: cub_file_test Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... PASS: exodus_test Running test_dimension_pair ... Running test_type_names ... Running test_dimension ... Running test_vertices_per_entity ... Running test_num_sub_entities ... Running test_sub_entity_type_vtx ... Running test_sub_entity_type_edge ... Running test_sub_entity_type_tri ... Running test_sub_entity_type_quad ... Running test_sub_entity_type_tet ... Running test_sub_entity_type_pyr ... Running test_sub_entity_type_pri ... Running test_sub_entity_type_knife ... Running test_sub_entity_type_hex ... Running test_sub_entity_indices_vtx ... Running test_sub_entity_indices_edge ... Running test_sub_entity_indices_tri ... Running test_sub_entity_indices_quad ... Running test_sub_entity_indices_tet ... Running test_sub_entity_indices_pyr ... Running test_sub_entity_indices_pri ... Running test_sub_entity_indices_hex ... Running test_side_number_tri ... Running test_side_number_quad ... Running test_side_number_tet ... Running test_side_number_pyr ... Running test_side_number_pri ... Running test_side_number_hex ... Running test_opposite_side_tri ... Running test_opposite_side_quad ... Running test_opposite_side_tet ... Running test_opposite_side_hex ... Running test_has_mid_nodes_edge ... Running test_has_mid_nodes_tri ... Running test_has_mid_nodes_quad ... Running test_has_mid_nodes_tet ... Running test_has_mid_nodes_pyr ... Running test_has_mid_nodes_pri ... Running test_has_mid_nodes_knife ... Running test_has_mid_nodes_hex ... Running test_sub_entity_nodes_tri_edges ... Running test_sub_entity_nodes_quad_edges ... Running test_sub_entity_nodes_tet_edges ... Running test_sub_entity_nodes_tet_faces ... Running test_sub_entity_nodes_pyr_edges ... Running test_sub_entity_nodes_pyr_faces ... Running test_sub_entity_nodes_pri_edges ... Running test_sub_entity_nodes_pri_faces ... Running test_sub_entity_nodes_kni_edges ... Running test_sub_entity_nodes_kni_faces ... Running test_sub_entity_nodes_hex_edges ... Running test_sub_entity_nodes_hex_faces ... Running test_ho_node_parent ... Running test_ho_node_index ... PASS: mbcn_test =================== All 21 tests passed =================== make[2]: Leaving directory `/home/jason/moab/test/x86' make[1]: Leaving directory `/home/jason/moab/test/x86' Making check in test make[1]: Entering directory `/home/jason/moab/test/x86/test' Making check in dual make[2]: Entering directory `/home/jason/moab/test/x86/test/dual' make dual_test make[3]: Entering directory `/home/jason/moab/test/x86/test/dual' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o dual_test dual_test.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o dual_test dual_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib make[3]: Leaving directory `/home/jason/moab/test/x86/test/dual' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/x86/test/dual' Usage: dual_test <mesh_file_name> PASS: dual_test ================== All 1 tests passed ================== make[3]: Leaving directory `/home/jason/moab/test/x86/test/dual' make[2]: Leaving directory `/home/jason/moab/test/x86/test/dual' Making check in h5file make[2]: Entering directory `/home/jason/moab/test/x86/test/h5file' make h5test h5legacy h5varlen h5sets_test h5regression make[3]: Entering directory `/home/jason/moab/test/x86/test/h5file' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT h5file_test.o -MD -MP -MF .deps/h5file_test.Tpo -c -o h5file_test.o ../../../src/test/h5file/h5file_test.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT h5legacy.o -MD -MP -MF .deps/h5legacy.Tpo -c -o h5legacy.o ../../../src/test/h5file/h5legacy.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT h5sets_test.o -MD -MP -MF .deps/h5sets_test.Tpo -c -o h5sets_test.o ../../../src/test/h5file/h5sets_test.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT h5regression.o -MD -MP -MF .deps/h5regression.Tpo -c -o h5regression.o ../../../src/test/h5file/h5regression.cpp /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o h5varlen h5varlen.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o h5varlen h5varlen.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/h5regression.Tpo .deps/h5regression.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o h5regression h5regression.o ../../libMOAB.la -lm mv -f .deps/h5sets_test.Tpo .deps/h5sets_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o h5sets_test h5sets_test.o ../../libMOAB.la -lm mv -f .deps/h5legacy.Tpo .deps/h5legacy.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o h5legacy h5legacy.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o h5sets_test h5sets_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/h5file_test.Tpo .deps/h5file_test.Po c++ -Wall -pipe -pedantic -g -m32 -o h5legacy h5legacy.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o h5regression h5regression.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o h5test h5file_test.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o h5test h5file_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib make[3]: Leaving directory `/home/jason/moab/test/x86/test/h5file' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/x86/test/h5file' creating... writing... reading... comparing... success! writing... clearing db... reading... comparing... success! cleaning up... done. PASS: h5test Running test_moab_v3_poly_format ... PASS: h5legacy Running test_var_length_no_data ... Running test_var_length_data ... Running test_var_length_big_data ... Running test_var_length_opaque ... Running test_var_length_mesh_data ... Running test_var_length_default_data ... Running test_var_length_mesh_opaque ... Running test_var_length_default_opaque ... Running test_var_length_handle_tag ... Running test_var_length_data_big ... PASS: h5varlen Running test_ranged_set_with_holes ... Running test_file_set ... PASS: h5sets_test Running test_write_invalid_elem ... PASS: h5regression ================== All 5 tests passed ================== make[3]: Leaving directory `/home/jason/moab/test/x86/test/h5file' make[2]: Leaving directory `/home/jason/moab/test/x86/test/h5file' Making check in obb make[2]: Entering directory `/home/jason/moab/test/x86/test/obb' make obb_test obb_time obb_tree_tool make[3]: Entering directory `/home/jason/moab/test/x86/test/obb' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../../src/test/obb -I../.. -I../../../src -I../.. -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT obb_test.o -MD -MP -MF .deps/obb_test.Tpo -c -o obb_test.o ../../../src/test/obb/obb_test.cpp /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o obb_time obb_time.o ../../libMOAB.la -lm /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o obb_tree_tool obb_tree_tool.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o obb_tree_tool obb_tree_tool.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o obb_time obb_time.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/obb_test.Tpo .deps/obb_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o obb_test obb_test.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o obb_test obb_test.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib make[3]: Leaving directory `/home/jason/moab/test/x86/test/obb' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/x86/test/obb' MOAB 3.99 (Alpha) No file(s) specified. Using default file "../../../src/test/3k-tri-sphere.vtk" Using default file "../../../src/test/3k-tri-cube.h5m" ../../../src/test/3k-tri-sphere.vtk ------ Building tree from 2970 2D elements No errors detected. ../../../src/test/3k-tri-cube.h5m ------ Building tree from 6 surfaces Built tree from 6 surfaces (2934 elements) No errors detected. PASS: obb_test ================== All 1 tests passed ================== make[3]: Leaving directory `/home/jason/moab/test/x86/test/obb' make[2]: Leaving directory `/home/jason/moab/test/x86/test/obb' Making check in perf make[2]: Entering directory `/home/jason/moab/test/x86/test/perf' make perf seqperf adj_time make[3]: Entering directory `/home/jason/moab/test/x86/test/perf' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -I. -I../../../src/test/perf -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/tools/iMesh -I../../tools/iMesh -I/opt/netcdf-3.6.1-32-c2/include -I/opt/hdf5-1.6.5-32-c2/include -isystem /opt/hdf5-1.6.5-32-c2/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -MT perf.o -MD -MP -MF .deps/perf.Tpo -c -o perf.o ../../../src/test/perf/perf.cpp /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o adj_time adj_time.o ../../libMOAB.la -lm /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o seqperf seqperf.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o adj_time adj_time.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib c++ -Wall -pipe -pedantic -g -m32 -o seqperf seqperf.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib mv -f .deps/perf.Tpo .deps/perf.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o perf perf.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -m32 -o perf perf.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib make[3]: Leaving directory `/home/jason/moab/test/x86/test/perf' make[2]: Leaving directory `/home/jason/moab/test/x86/test/perf' make[2]: Entering directory `/home/jason/moab/test/x86/test' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/home/jason/moab/test/x86/test' make[1]: Leaving directory `/home/jason/moab/test/x86/test' Making check in tools make[1]: Entering directory `/home/jason/moab/test/x86/tools' Making check in iMesh make[2]: Entering directory `/home/jason/moab/test/x86/tools/iMesh' make check-recursive make[3]: Entering directory `/home/jason/moab/test/x86/tools/iMesh' Making check in . make[4]: Entering directory `/home/jason/moab/test/x86/tools/iMesh' make testc_cbind make[5]: Entering directory `/home/jason/moab/test/x86/tools/iMesh' /bin/sh ../../libtool --tag=CC --mode=link cc -Wall -pipe -pedantic -g -m32 -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib -o testc_cbind testc_cbind.o libiMesh.la ../../libMOAB.la -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/32 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/32 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib32 -L/lib/../lib32 -L/usr/lib/../lib32 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lm -lgcc_s -lc -lgcc_s -lm cc -Wall -pipe -pedantic -g -m32 -o testc_cbind testc_cbind.o -L/opt/netcdf-3.6.1-32-c2/lib -L/opt/hdf5-1.6.5-32-c2/lib ./.libs/libiMesh.a /home/jason/moab/test/x86/.libs/libMOAB.a ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /opt/hdf5-1.6.5-32-c2/lib/libhdf5.so -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/32 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib32 -L/lib/../lib32 -L/usr/lib/../lib32 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lc -lgcc_s -lm -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib -Wl,--rpath -Wl,/opt/hdf5-1.6.5-32-c2/lib make[5]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh' make check-TESTS make[5]: Entering directory `/home/jason/moab/test/x86/tools/iMesh' Usage: ./testc_cbind <mesh_filename> No file specified. Defaulting to: ../../../src/tools/iMesh/brick.vtk TSTT TEST PROGRAM: load_mesh: Success topology_adjacency_test: Success entity_connectivity_test: Success vertex_coordinates_test: Success topology_dimension_test: Success entity_sets_test: Success vertex_tag_test: Success entityset_tag_test: Success mesh_tag_test: Success TSTT TEST SUMMARY: Number Tests: 9 Number Successful: 9 Number Not Implemented: 0 Number Failed: 0 PASS: testc_cbind ================== All 1 tests passed ================== make[5]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh' make[4]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh' Making check in SIDL make[4]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL' make[5]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL' /bin/sh ../../../libtool --tag=CXX --mode=compile c++ -I/opt/babel-0.10.10-32-c2/include -Imserver -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -c -o testcxx.lo ../../../../src/tools/iMesh/SIDL/testcxx.cpp if test "xyes" = "xyes"; then \ (cd mserver && make -f ../../../../../src/tools/iMesh/SIDL/mserver.make all) && \ (cd Cclient && make -f ../../../../../src/tools/iMesh/SIDL/Cclient.make all) && \ (cd Fclient && make -f ../../../../../src/tools/iMesh/SIDL/Fclient.make all) ; \ fi make[6]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/mserver' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/mserver' make[6]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/Cclient' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/Cclient' make[6]: Entering directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/Fclient' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL/Fclient' c++ -I/opt/babel-0.10.10-32-c2/include -Imserver -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -m32 -c ../../../../src/tools/iMesh/SIDL/testcxx.cpp -o testcxx.o ../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool entity_connectivity_test(iMesh::Mesh&)’: ../../../../src/tools/iMesh/SIDL/testcxx.cpp:429: error: ‘class iMesh::Mesh’ has no member named ‘getVtxCoordIndex’ ../../../../src/tools/iMesh/SIDL/testcxx.cpp:470: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(NULL, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’ mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&) ../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool entity_sets_subtest(iMesh::Mesh&, bool, int)’: ../../../../src/tools/iMesh/SIDL/testcxx.cpp:503: error: ISO C++ forbids variable length array ‘es_array’ ../../../../src/tools/iMesh/SIDL/testcxx.cpp:504: error: ISO C++ forbids variable length array ‘number_array’ ../../../../src/tools/iMesh/SIDL/testcxx.cpp:1046: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(NULL, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’ mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&) ../../../../src/tools/iMesh/SIDL/testcxx.cpp:1096: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(void*&, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’ mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&) ../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool vertex_coordinates_test(iMesh::Mesh&)’: ../../../../src/tools/iMesh/SIDL/testcxx.cpp:1180: error: ‘class iMesh::Mesh’ has no member named ‘getAllVtxCoords’ make[5]: *** [testcxx.lo] Error 1 make[5]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL' make[4]: *** [check] Error 2 make[4]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh/SIDL' make[3]: *** [check-recursive] Error 1 make[3]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh' make[2]: *** [check] Error 2 make[2]: Leaving directory `/home/jason/moab/test/x86/tools/iMesh' make[1]: *** [check-recursive] Error 1 make[1]: Leaving directory `/home/jason/moab/test/x86/tools' make: *** [check-recursive] Error 1

1 0

MOAB check for *AMD64* failed.
by Nightly Test 28 Feb '09

28 Feb '09

/bin/sh ./config.status --recheck running CONFIG_SHELL=/bin/sh /bin/sh ../src/configure --enable-debug --enable-release --with-babel=/opt/babel-0.10.10-64-c2 --with-cgm=/home/jason/cgm/test/cubit QTDIR=/usr/share/qt3 --no-create --no-recursion checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for a sed that does not truncate output... /bin/sed checking for style of include used by make... GNU checking for cc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... gcc3 checking how to run the C preprocessor... cc -E checking for CC... no checking for aCC... no checking for cxx... no checking for xlC_r... no checking for xlC... no checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for known C compilers... GNU checking for known compiler/OS combinations... GNU:x86_64 checking for known c++ compilers... GNU checking for known compiler/OS combinations... GNU:x86_64 checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognize dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... c++ -E checking the maximum length of command line arguments... 98304 checking command to parse /usr/bin/nm -B output from cc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC checking if cc PIC flag -fPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking whether the cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by c++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC checking if c++ PIC flag -fPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate checking for gunzip... gunzip -c checking for gzip... (cached) gunzip -c checking for zcat... (cached) gunzip -c checking if C++ compiler supports template class specialization... yes checking if C++ compiler supports template function specialization... yes checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lgfortranbegin -lgfortran -lm checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for size_t... yes checking for ptrdiff_t... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking for C++ unordered_map... std::tr1 checking for deflate in -lz... yes checking for SZ_Decompress in -lsz... no checking if HDF5 support is enabled... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fopen in -lhdf5... yes checking if NetCDF support is enabled... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking sstream.h usability... no checking sstream.h presence... no checking for sstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for netcdf.hh... yes checking for netcdf_c++ library... yes checking if mbconvert is to be built... yes checking if hexmodops is to be built... yes checking if mbchaco is to be built... no checking if mbperf is to be built... yes checking if qvdual is to be built... no checking if mbsize is to be built... yes checking if mbskin is to be built... yes checking if mbtagprop is to be built... yes checking if mcnpmit is to be built... no checking if mbcoupler is to be built... no checking if spheredecomp is to be built... yes checking if mbsurfplot is to be built... yes checking if mbzoltan is to be built... no checking if dagmc is to be built... yes checking if gsets is to be built... yes checking if iMesh support is to be built... yes checking for /home/jason/cgm/test/cubit/lib/cgm.make... no checking for /home/jason/cgm/test/cubit/cgm.make... yes checking Checking for GeometryQueryTool::ray_fire(RefFace*,...)... no checking for /opt/babel-0.10.10-64-c2/bin/babel... yes configure: creating ./config.status C: cc -Wall -pipe -pedantic -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map C++: c++ -Wall -pipe -pedantic -g -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map Fortran: gfortran -g -O2 -g /bin/sh ./config.status config.status: creating Makefile config.status: creating moab.make config.status: creating testdir.h config.status: creating parallel/Makefile config.status: creating mhdf/Makefile config.status: creating test/Makefile config.status: creating test/h5file/Makefile config.status: creating test/dual/Makefile config.status: creating test/obb/Makefile config.status: creating test/perf/Makefile config.status: creating tools/Makefile config.status: creating tools/iMesh/Makefile config.status: creating tools/iMesh/iMesh-Defs.inc config.status: creating tools/iMesh/SIDL/iMesh-SIDL-Defs.inc config.status: creating tools/iMesh/SIDL/Makefile config.status: creating tools/iMesh/SIDL/common.make config.status: creating tools/mbperf/Makefile config.status: creating tools/mbchaco/Makefile config.status: creating tools/mbcoupler/Makefile config.status: creating tools/mbzoltan/Config.moab config.status: creating tools/mbzoltan/Makefile config.status: creating tools/mcnpmit/Makefile config.status: creating tools/qvdual/Makefile config.status: creating tools/dagmc/Makefile config.status: creating tools/dagmc/dagmc.make config.status: creating doc/Makefile config.status: creating doxygen/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: creating MBVersion.h config.status: MBVersion.h is unchanged config.status: creating MBEntityHandle.h config.status: MBEntityHandle.h is unchanged config.status: creating MBCN_FCDefs.h config.status: MBCN_FCDefs.h is unchanged config.status: executing depfiles commands make all-recursive make[1]: Entering directory `/home/jason/moab/test/AMD64' Making all in mhdf make[2]: Entering directory `/home/jason/moab/test/AMD64/mhdf' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/jason/moab/test/AMD64/mhdf' Making all in . make[2]: Entering directory `/home/jason/moab/test/AMD64' make[2]: Leaving directory `/home/jason/moab/test/AMD64' Making all in test make[2]: Entering directory `/home/jason/moab/test/AMD64/test' Making all in dual make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' Making all in h5file make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' Making all in obb make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' Making all in perf make[3]: Entering directory `/home/jason/moab/test/AMD64/test/perf' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[3]: Entering directory `/home/jason/moab/test/AMD64/test' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/test' make[2]: Leaving directory `/home/jason/moab/test/AMD64/test' Making all in tools make[2]: Entering directory `/home/jason/moab/test/AMD64/tools' Making all in iMesh make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make all-recursive make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Making all in . make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' Making all in SIDL make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL' if test "xyes" = "xyes"; then \ (cd mserver && make -f ../../../../../src/tools/iMesh/SIDL/mserver.make all) && \ (cd Cclient && make -f ../../../../../src/tools/iMesh/SIDL/Cclient.make all) && \ (cd Fclient && make -f ../../../../../src/tools/iMesh/SIDL/Fclient.make all) ; \ fi make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/mserver' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/mserver' make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Cclient' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Cclient' make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Fclient' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Fclient' make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL' make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' Making all in mbperf make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/mbperf' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/mbperf' Making all in dagmc make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/dagmc' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/dagmc' make[3]: Entering directory `/home/jason/moab/test/AMD64/tools' /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o hexmodops makeops.o ../libMOAB.la -lm c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../src/tools -I.. -I../../src -I.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT measure.o -MD -MP -MF .deps/measure.Tpo -c -o measure.o ../../src/tools/measure.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../src/tools -I.. -I../../src -I.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT size.o -MD -MP -MF .deps/size.Tpo -c -o size.o ../../src/tools/size.cpp /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o mbskin skin.o ../libMOAB.la -lm /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o mbtagprop parse.o propagate_tags.o ../libMOAB.la -lm c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../src/tools -I.. -I../../src -I.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT SphereDecomp.o -MD -MP -MF .deps/SphereDecomp.Tpo -c -o SphereDecomp.o ../../src/tools/SphereDecomp.cpp /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o mbsurfplot surfplot.o ../libMOAB.la -lm /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o mbgsets gsets.o ../libMOAB.la -lm mv -f .deps/measure.Tpo .deps/measure.Po c++ -Wall -pipe -pedantic -g -o hexmodops makeops.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o mbtagprop parse.o propagate_tags.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o mbgsets gsets.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o mbsurfplot surfplot.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o mbskin skin.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm mv -f .deps/SphereDecomp.Tpo .deps/SphereDecomp.Po /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o spheredecomp SphereDecomp.o main.o ../libMOAB.la -lm mv -f .deps/size.Tpo .deps/size.Po /bin/sh ../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o mbsize measure.o size.o ../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o spheredecomp SphereDecomp.o main.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o mbsize measure.o size.o ../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools' make[2]: Leaving directory `/home/jason/moab/test/AMD64/tools' Making all in doc make[2]: Entering directory `/home/jason/moab/test/AMD64/doc' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/jason/moab/test/AMD64/doc' Making all in doxygen make[2]: Entering directory `/home/jason/moab/test/AMD64/doxygen' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/jason/moab/test/AMD64/doxygen' make[1]: Leaving directory `/home/jason/moab/test/AMD64' Making check in mhdf make[1]: Entering directory `/home/jason/moab/test/AMD64/mhdf' make[1]: Nothing to be done for `check'. make[1]: Leaving directory `/home/jason/moab/test/AMD64/mhdf' Making check in . make[1]: Entering directory `/home/jason/moab/test/AMD64' make moab_test homxform_test scdseq_test tqdcfr test_adj seq_man_test geom_util_test xform_test obb_test vtk_test adaptive_kd_tree_tests bsp_tree_test file_options_test kd_tree_test var_len_test var_len_test_no_template tag_test mesh_set_test cub_file_test exodus_test mbcn_test kd_tree_tool kd_tree_time make[2]: Entering directory `/home/jason/moab/test/AMD64' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -MT scdseq_test.o -MD -MP -MF .deps/scdseq_test.Tpo -c -o scdseq_test.o ../src/scdseq_test.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -DTEST_TQDCFR -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -MT tqdcfr-Tqdcfr.o -MD -MP -MF .deps/tqdcfr-Tqdcfr.Tpo -c -o tqdcfr-Tqdcfr.o `test -f 'Tqdcfr.cpp' || echo '../src/'`Tqdcfr.cpp make[2]: `file_options_test' is up to date. make[2]: `var_len_test' is up to date. make[2]: `var_len_test_no_template' is up to date. c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -MT Test_MBMeshSet.o -MD -MP -MF .deps/Test_MBMeshSet.Tpo -c -o Test_MBMeshSet.o ../src/Test_MBMeshSet.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -MT cub_file_test.o -MD -MP -MF .deps/cub_file_test.Tpo -c -o cub_file_test.o ../src/cub_file_test.cc c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -MT exodus_test.o -MD -MP -MF .deps/exodus_test.Tpo -c -o exodus_test.o ../src/exodus_test.cc c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DSRCDIR=../src -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -MT mbcn_test-MBCN.o -MD -MP -MF .deps/mbcn_test-MBCN.Tpo -c -o mbcn_test-MBCN.o `test -f 'MBCN.cpp' || echo '../src/'`MBCN.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DSRCDIR=../src -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -MT mbcn_test-mbcn_test.o -MD -MP -MF .deps/mbcn_test-mbcn_test.Tpo -c -o mbcn_test-mbcn_test.o `test -f 'mbcn_test.cc' || echo '../src/'`mbcn_test.cc mv -f .deps/mbcn_test-mbcn_test.Tpo .deps/mbcn_test-mbcn_test.Po c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -DIS_BUILDING_MB -I. -I../src -I. -I../src/mhdf/include -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DSRCDIR=../src -Wall -pipe -pedantic -g -MT MBTest.o -MD -MP -MF .deps/MBTest.Tpo -c -o MBTest.o ../src/MBTest.cpp mv -f .deps/mbcn_test-MBCN.Tpo .deps/mbcn_test-MBCN.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -o homxform_test homxform_test-HomXform.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o test_adj test_adj.o ./libMOAB.la -lm mv -f .deps/exodus_test.Tpo .deps/exodus_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o seq_man_test TestTypeSequenceManager.o ./libMOAB.la -lm mv -f .deps/scdseq_test.Tpo .deps/scdseq_test.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o geom_util_test GeomUtilTests.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o seq_man_test TestTypeSequenceManager.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm mv -f .deps/cub_file_test.Tpo .deps/cub_file_test.Po c++ -DTEST -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -o homxform_test homxform_test-HomXform.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -o xform_test xform_test-MBAffineXform.o ./libMOAB.la -lm mv -f .deps/Test_MBMeshSet.Tpo .deps/Test_MBMeshSet.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o obb_test OBBTest.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o test_adj test_adj.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o vtk_test VtkTest.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o ./libMOAB.la -lm c++ -DTEST -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -o xform_test xform_test-MBAffineXform.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o geom_util_test GeomUtilTests.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o obb_test OBBTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o bsp_tree_test bsp_tree_test.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o kd_tree_test kd_tree_test.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o vtk_test VtkTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o bsp_tree_test bsp_tree_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o adaptive_kd_tree_tests adaptive_kd_tree_tests.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o kd_tree_test kd_tree_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm mv -f .deps/tqdcfr-Tqdcfr.Tpo .deps/tqdcfr-Tqdcfr.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o tag_test TagTest.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o mesh_set_test Test_MBMeshSet.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o cub_file_test cub_file_test.o ./libMOAB.la -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o exodus_test exodus_test.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o tag_test TagTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o exodus_test exodus_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm mv -f .deps/MBTest.Tpo .deps/MBTest.Po /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -lm c++ -Wall -pipe -pedantic -g -o mesh_set_test Test_MBMeshSet.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o kd_tree_tool kd_tree_tool.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o cub_file_test cub_file_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o kd_tree_time kd_tree_time.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o mbcn_test mbcn_test-MBCN.o mbcn_test-mbcn_test.o -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o moab_test MBTest.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o kd_tree_tool kd_tree_tool.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o kd_tree_time kd_tree_time.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o moab_test MBTest.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o scdseq_test scdseq_test.o ./libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o scdseq_test scdseq_test.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm /bin/sh ./libtool --tag=CXX --mode=link c++ -DTEST_TQDCFR -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -o tqdcfr tqdcfr-Tqdcfr.o ./libMOAB.la -lm c++ -DTEST_TQDCFR -Wall -pipe -pedantic -g -Wall -pipe -pedantic -g -o tqdcfr tqdcfr-Tqdcfr.o ./.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm make[2]: Leaving directory `/home/jason/moab/test/AMD64' make check-TESTS make[2]: Entering directory `/home/jason/moab/test/AMD64' Size of mConnMap = 10512 Size of mUpConnMap = 59904 Size of MBCN = 1 MB TEST PROGRAM: mb_adjacent_vertex_test: Success mb_adjacencies_test: Success mb_upward_adjacencies_test: Success mb_vertex_coordinate_test: Success mb_vertex_tag_test: Success mb_bar_connectivity_test: Success mb_tri_connectivity_test: Success mb_quad_connectivity_test: Success mb_tet_connectivity_test: Success mb_temporary_test: Success mb_hex_connectivity_test: Success mb_mesh_sets_set_test: Success mb_mesh_sets_list_test: Success mb_mesh_set_parent_child_test: Success mb_mesh_set_set_appends: Success mb_mesh_set_list_appends: Success mb_mesh_set_root_appends: Success mb_tags_test: Success mb_dense_tag_test: Success mb_sparse_tag_test: Success mb_write_mesh_test: Success mb_delete_mesh_test: Success mb_meshset_tracking_test: Success mb_higher_order_test: Success mb_bit_tags_test: Success mb_entity_conversion_test: Success mb_forced_adjacencies_test: Success mb_canon_number_test: Success mb_poly_test: Success mb_range_test: Success mb_topo_util_test: Success mb_split_test: Success mb_range_seq_intersect_test: Success mb_poly_adjacency_test: Success mb_memory_use_test: Success mb_merge_test: ---Starting Merge Tests--- ---Testing:"test/cell1.gen"--- Loaded test/cell1.gen ---Testing:"test/cell2.gen"--- Loaded test/cell2.gen num hexes = 28 fl = 68 rl = 0 nodes.size() = 72 ---Success--- coin_nodes.size() = 13 TIME: 1226.3 seconds. Success mb_stress_test: Beginning Stress Test . . . Reading elements Read 256000 entities in 12.59 seconds at 20333.6 elements per second. Transforming and copying elements Transformed and created 256000 entities in 103.06 seconds Creating meshset Created meshset with 512000 entities in 0 seconds Writing 512K element file . . . Wrote file with 512000 entities in 141.71 seconds Total time: 257.37 seconds. Success MB TEST SUMMARY: Number Tests: 37 Number Successful: 37 Number Failed: 0 PASS: moab_test All tests passed. PASS: homxform_test All tests passed. PASS: scdseq_test Usage: tqdcfr <cub_file_name> Success. Success. PASS: tqdcfr PASS: test_adj Running test_basic ... Running test_lower_bound ... Running test_upper_bound ... Running test_find ... Running test_get_entities ... Running test_insert_sequence_merge ... Running test_insert_sequence_nomerge ... Running test_remove_sequence ... Running test_replace_subsequence ... Running test_erase ... Running test_find_free_handle ... Running test_find_free_sequence ... Running test_is_free_sequence ... Running regression_svn1952 ... Running regression_svn1958 ... Running regression_svn1960 ... ALL TESTS PASSED PASS: seq_man_test Running test_box_plane_overlap ... Running test_box_linear_elem_overlap_tri ... Running test_box_linear_elem_overlap_tet ... Running test_box_linear_elem_overlap_hex ... Running test_box_tri_overlap ... Running test_box_tet_overlap ... Running test_box_hex_overlap ... Running test_ray_tri_intersect ... Running test_closest_location_on_tri ... Running test_closest_location_on_polygon ... Running test_segment_box_intersect ... Running test_closest_location_on_box ... PASS: geom_util_test PASS: xform_test PASS: obb_test Testing edge2... Testing edge3... Testing tri3... Testing tri6... Testing quad4... Testing quad8... Testing polygon... Testing tet4... Testing tet10... Testing hex8... Testing hex20... Testing wedge... Testing pyramid... Testing structured_points_2d... Testing structured_grid_2d... Testing rectilinear_grid_2d... Testing structured_points_3d... Testing structured_grid_3d... Testing rectilinear_grid_3d... Testing scalar_attrib_1_bit... Testing scalar_attrib_1_uchar... Testing scalar_attrib_1_char... Testing scalar_attrib_1_ushort... Testing scalar_attrib_1_short... Testing scalar_attrib_1_uint... Testing scalar_attrib_1_int... Testing scalar_attrib_1_ulong... Testing scalar_attrib_1_long... Testing scalar_attrib_1_float... Testing scalar_attrib_1_double... Testing scalar_attrib_4_bit... Testing scalar_attrib_4_uchar... Testing scalar_attrib_4_char... Testing scalar_attrib_4_ushort... Testing scalar_attrib_4_short... Testing scalar_attrib_4_uint... Testing scalar_attrib_4_int... Testing scalar_attrib_4_ulong... Testing scalar_attrib_4_long... Testing scalar_attrib_4_float... Testing scalar_attrib_4_double... Testing vector_attrib_bit... Testing vector_attrib_uchar... Testing vector_attrib_char... Testing vector_attrib_ushort... Testing vector_attrib_short... Testing vector_attrib_uint... Testing vector_attrib_int... Testing vector_attrib_ulong... Testing vector_attrib_long... Testing vector_attrib_float... Testing vector_attrib_double... Testing tensor_attrib_uchar... Testing tensor_attrib_char... Testing tensor_attrib_ushort... Testing tensor_attrib_short... Testing tensor_attrib_uint... Testing tensor_attrib_int... Testing tensor_attrib_ulong... Testing tensor_attrib_long... Testing tensor_attrib_float... Testing tensor_attrib_double... Testing subset... 63 tests passed PASS: vtk_test PASS: adaptive_kd_tree_tests Running test_iterator ... Running test_box_iterator ... Running test_tree_create ... Running test_box_tree_create ... Running test_leaf_containing_point_bounded_tree ... Running test_leaf_containing_point_unbounded_tree ... Running test_merge_leaf ... PASS: bsp_tree_test PASS: file_options_test HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 thread 67385840. Back trace follows. #000: ../../../src/H5D.c line 1169 in H5Dopen(): not found major(15): Dataset interface minor(48): Object not found #001: ../../../src/H5G.c line 1783 in H5G_find(): object not found major(10): Symbol table layer minor(48): Object not found #002: ../../../src/H5Gtraverse.c line 395 in H5G_namei(): component not found major(10): Symbol table layer minor(48): Object not found #003: ../../../src/H5Gstab.c line 161 in H5G_stab_find(): not found major(10): Symbol table layer minor(48): Object not found #004: ../../../src/H5Gnode.c line 954 in H5G_node_found(): not found major(10): Symbol table layer minor(48): Object not found HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 thread 67385840. Back trace follows. #000: ../../../src/H5D.c line 1169 in H5Dopen(): not found major(15): Dataset interface minor(48): Object not found #001: ../../../src/H5G.c line 1783 in H5G_find(): object not found major(10): Symbol table layer minor(48): Object not found #002: ../../../src/H5Gtraverse.c line 395 in H5G_namei(): component not found major(10): Symbol table layer minor(48): Object not found #003: ../../../src/H5Gstab.c line 161 in H5G_stab_find(): not found major(10): Symbol table layer minor(48): Object not found #004: ../../../src/H5Gnode.c line 954 in H5G_node_found(): not found major(10): Symbol table layer minor(48): Object not found PASS: kd_tree_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test Running test_valid_struct ... Running test_inline ... Running test_non_inline ... Running test_resize_ii ... Running test_resize_in ... Running test_resize_ni ... Running test_resize_nn ... PASS: var_len_test_no_template Running test_create_tag ... Running test_invalid_tag_size ... Running test_get_set_sparse_int ... Running test_get_set_dense_int ... Running test_get_set_dense_double ... Running test_get_set_bit ... Running test_get_by_tag ... Running test_get_by_tag_value ... Running test_mesh_value ... Running test_get_pointers_sparse ... Running test_get_pointers_dense ... Running test_set_pointers_sparse ... Running test_set_pointers_dense ... Running test_get_entity_tags ... Running test_delete_sparse_tag ... Running test_delete_dense_tag ... Running test_delete_mesh_tag ... Running test_delete_sparse_data ... Running test_delete_dense_data ... Running test_delete_bit_data ... Running test_create_variable_length_tag ... Running test_get_set_variable_length_sparse ... Running test_get_set_variable_length_dense ... Running test_get_set_variable_length_mesh ... Running regression_one_entity_by_var_tag ... Running regression_tag_on_nonexistent_entity ... PASS: tag_test Running test_add_entities_ordered ... Running test_add_entities_set ... Running test_add_entities_ordered_tracking ... Running test_add_entities_set_tracking ... Running test_remove_entities_ordered ... Running test_remove_entities_set ... Running test_remove_entities_ordered_tracking ... Running test_remove_entities_set_tracking ... Running test_entities_by_type_ordered ... Running test_entities_by_type_set ... Running test_entities_by_dim_ordered ... Running test_entities_by_dim_set ... Running test_subtract_set_set ... Running test_subtract_set_ordered ... Running test_subtract_ordered_set ... Running test_subtract_ordered_ordered ... Running test_subtract_set_set_tracking ... Running test_subtract_set_ordered_tracking ... Running test_subtract_ordered_set_tracking ... Running test_subtract_ordered_ordered_tracking ... Running test_itersect_set_set ... Running test_itersect_set_ordered ... Running test_itersect_ordered_set ... Running test_itersect_ordered_ordered ... Running test_itersect_set_set_tracking ... Running test_itersect_set_ordered_tracking ... Running test_itersect_ordered_set_tracking ... Running test_itersect_ordered_ordered_tracking ... Running test_unite_set_set ... Running test_unite_set_ordered ... Running test_unite_ordered_set ... Running test_unite_ordered_ordered ... Running test_unite_set_set_tracking ... Running test_unite_set_ordered_tracking ... Running test_unite_ordered_set_tracking ... Running test_unite_ordered_ordered_tracking ... Running test_contains_entities_ordered ... Running test_contains_entities_set ... Running test_clear_ordered ... Running test_clear_set ... Running test_clear_ordered_tracking ... Running test_clear_set_tracking ... ALL TESTS PASSED PASS: mesh_set_test Running test_vertices ... Running test_edges ... Running test_quads ... Running test_hexes ... Running test_geometric_topology ... Running test_geometric_sets ... Running test_blocks ... Running test_side_sets ... Running test_node_sets ... Running test_file_set ... Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... Running test_multiple_files ... PASS: cub_file_test Running test_tri6 ... Running test_tri7 ... Running test_quad5 ... Running test_quad8 ... Running test_quad9 ... Running test_tet8 ... Running test_tet10 ... Running test_tet14 ... Running test_hex9 ... Running test_hex20 ... Running test_hex27 ... PASS: exodus_test Running test_dimension_pair ... Running test_type_names ... Running test_dimension ... Running test_vertices_per_entity ... Running test_num_sub_entities ... Running test_sub_entity_type_vtx ... Running test_sub_entity_type_edge ... Running test_sub_entity_type_tri ... Running test_sub_entity_type_quad ... Running test_sub_entity_type_tet ... Running test_sub_entity_type_pyr ... Running test_sub_entity_type_pri ... Running test_sub_entity_type_knife ... Running test_sub_entity_type_hex ... Running test_sub_entity_indices_vtx ... Running test_sub_entity_indices_edge ... Running test_sub_entity_indices_tri ... Running test_sub_entity_indices_quad ... Running test_sub_entity_indices_tet ... Running test_sub_entity_indices_pyr ... Running test_sub_entity_indices_pri ... Running test_sub_entity_indices_hex ... Running test_side_number_tri ... Running test_side_number_quad ... Running test_side_number_tet ... Running test_side_number_pyr ... Running test_side_number_pri ... Running test_side_number_hex ... Running test_opposite_side_tri ... Running test_opposite_side_quad ... Running test_opposite_side_tet ... Running test_opposite_side_hex ... Running test_has_mid_nodes_edge ... Running test_has_mid_nodes_tri ... Running test_has_mid_nodes_quad ... Running test_has_mid_nodes_tet ... Running test_has_mid_nodes_pyr ... Running test_has_mid_nodes_pri ... Running test_has_mid_nodes_knife ... Running test_has_mid_nodes_hex ... Running test_sub_entity_nodes_tri_edges ... Running test_sub_entity_nodes_quad_edges ... Running test_sub_entity_nodes_tet_edges ... Running test_sub_entity_nodes_tet_faces ... Running test_sub_entity_nodes_pyr_edges ... Running test_sub_entity_nodes_pyr_faces ... Running test_sub_entity_nodes_pri_edges ... Running test_sub_entity_nodes_pri_faces ... Running test_sub_entity_nodes_kni_edges ... Running test_sub_entity_nodes_kni_faces ... Running test_sub_entity_nodes_hex_edges ... Running test_sub_entity_nodes_hex_faces ... Running test_ho_node_parent ... Running test_ho_node_index ... PASS: mbcn_test =================== All 21 tests passed =================== make[2]: Leaving directory `/home/jason/moab/test/AMD64' make[1]: Leaving directory `/home/jason/moab/test/AMD64' Making check in test make[1]: Entering directory `/home/jason/moab/test/AMD64/test' Making check in dual make[2]: Entering directory `/home/jason/moab/test/AMD64/test/dual' make dual_test make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual' /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o dual_test dual_test.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o dual_test dual_test.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/AMD64/test/dual' Usage: dual_test <mesh_file_name> PASS: dual_test ================== All 1 tests passed ================== make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' make[2]: Leaving directory `/home/jason/moab/test/AMD64/test/dual' Making check in h5file make[2]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' make h5test h5legacy h5varlen h5sets_test h5regression make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT h5file_test.o -MD -MP -MF .deps/h5file_test.Tpo -c -o h5file_test.o ../../../src/test/h5file/h5file_test.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT h5legacy.o -MD -MP -MF .deps/h5legacy.Tpo -c -o h5legacy.o ../../../src/test/h5file/h5legacy.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT h5sets_test.o -MD -MP -MF .deps/h5sets_test.Tpo -c -o h5sets_test.o ../../../src/test/h5file/h5sets_test.cpp c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/h5file -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT h5regression.o -MD -MP -MF .deps/h5regression.Tpo -c -o h5regression.o ../../../src/test/h5file/h5regression.cpp /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o h5varlen h5varlen.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o h5varlen h5varlen.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm mv -f .deps/h5regression.Tpo .deps/h5regression.Po mv -f .deps/h5sets_test.Tpo .deps/h5sets_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o h5regression h5regression.o ../../libMOAB.la -lm /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o h5sets_test h5sets_test.o ../../libMOAB.la -lm mv -f .deps/h5legacy.Tpo .deps/h5legacy.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o h5legacy h5legacy.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o h5regression h5regression.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o h5sets_test h5sets_test.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm mv -f .deps/h5file_test.Tpo .deps/h5file_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o h5test h5file_test.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o h5legacy h5legacy.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o h5test h5file_test.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/AMD64/test/h5file' creating... writing... reading... comparing... success! writing... clearing db... reading... comparing... success! cleaning up... done. PASS: h5test Running test_moab_v3_poly_format ... PASS: h5legacy Running test_var_length_no_data ... Running test_var_length_data ... Running test_var_length_big_data ... Running test_var_length_opaque ... Running test_var_length_mesh_data ... Running test_var_length_default_data ... Running test_var_length_mesh_opaque ... Running test_var_length_default_opaque ... Running test_var_length_handle_tag ... Running test_var_length_data_big ... PASS: h5varlen Running test_ranged_set_with_holes ... Running test_file_set ... PASS: h5sets_test Running test_write_invalid_elem ... PASS: h5regression ================== All 5 tests passed ================== make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' make[2]: Leaving directory `/home/jason/moab/test/AMD64/test/h5file' Making check in obb make[2]: Entering directory `/home/jason/moab/test/AMD64/test/obb' make obb_test obb_time obb_tree_tool make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/obb -I../.. -I../../../src -I../.. -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT obb_test.o -MD -MP -MF .deps/obb_test.Tpo -c -o obb_test.o ../../../src/test/obb/obb_test.cpp /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o obb_time obb_time.o ../../libMOAB.la -lm /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o obb_tree_tool obb_tree_tool.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o obb_time obb_time.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o obb_tree_tool obb_tree_tool.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm mv -f .deps/obb_test.Tpo .deps/obb_test.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o obb_test obb_test.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o obb_test obb_test.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' make check-TESTS make[3]: Entering directory `/home/jason/moab/test/AMD64/test/obb' MOAB 3.99 (Alpha) No file(s) specified. Using default file "../../../src/test/3k-tri-sphere.vtk" Using default file "../../../src/test/3k-tri-cube.h5m" ../../../src/test/3k-tri-sphere.vtk ------ Building tree from 2970 2D elements No errors detected. ../../../src/test/3k-tri-cube.h5m ------ Building tree from 6 surfaces Built tree from 6 surfaces (2934 elements) No errors detected. PASS: obb_test ================== All 1 tests passed ================== make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' make[2]: Leaving directory `/home/jason/moab/test/AMD64/test/obb' Making check in perf make[2]: Entering directory `/home/jason/moab/test/AMD64/test/perf' make perf seqperf adj_time make[3]: Entering directory `/home/jason/moab/test/AMD64/test/perf' c++ -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHDF5_FILE -DNETCDF_FILE -DCGM -I. -I../../../src/test/perf -I../.. -I../../../src -I../../../src/mhdf/include -I../.. -I../../../src/tools/iMesh -I../../tools/iMesh -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -MT perf.o -MD -MP -MF .deps/perf.Tpo -c -o perf.o ../../../src/test/perf/perf.cpp /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o seqperf seqperf.o ../../libMOAB.la -lm /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o adj_time adj_time.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o adj_time adj_time.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm c++ -Wall -pipe -pedantic -g -o seqperf seqperf.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm mv -f .deps/perf.Tpo .deps/perf.Po /bin/sh ../../libtool --tag=CXX --mode=link c++ -Wall -pipe -pedantic -g -o perf perf.o ../../libMOAB.la -lm c++ -Wall -pipe -pedantic -g -o perf perf.o ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -lm make[3]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[2]: Leaving directory `/home/jason/moab/test/AMD64/test/perf' make[2]: Entering directory `/home/jason/moab/test/AMD64/test' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/home/jason/moab/test/AMD64/test' make[1]: Leaving directory `/home/jason/moab/test/AMD64/test' Making check in tools make[1]: Entering directory `/home/jason/moab/test/AMD64/tools' Making check in iMesh make[2]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make check-recursive make[3]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Making check in . make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' make testc_cbind make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' /bin/sh ../../libtool --tag=CC --mode=link cc -Wall -pipe -pedantic -g -o testc_cbind testc_cbind.o libiMesh.la ../../libMOAB.la -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lm -lgcc_s -lc -lgcc_s -lm cc -Wall -pipe -pedantic -g -o testc_cbind testc_cbind.o ./.libs/libiMesh.a /home/jason/moab/test/AMD64/.libs/libMOAB.a ../../.libs/libMOAB.a -lnetcdf_c++ -lnetcdf /usr/lib/libhdf5.so -lpthread -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../.. -lstdc++ -lc -lgcc_s -lm make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make check-TESTS make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh' Usage: ./testc_cbind <mesh_filename> No file specified. Defaulting to: ../../../src/tools/iMesh/brick.vtk TSTT TEST PROGRAM: load_mesh: Success topology_adjacency_test: Success entity_connectivity_test: Success vertex_coordinates_test: Success topology_dimension_test: Success entity_sets_test: Success vertex_tag_test: Success entityset_tag_test: Success mesh_tag_test: Success TSTT TEST SUMMARY: Number Tests: 9 Number Successful: 9 Number Not Implemented: 0 Number Failed: 0 PASS: testc_cbind ================== All 1 tests passed ================== make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' Making check in SIDL make[4]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL' make[5]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL' /bin/sh ../../../libtool --tag=CXX --mode=compile c++ -I/opt/babel-0.10.10-64-c2/include -Imserver -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -c -o testcxx.lo ../../../../src/tools/iMesh/SIDL/testcxx.cpp if test "xyes" = "xyes"; then \ (cd mserver && make -f ../../../../../src/tools/iMesh/SIDL/mserver.make all) && \ (cd Cclient && make -f ../../../../../src/tools/iMesh/SIDL/Cclient.make all) && \ (cd Fclient && make -f ../../../../../src/tools/iMesh/SIDL/Fclient.make all) ; \ fi make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/mserver' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/mserver' make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Cclient' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Cclient' make[6]: Entering directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Fclient' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL/Fclient' c++ -I/opt/babel-0.10.10-64-c2/include -Imserver -DVALGRIND -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -Wall -pipe -pedantic -g -c ../../../../src/tools/iMesh/SIDL/testcxx.cpp -o testcxx.o ../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool entity_connectivity_test(iMesh::Mesh&)’: ../../../../src/tools/iMesh/SIDL/testcxx.cpp:429: error: ‘class iMesh::Mesh’ has no member named ‘getVtxCoordIndex’ ../../../../src/tools/iMesh/SIDL/testcxx.cpp:470: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(NULL, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’ mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&) ../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool entity_sets_subtest(iMesh::Mesh&, bool, int)’: ../../../../src/tools/iMesh/SIDL/testcxx.cpp:503: error: ISO C++ forbids variable length array ‘es_array’ ../../../../src/tools/iMesh/SIDL/testcxx.cpp:504: error: ISO C++ forbids variable length array ‘number_array’ ../../../../src/tools/iMesh/SIDL/testcxx.cpp:1046: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(NULL, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’ mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&) ../../../../src/tools/iMesh/SIDL/testcxx.cpp:1096: error: no matching function for call to ‘iMesh::Mesh::getAdjEntities(void*&, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int&, sidl::array<int>&, int&, sidl::array<int>&, int&)’ mserver/iMesh_Mesh.hh:358: note: candidates are: void iMesh::Mesh::getAdjEntities(void*, iBase::EntityType, iMesh::EntityTopology, iBase::EntityType, sidl::array<void*>&, int32_t&, sidl::array<int>&, int32_t&) ../../../../src/tools/iMesh/SIDL/testcxx.cpp: In function ‘bool vertex_coordinates_test(iMesh::Mesh&)’: ../../../../src/tools/iMesh/SIDL/testcxx.cpp:1180: error: ‘class iMesh::Mesh’ has no member named ‘getAllVtxCoords’ make[5]: *** [testcxx.lo] Error 1 make[5]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL' make[4]: *** [check] Error 2 make[4]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh/SIDL' make[3]: *** [check-recursive] Error 1 make[3]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[2]: *** [check] Error 2 make[2]: Leaving directory `/home/jason/moab/test/AMD64/tools/iMesh' make[1]: *** [check-recursive] Error 1 make[1]: Leaving directory `/home/jason/moab/test/AMD64/tools' make: *** [check-recursive] Error 1

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r2669 - in MOAB/trunk: . tools/iMesh
by kraftche＠cae.wisc.edu 27 Feb '09

27 Feb '09

Author: kraftche Date: 2009-02-27 11:35:12 -0600 (Fri, 27 Feb 2009) New Revision: 2669 Modified: MOAB/trunk/Makefile.am MOAB/trunk/tools/iMesh/Makefile.am Log: fix 'make dist' Modified: MOAB/trunk/Makefile.am =================================================================== --- MOAB/trunk/Makefile.am 2009-02-27 17:30:52 UTC (rev 2668) +++ MOAB/trunk/Makefile.am 2009-02-27 17:35:12 UTC (rev 2669) @@ -359,7 +359,7 @@ mbcn_test_SOURCES = MBCN.hpp MBCN.cpp mbcn_test.cc mbcn_test_CPPFLAGS = -DSRCDIR=$(srcdir) # define anything to work around build issue -EXTRA_DIST = test.cub quad9.cub hex27.cub +EXTRA_DIST = test.cub # Other files to clean up (e.g. output from tests) MOSTLYCLEANFILES = dumped_acis.sat tree.h5m Modified: MOAB/trunk/tools/iMesh/Makefile.am =================================================================== --- MOAB/trunk/tools/iMesh/Makefile.am 2009-02-27 17:30:52 UTC (rev 2668) +++ MOAB/trunk/tools/iMesh/Makefile.am 2009-02-27 17:35:12 UTC (rev 2669) @@ -15,7 +15,7 @@ # stuff for c test program check_PROGRAMS = testc_cbind -EXTRA_DIST = brick.vtk +EXTRA_DIST = brick.vtk quad9.cub libiMesh_la_SOURCES = \ iMesh_MOAB.cpp \

1 0

nightly tests
by Jason Kraftcheck 27 Feb '09

27 Feb '09

Nightly tests of MOAB and CGM have not been running for some time now*. If have corrected this. - jason * Actually, they were running fine but the mail system on my workstation was silently discarding all outgoing mail because the configuration was broken by a software upgrade.

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r2666 - MOAB/trunk
by kraftche＠cae.wisc.edu 26 Feb '09

26 Feb '09

Author: kraftche Date: 2009-02-26 18:24:58 -0600 (Thu, 26 Feb 2009) New Revision: 2666 Modified: MOAB/trunk/MBSkinner.cpp Log: fix skinner bugs Modified: MOAB/trunk/MBSkinner.cpp =================================================================== --- MOAB/trunk/MBSkinner.cpp 2009-02-26 22:24:14 UTC (rev 2665) +++ MOAB/trunk/MBSkinner.cpp 2009-02-27 00:24:58 UTC (rev 2666) @@ -455,7 +455,7 @@ if( type != tmp_type ) continue; - result = thisMB->get_connectivity(*jter, tmp, num_verts); + result = thisMB->get_connectivity(*jter, tmp, num_verts, true); assert(MB_SUCCESS == result && num_verts >= num_nodes); if(connectivity_match(conn, tmp, num_verts, direct)) { @@ -657,7 +657,8 @@ assert(MB_SUCCESS == result); // add node handles to boundary_node range - std::copy(conn.begin(), conn.end(), mb_range_inserter(boundary_nodes)); + std::copy(conn.begin(), conn.begin()+MBCN::VerticesPerEntity(type), + mb_range_inserter(boundary_nodes)); type = thisMB->type_from_handle(*iter);

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r2665 - MOAB/trunk/tools/mbperf
by kraftche＠cae.wisc.edu 26 Feb '09

26 Feb '09

Author: kraftche Date: 2009-02-26 16:24:14 -0600 (Thu, 26 Feb 2009) New Revision: 2665 Modified: MOAB/trunk/tools/mbperf/Makefile.am Log: I can't reproduce the problem that Paul and others are seeing because for some reason my version of automake puts generated source files such as iMesh_protos.h in the source tree, but hopefully this fixed the problem Modified: MOAB/trunk/tools/mbperf/Makefile.am =================================================================== --- MOAB/trunk/tools/mbperf/Makefile.am 2009-02-26 22:09:10 UTC (rev 2664) +++ MOAB/trunk/tools/mbperf/Makefile.am 2009-02-26 22:24:14 UTC (rev 2665) @@ -21,6 +21,7 @@ -I$(top_srcdir)/tools/iMesh \ -I$(top_srcdir)/tools/iMesh/SIDL/mserver \ -I../iMesh/SIDL/mserver \ + -I../iMesh \ $(babel_includes) bin_PROGRAMS = mbperf $(babel_progs) $(imesh_progs)

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r2664 - MOAB/trunk/tools/dagmc
by kraftche＠cae.wisc.edu 26 Feb '09

26 Feb '09

Author: kraftche Date: 2009-02-26 16:09:10 -0600 (Thu, 26 Feb 2009) New Revision: 2664 Modified: MOAB/trunk/tools/dagmc/Makefile.am Log: only try to build cub2h5m if compiling with CGM Modified: MOAB/trunk/tools/dagmc/Makefile.am =================================================================== --- MOAB/trunk/tools/dagmc/Makefile.am 2009-02-26 21:13:13 UTC (rev 2663) +++ MOAB/trunk/tools/dagmc/Makefile.am 2009-02-26 22:09:10 UTC (rev 2664) @@ -17,6 +17,7 @@ libdagmc_la_SOURCES += cgm2moab.cc +noinst_PROGRAMS = cub2h5m bin_PROGRAMS = cgm2moab cgm2moab_SOURCES = main.cc cubfile.c cgm2moab_LDFLAGS = $(CGM_LTFLAGS) @@ -33,7 +34,6 @@ cfgdir = $(libdir) cfg_DATA = dagmc.make -noinst_PROGRAMS = cub2h5m TESTS = test_geom check_PROGRAMS = $(TESTS) pt_vol_test test_geom_SOURCES = test_geom.cc

1 0

r2663 - MOAB/trunk
by kraftche＠cae.wisc.edu 26 Feb '09

26 Feb '09

Author: kraftche Date: 2009-02-26 15:13:13 -0600 (Thu, 26 Feb 2009) New Revision: 2663 Modified: MOAB/trunk/MBSkinner.cpp Log: fix skinnig of higher-order elements Modified: MOAB/trunk/MBSkinner.cpp =================================================================== --- MOAB/trunk/MBSkinner.cpp 2009-02-26 21:12:47 UTC (rev 2662) +++ MOAB/trunk/MBSkinner.cpp 2009-02-26 21:13:13 UTC (rev 2663) @@ -280,7 +280,7 @@ for(iter = source_entities.begin(); iter != end_iter; ++iter) { // get the connectivity of this entity - result = thisMB->get_connectivity(*iter, tmp_conn, num_nodes, true); + result = thisMB->get_connectivity(*iter, tmp_conn, num_nodes, false); if (MB_SUCCESS == result) conn = tmp_conn; else { @@ -288,7 +288,7 @@ // which doesn't store connectivity explicitly; use a connect // vector instead tmp_conn_vec.clear(); - result = thisMB->get_connectivity(&(*iter), 1, tmp_conn_vec, true); + result = thisMB->get_connectivity(&(*iter), 1, tmp_conn_vec, false); if (MB_SUCCESS != result) return MB_FAILURE; conn = &tmp_conn_vec[0]; num_nodes = tmp_conn_vec.size(); @@ -327,8 +327,15 @@ if (dum_sub_elems.empty()) { // need to create one MBEntityHandle tmphndl=0; - result = thisMB->create_element(conn_map->target_type[i], sub_conn, num_sub_nodes, - tmphndl); + int indices[MB_MAX_SUB_ENTITY_VERTICES]; + MBEntityType new_type; + int num_new_nodes; + MBCN::SubEntityNodeIndices( type, num_nodes, mTargetDim, i, new_type, num_new_nodes, indices ); + for(int j=0; j<num_new_nodes; j++) + sub_conn[j] = conn[indices[j]]; + + result = thisMB->create_element(new_type, sub_conn, + num_new_nodes, tmphndl); forward_target_entities.insert(tmphndl); } else { @@ -358,7 +365,13 @@ if(match == 0) { MBEntityHandle tmphndl=0; - result = thisMB->create_element(conn_map->target_type[i], sub_conn, num_sub_nodes, + int indices[MB_MAX_SUB_ENTITY_VERTICES]; + MBEntityType new_type; + int num_new_nodes; + MBCN::SubEntityNodeIndices( type, num_nodes, mTargetDim, i, new_type, num_new_nodes, indices ); + for(int j=0; j<num_new_nodes; j++) + sub_conn[j] = conn[indices[j]]; + result = thisMB->create_element(new_type, sub_conn, num_new_nodes, tmphndl); assert(MB_SUCCESS == result); add_adjacency(tmphndl, sub_conn, num_sub_nodes); @@ -640,7 +653,7 @@ { // get the connectivity of this entity conn.clear(); - result = thisMB->get_connectivity(&(*iter), 1, conn, true); + result = thisMB->get_connectivity(&(*iter), 1, conn, false); assert(MB_SUCCESS == result); // add node handles to boundary_node range @@ -665,8 +678,15 @@ if(match == 0) { MBEntityHandle tmphndl=0; - result = thisMB->create_element(conn_map->target_type[i], sub_conn, - num_sub_nodes, tmphndl); + int indices[MB_MAX_SUB_ENTITY_VERTICES]; + MBEntityType new_type; + int num_new_nodes; + MBCN::SubEntityNodeIndices( type, conn.size(), 1, i, new_type, num_new_nodes, indices ); + for(int j=0; j<num_new_nodes; j++) + sub_conn[j] = conn[indices[j]]; + + result = thisMB->create_element(new_type, sub_conn, + num_new_nodes, tmphndl); assert(MB_SUCCESS == result); add_adjacency(tmphndl, sub_conn, num_sub_nodes); //target_entities.insert(tmphndl);

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