Send the output from otool -L libdeal_II.g.9.3.0.dylib otool -L libslepc.3.15.dylib otool -L libpetsc.3.15.dylib You will need to find the directories of these libraries and include them in the otool command.
On Oct 25, 2021, at 10:00 AM, Ahmed Galal <[email protected]> wrote:
Hello,
I tried to run Step-17 in Dealii, a PETSc Dependenant software, but I got the following error. Given I have two versions of PETSc. I use the other one for another software.
I googled and found that the issue is solved by commenting out the line "ADD_FLAGS(DEAL_II_LINKER_FLAGS "-fuse-ld=gold")" in "cmake/checks/check_01_compiler_features.cmake", make test, worked. --- https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1https://groups.goo... <https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1https://groups.google.com/u/1/g/dealii/c/JxUOyd_4eFM?pli=1> ---
Any suggestions for how to get around that error "PETSc Error --- Application was linked against both OpenMPI and MPICH based MPI libraries and will not run correctly" in the new version of DealII.9.3 as I could not find a .cmake similar file to edit?
Thanks in advance! Ahmed
Error: ------------------------
PETSc Error --- Application was linked against both OpenMPI and MPICH based MPI libraries and will not run correctly
[----] *** Process received signal ***
[----] Signal: Segmentation fault: 11 (11)
[----] Signal code: Address not mapped (1)
[----] Failing at address: 0x68
[----] [ 0] 0 libsystem_platform.dylib 0x00007fff2041cd7d _sigtramp + 29
[----] [ 1] 0 ??? 0x0000000060b9d791 0x0 + 1622792081
[----] [ 2] 0 libsystem_c.dylib 0x00007fff202edfcc vfprintf_l + 28
[----] [ 3] 0 libsystem_c.dylib 0x00007fff202e69a2 fprintf + 160
[----] [ 4] 0 libpetsc.3.15.dylib 0x000000014c224f0d PetscVFPrintfDefault + 685
[ 5] 0 libpetsc.3.15.dylib 0x000000014c2280d6 PetscFPrintf + 726
[ 6] 0 libpetsc.3.15.dylib 0x000000014c21d537 PetscErrorPrintfDefault + 375
[ 7] 0 libpetsc.3.15.dylib 0x000000014c21d66a PetscTraceBackErrorHandler + 154
[ 8] 0 libpetsc.3.15.dylib 0x000000014c21713c PetscError + 716
[ 9] 0 libslepc.3.15.dylib 0x000000014bc9cc8c SlepcInitialize + 428
[10] 0 libdeal_II.g.9.3.0.dylib 0x00000001151ae627 _ZN6dealii9Utilities3MPI16MPI_InitFinalizeC2ERiRPPcj + 135
[11] 0 libdeal_II.g.9.3.0.dylib 0x00000001151aece9 _ZN6dealii9Utilities3MPI16MPI_InitFinalizeC1ERiRPPcj + 9
[12] 0 step-17 0x000000010f244892 main + 82
[13] 0 libdyld.dylib 0x00007fff203f2f3d start + 1
[14] 0 ??? 0x0000000000000001 0x0 + 1
*** End of error message ***
make[3]: *** [CMakeFiles/run] Segmentation fault: 11
make[2]: *** [CMakeFiles/run.dir/all] Error 2
make[1]: *** [CMakeFiles/run.dir/rule] Error 2
make: *** [run] Error 2
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