On Tue, Jul 10, 2012 at 12:04 PM, Matthew Knepley <[email protected]> wrote:
On Tue, Jul 10, 2012 at 11:59 AM, Thomas Hisch <[email protected]> wrote:
Thx for the hint.
Should PETSc-dev in principle work with gcc-4.7, because I get the following error while building petsc:
Jed is fixing that now. C++ compilers are extraordinarily dumb, and cannot cast a 'volatile std::complex' to 'std::complex'. Should be ready soon.
http://petsc.cs.iit.edu/petsc/petsc-dev/rev/664ec55a8ab3
Matt
----------------------------------------- Using C/C++ compile: mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -fPIC -I/home/thomas/local/src/petsc-dev/include -I/home/thomas/local/src/petsc-dev/arch-linux2-cxx-release/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -D__INSDIR__=./ Using Fortran compile: mpif90 -c -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -I/home/thomas/local/src/petsc-dev/include -I/home/thomas/local/src/petsc-dev/arch-linux2-cxx-release/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi ----------------------------------------- Using C/C++ linker: mpicxx Using C/C++ flags: -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 Using Fortran linker: mpif90 Using Fortran flags: -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument ----------------------------------------- Using libraries: -Wl,-rpath,/home/thomas/local/src/petsc-dev/arch-linux2-cxx-release/lib -L/home/thomas/local/src/petsc-dev/arch-linux2-cxx-release/lib -lpetsc -lX11 -Wl,-rpath,/home/thomas/local/src/petsc-dev/arch-linux2-cxx-release/lib -lfftw3_mpi -lfftw3 -lpthread -Wl,-rpath,/opt/intel/composer_xe_2011_sp1.11.339/mkl/lib/intel64 -L/opt/intel/composer_xe_2011_sp1.11.339/mkl/lib/intel64 -llapack -lblas -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/opt/intel/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/opt/intel/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2011_sp1.10.319/compiler/lib/intel64 -L/opt/intel/composer_xe_2011_sp1.10.319/compiler/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2011_sp1.10.319/ipp/lib/intel64 -L/opt/intel/composer_xe_2011_sp1.10.319/ipp/lib/intel64 -Wl,-rpath,/opt/intel/composer_xe_2011_sp1.10.319/mkl/lib/intel64 -L/opt/intel/composer_xe_2011_sp1.10.319/mkl/lib/intel64
-Wl,-rpath,/opt/intel/composer_xe_2011_sp1.10.319/tbb/lib/intel64/cc4.1.0_libc2.4_kernel2.6.16.21
-L/opt/intel/composer_xe_2011_sp1.10.319/tbb/lib/intel64/cc4.1.0_libc2.4_kernel2.6.16.21 -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lgfortran -lm -lm -lquadmath -lm -lmpi_cxx -lstdc++ -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl ------------------------------------------ Using mpiexec: mpiexec ========================================== Building PETSc using CMake with 5 build threads ========================================== Re-run cmake file: Makefile older than: ../CMakeLists.txt -- Configuring done -- Generating done -- Build files have been written to: /home/thomas/local/src/petsc-dev/arch-linux2-cxx-release Scanning dependencies of target petsc [ 0%] Building Fortran object CMakeFiles/petsc.dir/src/sys/f90-mod/petscsysmod.F.o [ 0%] Building Fortran object CMakeFiles/petsc.dir/src/vec/f90-mod/petscvecmod.F.o [ 1%] Building Fortran object CMakeFiles/petsc.dir/src/mat/f90-mod/petscmatmod.F.o [ 1%] Building Fortran object CMakeFiles/petsc.dir/src/dm/f90-mod/petscdmmod.F.o [ 1%] Building Fortran object CMakeFiles/petsc.dir/src/ksp/f90-mod/petsckspmod.F.o [ 1%] Building Fortran object CMakeFiles/petsc.dir/src/snes/f90-mod/petscsnesmod.F.o [ 2%] [ 2%] [ 2%] [ 2%] [ 2%] Building Fortran object CMakeFiles/petsc.dir/src/ts/f90-mod/petsctsmod.F.o Building CXX object CMakeFiles/petsc.dir/src/sys/verbose/verboseinfo.c.o Building CXX object CMakeFiles/petsc.dir/src/sys/viewer/interface/view.c.o Building CXX object CMakeFiles/petsc.dir/src/sys/viewer/interface/viewregall.c.o Building CXX object CMakeFiles/petsc.dir/src/sys/viewer/interface/flush.c.o [ 2%] In file included from /home/thomas/local/src/petsc-dev/include/petscsys.h:1536:0, from /home/thomas/local/src/petsc-dev/src/sys/verbose/verboseinfo.c:6: /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h: In function ‘PetscBool PetscCheckPointer(const void*, PetscDataType)’: /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h:197:60: error: no matching function for call to ‘std::complex<double>::complex(volatile PetscScalar&)’ /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h:197:60: note: candidates are: In file included from /home/thomas/local/src/petsc-dev/include/petscmath.h:60:0, from /home/thomas/local/src/petsc-dev/include/petscsys.h:337, from /home/thomas/local/src/petsc-dev/src/sys/verbose/verboseinfo.c:6: /usr/include/c++/4.7/complex:1205:26: note: std::complex<double>::complex(const std::complex<float>&) /usr/include/c++/4.7/complex:1205:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘const std::complex<float>&’ /usr/include/c++/4.7/complex:1195:26: note: std::complex<double>::complex(double, double) /usr/include/c++/4.7/complex:1195:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘double’ /usr/include/c++/4.7/complex:1193:26: note: std::complex<double>::complex(std::complex<double>::_ComplexT) /usr/include/c++/4.7/complex:1193:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘std::complex<double>::_ComplexT {aka __complex__ double}’ /usr/include/c++/4.7/complex:1188:12: note: std::complex<double>::complex(const std::complex<double>&) /usr/include/c++/4.7/complex:1188:12: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘const std::complex<double>&’ In file included from /home/thomas/local/src/petsc-dev/include/petscsys.h:1536:0, from /home/thomas/local/src/petsc-dev/include/petsc-private/viewerimpl.h:5, from /home/thomas/local/src/petsc-dev/src/sys/viewer/interface/flush.c:2: /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h: In function ‘PetscBool PetscCheckPointer(const void*, PetscDataType)’: /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h:197:60: error: no matching function for call to ‘std::complex<double>::complex(volatile PetscScalar&)’ /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h:197:60: note: candidates are: In file included from /home/thomas/local/src/petsc-dev/include/petscmath.h:60:0, from /home/thomas/local/src/petsc-dev/include/petscsys.h:337, from /home/thomas/local/src/petsc-dev/include/petsc-private/viewerimpl.h:5, from /home/thomas/local/src/petsc-dev/src/sys/viewer/interface/flush.c:2: /usr/include/c++/4.7/complex:1205:26: note: std::complex<double>::complex(const std::complex<float>&) /usr/include/c++/4.7/complex:1205:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘const std::complex<float>&’ /usr/include/c++/4.7/complex:1195:26: note: std::complex<double>::complex(double, double) /usr/include/c++/4.7/complex:1195:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘double’ /usr/include/c++/4.7/complex:1193:26: note: std::complex<double>::complex(std::complex<double>::_ComplexT) /usr/include/c++/4.7/complex:1193:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘std::complex<double>::_ComplexT {aka __complex__ double}’ /usr/include/c++/4.7/complex:1188:12: note: std::complex<double>::complex(const std::complex<double>&) /usr/include/c++/4.7/complex:1188:12: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘const std::complex<double>&’ Building CXX object CMakeFiles/petsc.dir/src/sys/viewer/interface/viewreg.c.o In file included from /home/thomas/local/src/petsc-dev/include/petscsys.h:1536:0, from /home/thomas/local/src/petsc-dev/include/petsc-private/viewerimpl.h:5, from /home/thomas/local/src/petsc-dev/src/sys/viewer/interface/viewregall.c:2: /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h: In function ‘PetscBool PetscCheckPointer(const void*, PetscDataType)’: /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h:197:60: error: no matching function for call to ‘std::complex<double>::complex(volatile PetscScalar&)’ /home/thomas/local/src/petsc-dev/include/petsc-private/petscimpl.h:197:60: note: candidates are: In file included from /home/thomas/local/src/petsc-dev/include/petscmath.h:60:0, from /home/thomas/local/src/petsc-dev/include/petscsys.h:337, from /home/thomas/local/src/petsc-dev/include/petsc-private/viewerimpl.h:5, from /home/thomas/local/src/petsc-dev/src/sys/viewer/interface/viewregall.c:2: /usr/include/c++/4.7/complex:1205:26: note: std::complex<double>::complex(const std::complex<float>&) /usr/include/c++/4.7/complex:1205:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘const std::complex<float>&’ /usr/include/c++/4.7/complex:1195:26: note: std::complex<double>::complex(double, double) /usr/include/c++/4.7/complex:1195:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘double’ /usr/include/c++/4.7/complex:1193:26: note: std::complex<double>::complex(std::complex<double>::_ComplexT) /usr/include/c++/4.7/complex:1193:26: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘std::complex<double>::_ComplexT {aka __complex__ double}’ /usr/include/c++/4.7/complex:1188:12: note: std::complex<double>::complex(const std::complex<double>&) /usr/include/c++/4.7/complex:1188:12: note: no known conversion for argument 1 from ‘volatile PetscScalar {aka volatile std::complex<double>}’ to ‘const std::complex<double>&’ ......
I called configure with:
./configure --with-c++-support=1 --with-scalar-type=complex --with-x11=0 --with-clanguage=cxx
--with-blas-lapack-dir=/opt/intel/composer_xe_2011_sp1.11.339/mkl/lib/intel64 CXXOPTFLAGS="-O3" COPTFLAGS="-O3" FOPTFLAGS="-03" --with-shared-libraries=1 --with-debugging=0 --download-fftw=1
Regards Thomas
On Tue, Jul 10, 2012 at 6:44 PM, [email protected] <[email protected]> wrote:
No, try to use petsc-dev with slepc-dev -----Original message----- From: Thomas Hisch Sent: 10/07/2012, 9:07 pm To: PETSc users list Subject: Re: [petsc-users] FFT Matrix Examples/Tests: Compiletime error
Hey,
thx for your quick response! Is petsc-3.3 compatible with the current slepc-3.2 ??
On Tue, Jul 10, 2012 at 5:31 PM, Hong Zhang <[email protected]> wrote:
Thomas: Please update to petsc-3.3, and build it with FFTW. ex148.c was rewritten using FFTW.
Hong
Hello list!
I tried to test one of the FFT examples in src/mat/examples/tests/ by typing "make ex148" in this directory. Unfortunately the compilation failed:
mpicxx -o ex148.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -fPIC -I/home/thomas/local/src/petsc-3.2-p6/include -I/home/thomas/local/src/petsc-3.2-p6/arch-linux2-cxx-release/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -D__INSDIR__=src/mat/examples/tests/ ex148.c ex148.c: In function ‘PetscInt main(PetscInt, char**)’: ex148.c:45:37: error: ‘InputTransformFFT’ was not declared in this scope ex148.c:54:39: error: ‘OutputTransformFFT’ was not declared in this scope make: [ex148.o] Error 1 (ignored)
All the other FFT examples seem to use these two Transformation functions as well. Any ideas where these functions are defined ?
Regards, Thomas
-- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener