We have it working on a solaris [sparc] box - so I'm not sure what the problem here is.. You can run this in a debugger to chek where it crashing.. If you have -lsunperf, configure shoul automatically detect it [so no extra option is necessary] Also - looks like -lsunperf requires -lsunmath -lm - so perhaps these need specifying? [[email protected] is not an appropriate list for such discussions. You can send these issues to [email protected]. If you wish to discuss thse issues in a public list - then you can use [email protected] list] Satish On Wed, 16 May 2007, Yi-Feng Adam Zhang wrote:
Hi all,
Does anyone use the latest Sun Studio Performance Library(libsunperf.a) with PETSc? I just make a compilation but failed in the test stage.
The configure.py is : #!/usr/bin/env python if __name__ == '__main__': import sys sys.path.insert(0, '/work/adam/petsc/perf.mpi.suncc.blas.c/config') import configure configure_options = ['--with-cc-cc', '--with-shared=0', '--download-mpich=1', '-PETSC_ARCH=solaris2.10-c-debug', '--with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so', '--with-fc=0'] configure.petsc_configure(configure_options)
The error message I get after issue "make test": -bash-3.00# make test Running test examples to verify correct installation Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI processSee http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 lid velocity = 0.0016, prandtl # = 1, grashof # = 1 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c [0]PETSC ERROR: [0] SNESSolve line 1811 src/snes/interface/snes.c [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16 14:07:31 2007 [0]PETSC ERROR: Libraries linked from /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug [0]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007 [0]PETSC ERROR: Configure options --with-cc-cc --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1 --with-fc=0 --with-shared=0 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI processes See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [cli_1]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 lid velocity = 0.0016, prandtl # = 1, grashof # = 1 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c [0]PETSC ERR[1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[1]PETSC ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find memory corruption errors [1]PETSC ERROR: likely location of problem given in stack below [1]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [1]PETSC ERROR: INSTEAD the line number of the start of the function [1]PETSC ERROR: is given. [1]PETSC ERROR: [1] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c [1]PETSC ERROR: [1] VecNorm line 148 src/vec/vec/interface/rvector.c [1]PETSC ERROR: [1] SNESSolve line 1811 src/snes/interface/snes.OR: [0] SNESSolve line 1811 src/snes/interface/snes.c [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16 14:07:32 2007 [0]PETSC ERROR: Libraries linked from /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug [0]PETSC ERROR: Configure ruc [1]PETSC ERROR: [1] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c [1]PETSC ERROR: [1] DMMGSolve line 250 src/snes/utils/damg.c [1]PETSC ERROR: --------------------- Error Message ------------------------------------ [1]PETSC ERROR: Signal received! [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428 [1]PETSC ERROR: See docs/changes/index.html for recent updates. [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1]PETSC ERROR: See docs/index.html for manual pages. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16 14:07:32 2007 [1]PETSC ERROR: Libraries linked from /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug [1]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007 [1]PETSC ERROR: Confign at Tue May 15 11:05:42 2007 [0]PETSC ERROR: Configure options --with-cc-cc --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1 --with-fc=0 --with-shared=0 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file ure options --with-cc-cc --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1 --with-fc=0 --with-shared=0 [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file Possible error running Graphics examples src/snes/examples/tutorials/ex19 1 MPI process See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 lid velocity = 0.0016, prandtl # = 1, grashof # = 1 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c [0]PETSC ERROR: [0] SNESSolve line 1811 src/snes/interface/snes.c [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16 14:07:34 2007 [0]PETSC ERROR: Libraries linked from /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug [0]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007 [0]PETSC ERROR: Configure options --with-cc-cc --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1 --with-fc=0 --with-shared=0 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file Completed test examples
It looks like there is a fatal error in memory operations at the PetscFunctionBegin macro.
Regards, Adam