This thread is instructive for people who think Spack is a good system. Matt ---------- Forwarded message --------- From: Balay, Satish via petsc-maint <[email protected]> Date: Thu, Dec 20, 2018 at 3:01 PM Subject: Re: [petsc-maint] Can't install latest version using spack, complains about superludist cxx clash To: Syed, Sajid Ali <[email protected]> Cc: Balay, Satish <[email protected]>, petsc-maint <[email protected]> Can you send the relavent config files? Try installing with spack install --keep-stage petsc [options] [from the build location] send: spack-build.env spack-build.out configure.log Satish On Thu, 20 Dec 2018, Sajid Ali via petsc-maint wrote:
Looking closely, I don’t understand why petsc was ever linked to libblas and liblapack at lib64.
Does this have anything to do with the F77 warning ?
[sajid@xrm lib]$ ldd libpetsc.so.3.10.3 linux-vdso.so.1 => (0x00007ffc2cdef000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f6385ee8000) libm.so.6 => /lib64/libm.so.6 (0x00007f6385be6000) libdl.so.2 => /lib64/libdl.so.2 (0x00007f63859e2000) libsuperlu_dist.so.6 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/superlu-dist-6.1.0-gi3hicljihkga7x3ew66q5xdyunmmqc3/lib/libsuperlu_dist
.so.6 (0x00007f6385724000) libmkl_intel_lp64.so =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_lib
raries_2019.0.117/linux/mkl/lib/intel64/libmkl_intel_lp64.so (0x00007f6384bf3000) libmkl_sequential.so =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_lib
raries_2019.0.117/linux/mkl/lib/intel64/libmkl_sequential.so (0x00007f638365a000) libmkl_core.so =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_libraries
_2019.0.117/linux/mkl/lib/intel64/libmkl_core.so (0x00007f637f521000) libhdf5hl_fortran.so.100 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib/libhdf5hl_fortran.
so.100 (0x00007f637f304000) libhdf5_fortran.so.100 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib/libhdf5_fortran.so.1
00 (0x00007f637f0bc000) libhdf5_hl.so.100 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib/libhdf5_hl.so.100
(0x0000 7f637ee97000) libhdf5.so.103 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib/libhdf5.so.103
(0x00007f637e 8a4000) libparmetis.so =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/parmetis-4.0.3-hw3j2ss7mjsc5x5f2gaflirnuufzptil/lib/libparmetis.so
(0x00007f6 37e66c000) libmetis.so =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/metis-5.1.0-nhgzn4kjskctzmzv35mstvd34nj2ugek/lib/libmetis.so
(0x00007f637e3fc000 ) libz.so.1 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/zlib-1.2.11-ldu43taplg2nbkxtem346zq4ibhad64i/lib/libz.so.1
(0x00007f637e1e5000) libX11.so.6 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/libx11-1.6.5-fq4iuwdxjyckf5eqsvnistset6p4hrzm/lib/libX11.so.6
(0x00007f637deaa00 0) libstdc++.so.6 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libstdc++.so.6
(0x00007f637d b28000) libmpifort.so.12 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/lib/libmpifort.so.12
(0x00007f63 7d8ef000) libmpi.so.12 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/lib/libmpi.so.12
(0x00007f637d39c000 ) libgfortran.so.4 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libgfortran.so.4
(0x00007f 637cfc9000) libgcc_s.so.1 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libgcc_s.so.1
(0x00007f637cdb 1000) libquadmath.so.0 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libquadmath.so.0
(0x00007f 637cb72000) libc.so.6 => /lib64/libc.so.6 (0x00007f637c7af000) /lib64/ld-linux-x86-64.so.2 (0x0000562660743000) liblapack.so.3 => /lib64/liblapack.so.3 (0x00007f637c051000) libblas.so.3 => /lib64/libblas.so.3 (0x00007f637bdf7000) libmpicxx.so.12 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/lib/libmpicxx.so.12
(0x00007f637b bd6000) libgomp.so.1 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libgomp.so.1
(0x00007f637b9a80 00) libxcb.so.1 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/libxcb-1.13-w3g6d3ulogwz3cxf5brw3ymiw22apkax/lib/libxcb.so.1
(0x00007f637b780000 ) libXau.so.6 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/libxau-1.0.8-kv6fes6sr7z5mu6gkmpanmzx2tmbaroc/lib/libXau.so.6
(0x00007f637b57c00 0) libXdmcp.so.6 =>
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/libxdmcp-1.1.2-pogqqdhqufmv567ch6n4eipdw7wgpdui/lib/libXdmcp.so.6
(0x00007f637 b375000) libudev.so.1 => /lib64/libudev.so.1 (0x00007f637b360000) libxml2.so.2 => /lib64/libxml2.so.2 (0x00007f637aff6000) librt.so.1 => /lib64/librt.so.1 (0x00007f637aded000) libgfortran.so.3 => /lib64/libgfortran.so.3 (0x00007f637aacb000) libcap.so.2 => /lib64/libcap.so.2 (0x00007f637a8c5000) libdw.so.1 => /lib64/libdw.so.1 (0x00007f637a67e000) liblzma.so.5 => /lib64/liblzma.so.5 (0x00007f637a458000) libattr.so.1 => /lib64/libattr.so.1 (0x00007f637a252000) libelf.so.1 => /lib64/libelf.so.1 (0x00007f637a03a000) libbz2.so.1 => /lib64/libbz2.so.1 (0x00007f6379e2a000) [sajid@xrm lib]$ pwd
/raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/petsc-3.10.3-7fyzhapqnl6qkcuidwugoizr6yt4ujil/lib
-- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>