I will try again. But I just pulled before the test. Will see. Barry On Mar 30, 2012, at 9:21 PM, Dmitry Karpeev wrote:
Barry, This looks like petsc-dev from about a week ago -- I fixed this bug today. It runs on my laptop right now.
Dmitry.
On Fri, Mar 30, 2012 at 9:00 PM, Barry Smith <[email protected]> wrote:
[0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] DMCreateDecomposition line 854 /Users/barrysmith/Src/petsc-dev/src/dm/interface/dm.c [0]PETSC ERROR: [0] PCSetUp_ASM line 161 /Users/barrysmith/Src/petsc-dev/src/ksp/pc/impls/asm/asm.c [0]PETSC ERROR: [0] PCSetUp line 810 /Users/barrysmith/Src/petsc-dev/src/ksp/pc/interface/precon.c [0]PETSC ERROR: [0] KSPSetUp line 182 /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: [0] KSPSolve line 339 /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: [0] SNES_KSPSolve line 4169 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c [0]PETSC ERROR: [0] SNESSolve_LS line 143 /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c [0]PETSC ERROR: [0] SNESSolve line 3345 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Development HG revision: ebfd90d136e614e3f7e877dc536ab77f25382894 HG Date: Fri Mar 23 21:43:17 2012 -0500 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./ex50 on a arch-gnu named barry-smiths-macbook-pro.local by barrysmith Fri Mar 30 20:27:34 2012 [0]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib [0]PETSC ERROR: Configure run at Fri Mar 23 22:22:13 2012 [0]PETSC ERROR: Configure options --download-blacs --download-fftw --download-hypre --download-metis --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-yaml --with-shared-libraries PETSC_ARCH=arch-gnu [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [cli_0]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: likely location of problem given in stack below [1]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [1]PETSC ERROR: INSTEAD the line number of the start of the function [1]PETSC ERROR: is given. [1]PETSC ERROR: [1] DMCreateDecomposition line 854 /Users/barrysmith/Src/petsc-dev/src/dm/interface/dm.c [1]PETSC ERROR: [1] PCSetUp_ASM line 161 /Users/barrysmith/Src/petsc-dev/src/ksp/pc/impls/asm/asm.c [1]PETSC ERROR: [1] PCSetUp line 810 /Users/barrysmith/Src/petsc-dev/src/ksp/pc/interface/precon.c [1]PETSC ERROR: [1] KSPSetUp line 182 /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c [1]PETSC ERROR: [1] KSPSolve line 339 /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c [1]PETSC ERROR: [1] SNES_KSPSolve line 4169 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c [1]PETSC ERROR: [1] SNESSolve_LS line 143 /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c [1]PETSC ERROR: [1] SNESSolve line 3345 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c [1]PETSC ERROR: --------------------- Error Message ------------------------------------ [1]PETSC ERROR: Signal received! [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Petsc Development HG revision: ebfd90d136e614e3f7e877dc536ab77f25382894 HG Date: Fri Mar 23 21:43:17 2012 -0500 [1]PETSC ERROR: See docs/changes/index.html for recent updates. [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [1]PETSC ERROR: See docs/index.html for manual pages. [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: ./ex50 on a arch-gnu named barry-smiths-macbook-pro.local by barrysmith Fri Mar 30 20:27:34 2012 [1]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib [1]PETSC ERROR: Configure run at Fri Mar 23 22:22:13 2012 [1]PETSC ERROR: Configure options --download-blacs --download-fftw --download-hypre --download-metis --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-yaml --with-shared-libraries PETSC_ARCH=arch-gnu [1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 [cli_1]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1 [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [2]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [2]PETSC ERROR: likely location of problem given in stack below [2]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [2]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [2]PETSC ERROR: INSTEAD the line number of the start of the function [2]PETSC ERROR: is given. [2]PETSC ERROR: [2] DMCreateDecomposition line 854 /Users/barrysmith/Src/petsc-dev/src/dm/interface/dm.c [2]PETSC ERROR: [2] PCSetUp_ASM line 161 /Users/barrysmith/Src/petsc-dev/src/ksp/pc/impls/asm/asm.c [2]PETSC ERROR: [2] PCSetUp line 810 /Users/barrysmith/Src/petsc-dev/src/ksp/pc/interface/precon.c [2]PETSC ERROR: [2] KSPSetUp line 182 /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c [2]PETSC ERROR: [2] KSPSolve line 339 /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c [2]PETSC ERROR: [2] SNES_KSPSolve line 4169 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c [2]PETSC ERROR: [2] SNESSolve_LS line 143 /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c [2]PETSC ERROR: [2] SNESSolve line 3345 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c [2]PETSC ERROR: --------------------- Error Message ------------------------------------ [2]PETSC ERROR: Signal received! [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Petsc Development HG revision: ebfd90d136e614e3f7e877dc536ab77f25382894 HG Date: Fri Mar 23 21:43:17 2012 -0500 [2]PETSC ERROR: See docs/changes/index.html for recent updates. [2]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [2]PETSC ERROR: See docs/index.html for manual pages. [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: ./ex50 on a arch-gnu named barry-smiths-macbook-pro.local by barrysmith Fri Mar 30 20:27:34 2012 [2]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib [2]PETSC ERROR: Configure run at Fri Mar 23 22:22:13 2012 [2]PETSC ERROR: Configure options --download-blacs --download-fftw --download-hypre --download-metis --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-yaml --with-shared-libraries PETSC_ARCH=arch-gnu [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: User provided function() line 0 in unknown directory unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2 [cli_2]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 2 [3]PETSC ERROR: ------------------------------------------------------------------------ [3]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [3]PETSC ERROR: likely location of problem given in stack below [3]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [3]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [3]PETSC ERROR: INSTEAD the line number of the start of the function [3]PETSC ERROR: is given. [3]PETSC ERROR: [3] DMCreateDecomposition line 854 /Users/barrysmith/Src/petsc-dev/src/dm/interface/dm.c [3]PETSC ERROR: [3] PCSetUp_ASM line 161 /Users/barrysmith/Src/petsc-dev/src/ksp/pc/impls/asm/asm.c [3]PETSC ERROR: [3] PCSetUp line 810 /Users/barrysmith/Src/petsc-dev/src/ksp/pc/interface/precon.c [3]PETSC ERROR: [3] KSPSetUp line 182 /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c [3]PETSC ERROR: [3] KSPSolve line 339 /Users/barrysmith/Src/petsc-dev/src/ksp/ksp/interface/itfunc.c [3]PETSC ERROR: [3] SNES_KSPSolve line 4169 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c [3]PETSC ERROR: [3] SNESSolve_LS line 143 /Users/barrysmith/Src/petsc-dev/src/snes/impls/ls/ls.c [3]PETSC ERROR: [3] SNESSolve line 3345 /Users/barrysmith/Src/petsc-dev/src/snes/interface/snes.c [3]PETSC ERROR: --------------------- Error Message ------------------------------------ [3]PETSC ERROR: Signal received! [3]PETSC ERROR: ------------------------------------------------------------------------ [3]PETSC ERROR: Petsc Development HG revision: ebfd90d136e614e3f7e877dc536ab77f25382894 HG Date: Fri Mar 23 21:43:17 2012 -0500 [3]PETSC ERROR: See docs/changes/index.html for recent updates. [3]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [3]PETSC ERROR: See docs/index.html for manual pages. [3]PETSC ERROR: ------------------------------------------------------------------------ [3]PETSC ERROR: ./ex50 on a arch-gnu named barry-smiths-macbook-pro.local by barrysmith Fri Mar 30 20:27:34 2012 [3]PETSC ERROR: Libraries linked from /Users/barrysmith/Src/petsc-dev/arch-gnu/lib [3]PETSC ERROR: Configure run at Fri Mar 23 22:22:13 2012 [3]PETSC ERROR: Configure options --download-blacs --download-fftw --download-hypre --download-metis --download-mpich --download-mumps --download-parmetis --download-ptscotch --download-scalapack --download-superlu --download-superlu_dist --download-yaml --with-shared-libraries PETSC_ARCH=arch-gnu [3]PETSC ERROR: ------------------------------------------------------------------------ [3]PETSC ERROR: User provided function() line 0 in unknown directory unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3 [cli_3]: aborting job: application called MPI_Abort(MPI_COMM_WORLD, 59) - process 3 /Users/barrysmith/Src/petsc-dev/src/snes/examples/tutorials Possible problem with ex50_6, diffs above