On Mon, Mar 29, 2021 at 11:05 PM Junchao Zhang <[email protected]> wrote:
Matt, I can reproduce the error. Let me see what is wrong.
Thanks! It might be a bug in Plex or Forest as well, but it is hard for me to tell. Matt
Thanks. --Junchao Zhang
On Mon, Mar 29, 2021 at 2:16 PM Matthew Knepley <[email protected]> wrote:
Junchao,
I have an SF problem, which I think is a caching bug, but it is hard to see what is happening in the internals. I have made a small example which should help you see what is wrong. It is attached.
If you run without arguments, you get
master *:~/Downloads/tmp/Salac$ ./forestHDF [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Null argument, when expecting valid pointer [0]PETSC ERROR: Trying to copy to a null pointer [0]PETSC ERROR: See https://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.14.5-879-g03cacdc99d GIT Date: 2021-03-22 01:02:08 +0000 [0]PETSC ERROR: ./forestHDF on a arch-master-debug named MacBook-Pro.fios-router.home by knepley Mon Mar 29 15:14:16 2021 [0]PETSC ERROR: Configure options --PETSC_ARCH=arch-master-debug --download-bamg --download-chaco --download-ctetgen --download-egads --download-eigen --download-exodusii --download-fftw --download-hpddm --download-libpng --download-metis --download-ml --download-mumps --download-netcdf --download-opencascade --download-p4est --download-parmetis --download-pnetcdf --download-scalapack --download-slepc --download-suitesparse --download-superlu_dist --download-triangle --with-cmake-exec=/PETSc3/petsc/apple/bin/cmake --with-ctest-exec=/PETSc3/petsc/apple/bin/ctest --with-hdf5-dir=/PETSc3/petsc/apple --with-mpi-dir=/PETSc3/petsc/apple --with-shared-libraries --with-slepc --with-zlib --download-tetgen [0]PETSC ERROR: #1 PetscMemcpy() at /PETSc3/petsc/petsc-dev/include/petscsys.h:1798 [0]PETSC ERROR: #2 UnpackAndInsert_PetscReal_1_1() at /PETSc3/petsc/petsc-dev/src/vec/is/sf/impls/basic/sfpack.c:426 [0]PETSC ERROR: #3 ScatterAndInsert_PetscReal_1_1() at /PETSc3/petsc/petsc-dev/src/vec/is/sf/impls/basic/sfpack.c:426 [0]PETSC ERROR: #4 PetscSFLinkScatterLocal() at /PETSc3/petsc/petsc-dev/src/vec/is/sf/impls/basic/sfpack.c:1248 [0]PETSC ERROR: #5 PetscSFBcastBegin_Basic() at /PETSc3/petsc/petsc-dev/src/vec/is/sf/impls/basic/sfbasic.c:193 [0]PETSC ERROR: #6 PetscSFBcastWithMemTypeBegin() at /PETSc3/petsc/petsc-dev/src/vec/is/sf/interface/sf.c:1493 [0]PETSC ERROR: #7 DMGlobalToLocalBegin() at /PETSc3/petsc/petsc-dev/src/dm/interface/dm.c:2565 [0]PETSC ERROR: #8 VecView_Plex_HDF5_Internal() at /PETSc3/petsc/petsc-dev/src/dm/impls/plex/plexhdf5.c:251 [0]PETSC ERROR: #9 VecView_Plex() at /PETSc3/petsc/petsc-dev/src/dm/impls/plex/plex.c:385 [0]PETSC ERROR: #10 VecView_p4est() at /PETSc3/petsc/petsc-dev/src/dm/impls/forest/p4est/pforest.c:4922 [0]PETSC ERROR: #11 VecView() at /PETSc3/petsc/petsc-dev/src/vec/vec/interface/vector.c:613 [0]PETSC ERROR: #12 main() at /Users/knepley/Downloads/tmp/Salac/forestHDF.c:53 [0]PETSC ERROR: PETSc Option Table entries: [0]PETSC ERROR: -malloc_debug [0]PETSC ERROR: ----------------End of Error Message -------send entire error message to [email protected] application called MPI_Abort(MPI_COMM_SELF, 53001) - process 0 [unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=53001
If you run with
./forestHDF -write_early
or
./forestHDF -no_g2l
Then it is fine. Thus it appears to me that if you run a G2L at the wrong time, something is incorrectly cached.
Thanks,
Matt
-- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener
https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
-- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>