Can you try running with valgrind? https://petsc.org/release/faq/?highlight=valgrind#what-does-corrupt-argument... <https://petsc.org/release/faq/?highlight=valgrind#what-does-corrupt-argument-or-caught-signal-or-segv-or-segmentation-violation-or-bus-error-mean-can-i-use-valgrind-or-cuda-memcheck-to-debug-memory-corruption-issues> Barry
On Oct 5, 2022, at 7:39 AM, ashish bhole <[email protected]> wrote:
Hi All,
I am writing a code in Fortran to solve a linear advection equation using PETSc 3.18.0 (Vec and TS). It seems to work fine on my HP elitebook laptop with Fedora 30 OS and GCC 9.3.1. It gives acceptable numerical solutions, but throws the following error at the end, with as well as without parallel computing. The same error also appears with the slightly older version I tried: PETSc 3.14.0.
The error message gives a hint for error locations, but I am unable to figure out what is wrong. I have attached a snippet for my TS usage lines. I spent some time searching for similar error reports but it was not so fruitful. So I am approaching the PETSc community for help understanding this error. Thank you.
------------------------------------ [0]PETSC ERROR: PetscTrFreeDefault() called from VecDestroy_Seq() at /home/abhole/lib/petsc-3.18.0/src/vec/vec/impls/seq/bvec2.c:753 [0]PETSC ERROR: Block [id=2154(800)] at address 0x2309ac0 is corrupted (probably write past end of array) [0]PETSC ERROR: Block allocated in VecCreate_Seq() at /home/abhole/lib/petsc-3.18.0/src/vec/vec/impls/seq/bvec3.c:34 [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Memory corruption: https://petsc.org/release/faq/#valgrind <https://petsc.org/release/faq/#valgrind> [0]PETSC ERROR: Corrupted memory [0]PETSC ERROR: See https://petsc.org/release/faq/ <https://petsc.org/release/faq/> for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.18.0, Sep 30, 2022 [0]PETSC ERROR: ./exe on a arch-linux-c-debug named ischia by abhole Wed Oct 5 13:06:27 2022 [0]PETSC ERROR: Configure options --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --download-fblaslapack --download-scalapack --download-mumps --download-superlu --download-ptscotch --with-metis-include=/user/abhole/home/lib/metis-5.1.0/include --with-metis-lib=/user/abhole/home/lib/metis-5.1.0/lib/libmetis.a -lmetis --with-parmetis-include=/user/abhole/home/lib/parmetis-4.0.3/include --with-parmetis-lib=/user/abhole/home/lib/parmetis-4.0.3/lib/libparmetis.a -lparmetis -lmetis --with-hdf5-include=/user/abhole/home/lib/hdf5-1.8.18/include --with-hdf5-lib=/user/abhole/home/lib/hdf5-1.8.18/lib64/libhdf5.a --with-valgrind=1 --with-scalar-type=real --with-precision=double [0]PETSC ERROR: #1 PetscTrFreeDefault() at /home/abhole/lib/petsc-3.18.0/src/sys/memory/mtr.c:305 [0]PETSC ERROR: #2 VecDestroy_Seq() at /home/abhole/lib/petsc-3.18.0/src/vec/vec/impls/seq/bvec2.c:753 [0]PETSC ERROR: #3 VecDestroy() at /home/abhole/lib/petsc-3.18.0/src/vec/vec/interface/vector.c:521 [0]PETSC ERROR: #4 VecDestroyVecs_Default() at /home/abhole/lib/petsc-3.18.0/src/vec/vec/interface/vector.c:977 [0]PETSC ERROR: #5 VecDestroyVecs() at /home/abhole/lib/petsc-3.18.0/src/vec/vec/interface/vector.c:606 [0]PETSC ERROR: #6 TSRKTableauReset() at /home/abhole/lib/petsc-3.18.0/src/ts/impls/explicit/rk/rk.c:1102 [0]PETSC ERROR: #7 TSReset_RK() at /home/abhole/lib/petsc-3.18.0/src/ts/impls/explicit/rk/rk.c:1109 [0]PETSC ERROR: #8 TSReset() at /home/abhole/lib/petsc-3.18.0/src/ts/interface/ts.c:2644 [0]PETSC ERROR: #9 TSDestroy() at /home/abhole/lib/petsc-3.18.0/src/ts/interface/ts.c:2706 [0]PETSC ERROR: #10 main.F90:159 ------------------------------------------
-- With Regards Ashish Bhole <petsc_ts.png>