Hi Barry, I run a small test case like you suggested: this results in no error, but the problem with log_summary still persists. Please find attached the output of log_summary. Thanks, Michele On Fri, 2015-06-05 at 21:34 -0500, Barry Smith wrote:
[NID 04001] 2015-06-04 19:07:24 Apid 25022256: initiated application termination Application 25022256 exit signals: Killed Application 25022256 resources: utime ~271s, stime ~15107s, Rss ~188536, inblocks ~5078831, outblocks ~12517984
Usually this kind of message indicates that either the OS or the batch system killed the process for some reason: often because it ran out of time or maybe memory.
Can you run in batch with a request for more time? Do smaller jobs run through ok?
If utime means user time and stime means system time then this is very bad, the system time is HUGE relative to the user time.
Barry
On Jun 5, 2015, at 9:22 PM, Michele Rosso <[email protected]> wrote:
Hi,
I am checking the performances of my code via -log_summary, but the output is incomplete (please see attached) file. I configured petsc with the following options:
if __name__ == '__main__': import sys import os sys.path.insert(0, os.path.abspath('config')) import configure configure_options = [ '--with-batch=1 ', '--known-mpi-shared=0 ', '--known-mpi-shared-libraries=0', '--known-memcmp-ok ', '--with-blas-lapack-lib=-L/opt/acml/5.3.1/gfortran64/lib -lacml', '--COPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ', '--FOPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ', '--CXXOPTFLAGS=-march=bdver1 -fopenmp -O3 -ffast-math -fPIC ', '--with-x=0 ', '--with-debugging=0', '--with-clib-autodetect=0 ', '--with-cxxlib-autodetect=0 ', '--with-fortranlib-autodetect=0 ', '--with-shared-libraries=0 ', '--with-mpi-compilers=1 ', '--with-cc=cc ', '--with-cxx=CC ', '--with-fc=ftn ', # '--with-64-bit-indices', '--download-hypre=1', '--download-blacs=1 ', '--download-scalapack=1 ', '--download-superlu_dist=1 ', '--download-metis=1 ', '--download-parmetis=1 ', ] configure.petsc_configure(configure_options)
Any idea about this issue? Thanks,
Michele
<log_summary>