Trouble building shared parallel hdf5 library on BGQ, trying to use w Darshan
I am trying to apply Darshan to a dynamically linked executable on a BGQ system with shared parallel hdf5 library. I have tried several Darshan versions, several hdf5 versions, and am using the gcc C and fortran compilers (with mlicc and mpif90 wrappers) Without Darshan, the code will execute, but when set LD_PRELOAD, the code aborts. My suspicion is that there is a problem with my hdf5 library build. Has anyone encountered this? Does anyone have a good (and current)recipe for building parallel hdf5 on BGQ? Thanks, - Richard ==================================================== Richard Hedges Customer Support and Test - File Systems Project Development Environment Group - Livermore Computing Lawrence Livermore National Laboratory 7000 East Avenue, MS L-557 Livermore, CA 94551 v: (925) 423-2699 f: (925) 423-6961 E: [email protected]
I haven't tried HDF5 with dynamic linking. We build HDF5 like this: $ ./configure --without-pthread --disable-shared --enable-fortran --disable-cxx --enable-parallel --with-zlib=/soft/libraries/alcf/current/xl/ZLIB --prefix=/soft/libraries/hdf5/1.8.14/cnk-xl/V1R2M2-20150213 using XL compiler. Do you get a core file from the abort? If you take a look at the call stack maybe that will give a hint where we should look. kevin
I am trying to apply Darshan to a dynamically linked executable on a BGQ system with shared parallel hdf5 library. I have tried several Darshan versions, several hdf5 versions, and am using the gcc C and fortran compilers (with mlicc and mpif90 wrappers)
Without Darshan, the code will execute, but when set LD_PRELOAD, the code aborts. My suspicion is that there is a problem with my hdf5 library build.
Has anyone encountered this?
Does anyone have a good (and current)recipe for building parallel hdf5 on BGQ?
Thanks, - Richard
====================================================
Richard Hedges Customer Support and Test - File Systems Project Development Environment Group - Livermore Computing Lawrence Livermore National Laboratory 7000 East Avenue, MS L-557 Livermore, CA 94551
v: (925) 423-2699 f: (925) 423-6961 E: [email protected]
On 01/12/2016 11:25 AM, Hedges, Richard M. wrote:
I am trying to apply Darshan to a dynamically linked executable on a BGQ system with shared parallel hdf5 library. I have tried several Darshan versions, several hdf5 versions, and am using the gcc C and fortran compilers (with mlicc and mpif90 wrappers)
Without Darshan, the code will execute, but when set LD_PRELOAD, the code aborts. My suspicion is that there is a problem with my hdf5 library build.
Has anyone encountered this?
Does anyone have a good (and current)recipe for building parallel hdf5 on BGQ?
My BGQ recipe (attached) is not so different from the one you shared with me all those years ago. I merely updated it for 1.8 ==rob
Thanks, - Richard
====================================================
Richard Hedges Customer Support and Test - File Systems Project Development Environment Group - Livermore Computing Lawrence Livermore National Laboratory 7000 East Avenue, MS L-557 Livermore, CA 94551
v: (925) 423-2699 f: (925) 423-6961 E: [email protected]
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participants (3)
-
Harms, Kevin -
Hedges, Richard M. -
Rob Latham