November 2009 - Nek5000-users - mailman3.cels.anl.gov

makenek for systemX
by nek5000-users＠lists.mcs.anl.gov 09 Dec '09

09 Dec '09

Dear developers, I started using the latest version of nek5000 yesterday, shifting from one that I got from Paul about 2 years ago (I have been running nek5000 since 2002 or so). Paul compiled it on my 8-processor workstation using PG. After a short warm up, I want to run on systemX which is based on IBM compilers. Attached is the makefile that I have been using on systemX for the older nek5000 version. Can you suggest changes in the makefile that came with the svn version to compile on sysX? Thanks!! ps: the new nek5000 is looking very good! Tamay Ozgokmen Associate Professor Division of Meteorology and Physical Oceanography Rosenstiel School of Marine and Atmospheric Science 4600 Rickenbacker Causeway Miami, FL 33149-1098, USA Phone : 305 421 4053 Fax : 305 421 4696 Email : tozgokmen(a)rsmas.miami.edu Web : http://www.rsmas.miami.edu/personal/tamay

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Tecplot-Format
by nek5000-users＠lists.mcs.anl.gov 27 Nov '09

27 Nov '09

Hello Stefan, only a short question: Does there exist a converter for the output files of NEK5000 to Tecplot format? Or do I have to generate with POSTNEK a vtk file and then convert it with Paraview or something similar?? Thanks a lot. Greets, Fred

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Re: [Nek5000-users] nek5000 compilation - success!!
by stefanke 26 Nov '09

26 Nov '09

Yes you PBS job file looks ok. I will submit the fix to the repo. Stefan On Nov 26, 2009, at 6:16 PM, Tamay Ozgokmen wrote: > > It worked!!! It is always a great feeling when that happens :) > Thanks Stefan!! Really appreciate this! > > So I need to run it now - I have a simple script (see below) that I > submit with qsub, it should work, right? > > sysx1:~/nek_examples/mli ozgokmen$ cat neks > #!/bin/bash > #PBS -lnodes=48:ppn=2 > #PBS -lwalltime=00:95:00 > #PBS -W group_list=tcf_user > #PBS -q production_q > #PBS -A vpit1010 > NUM_NODES=`/bin/cat $PBS_NODEFILE | /usr/bin/wc -l | /usr/bin/sed "s/ //g"` > cd $PBS_O_WORKDIR > export PATH=/nfs/software/bin:$PATH > echo mli65-sgsd-p > SESSION.NAME > echo `pwd`'/' >> SESSION.NAME > rm -f logfile > rm -f ioinfo > > /bin/echo starting > /bin/date > /bin/echo > > jmdrun -np $NUM_NODES \ > -hostfile $PBS_NODEFILE \ > ./nek5000 &> mli65-sgsd-p.log > > /bin/echo > /bin/date > /bin/echo ending > > exit; > > > > > > > On Nov 26, 2009, at 12:10 PM, stefanke wrote: > >> #include <stdio.h> >> #include <stdlib.h> >> #include "jl/fname.h" >> >> #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK) >> >> #if defined __GLIBC__ >> >> #include <execinfo.h> >> /* Obtain a backtrace and print it to stdout. */ >> void print_stack(void) >> { >> void *bt[50]; >> int i; >> int bt_size = backtrace(bt, 50); >> char **symbols = backtrace_symbols(bt, bt_size); >> >> printf ("backtrace(): obtained %d stack frames.\n", bt_size); >> for (i=0; i<bt_size; i++) printf("%s\n", symbols[i]); >> free (symbols); >> } >> #else >> void print_stack(){}; >> #endif > > >

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Re: [Nek5000-users] nek5000 compilation
by stefanke 26 Nov '09

26 Nov '09

Sorry my mistake. try again wit:h #include <stdio.h> #include <stdlib.h> #include "jl/fname.h" #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK) #if defined __GLIBC__ #include <execinfo.h> /* Obtain a backtrace and print it to stdout. */ void print_stack(void) { void *bt[50]; int i; int bt_size = backtrace(bt, 50); char **symbols = backtrace_symbols(bt, bt_size); printf ("backtrace(): obtained %d stack frames.\n", bt_size); for (i=0; i<bt_size; i++) printf("%s\n", symbols[i]); free (symbols); } #else void print_stack(){}; #endif Stefan On Nov 26, 2009, at 6:01 PM, Tamay Ozgokmen wrote: > It seems to get stuck again (compiler.out attached) > > I replaced nek5_svn/trunk/nek/chelpers.c by what you sent, > did make clean and ./makenek userfile.... > > <compiler.out> > > > On Nov 26, 2009, at 11:47 AM, stefanke wrote: > >> Ok it's indeed a non-glibc platform. >> >> Please replace your chelpers.c (source file in the trunk) by >> >> #include <execinfo.h> >> #include <stdio.h> >> #include <stdlib.h> >> #include "jl/fname.h" >> >> #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK) >> >> /* Obtain a backtrace and print it to stdout. */ >> void print_stack(void) >> { >> #if defined __GLIBC__ >> void *bt[50]; >> int i; >> int bt_size = backtrace(bt, 50); >> char **symbols = backtrace_symbols(bt, bt_size); >> >> printf ("backtrace(): obtained %d stack frames.\n", bt_size); >> for (i=0; i<bt_size; i++) printf("%s\n", symbols[i]); >> free (symbols); >> #endif >> } >> >> >> and try again. >> >> #Stefan >> >> >> On Nov 26, 2009, at 5:43 PM, Tamay Ozgokmen wrote: >> >>> >>> It is Apple Mac OS X 10.3.9 >>> >>> (sysx is based on a bunch of Macs.. strange but it works OK...) >>> >>> On Nov 26, 2009, at 11:40 AM, stefanke wrote: >>> >>>> What's your OS (operating system)? >>>> >>>> >>>> On Nov 26, 2009, at 5:25 PM, Tamay Ozgokmen wrote: >>>> >>>>> >>>>> Hi Stefan, >>>>> >>>>> I am unable to answer this question since I know nothing about C or glibc :) >>>>> I also tried with mpicc (instead of mpixlc) with similar results. >>>>> It supposed to be a system based on Power G4 (similar to IBM P4 and P5) chips with >>>>> IBM compilers, I am not sure what exactly is installed. The website is (if any use): >>>>> >>>>> http://www.arc.vt.edu/arc/SystemX/ >>>>> >>>>> I have been running various versions of nek5000 on this for several years. >>>>> A makefile that I use to compile an older version of nek500 is attached, >>>>> if it can provide any clues on how to fix this... >>>>> >>>>> Thanks, >>>>> Tamay >>>>> >>>>> >>>>> <makefile.sysx> >>>>> >>>>> >>>>> On Nov 26, 2009, at 11:16 AM, stefanke wrote: >>>>> >>>>>> "/home/ozgokmen/nek5_svn/trunk/nek/chelpers.c", line 1.10: 1506-296 (S) #include file <execinfo.h> not found. >>>>>> >>>>>> It seems like your running on a non-glibc platform. Right? >>>>>> >>>>>> #Stefan >>>>>> >>>>>> On Nov 26, 2009, at 5:05 PM, Tamay Ozgokmen wrote: >>>>>> >>>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through >>>>>>> (compiler.out attached); any suggestions? >>>>>>> >>>>>>> Thanks! >>>>>>> Tamay >>>>>>> >>>>>>> >>>>>>> ********************************************************************************************************** >>>>>>> >>>>>>> #!/bin/bash >>>>>>> # >>>>>>> # nek5000 build script >>>>>>> # (c) 2008,2009 UCHICAGO ARGONNE, LLC >>>>>>> # >>>>>>> >>>>>>> # source path >>>>>>> SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" >>>>>>> >>>>>>> # plug-in list >>>>>>> PLUGIN_LIST="" >>>>>>> >>>>>>> # pre-processor symbol list >>>>>>> PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM >>>>>>> >>>>>>> # Fortran compiler >>>>>>> F77="mpif77" >>>>>>> >>>>>>> # C compiler >>>>>>> CC="mpixlc" >>>>>>> >>>>>>> ****************************************************************************************************************** >>>>>>> <compiler.out> >>>>>>> >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Nek5000-users mailing list >>>>>>> Nek5000-users(a)lists.mcs.anl.gov >>>>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >>>>>> >>>>> >>>>> ******************************************************************************* >>>>> >>>>> Tamay Ozgokmen >>>>> Associate Professor >>>>> Division of Meteorology and Physical Oceanography >>>>> Rosenstiel School of Marine and Atmospheric Science >>>>> 4600 Rickenbacker Causeway >>>>> Miami, FL 33149-1098, USA >>>>> Phone : 305 421 4053 >>>>> Fax : 305 421 4696 >>>>> Email : tozgokmen(a)rsmas.miami.edu >>>>> Web : http://www.rsmas.miami.edu/personal/tamay >>>>> >>>> >>> >>> ******************************************************************************* >>> >>> Tamay Ozgokmen >>> Associate Professor >>> Division of Meteorology and Physical Oceanography >>> Rosenstiel School of Marine and Atmospheric Science >>> 4600 Rickenbacker Causeway >>> Miami, FL 33149-1098, USA >>> Phone : 305 421 4053 >>> Fax : 305 421 4696 >>> Email : tozgokmen(a)rsmas.miami.edu >>> Web : http://www.rsmas.miami.edu/personal/tamay >>> >> > > ******************************************************************************* > > Tamay Ozgokmen > Associate Professor > Division of Meteorology and Physical Oceanography > Rosenstiel School of Marine and Atmospheric Science > 4600 Rickenbacker Causeway > Miami, FL 33149-1098, USA > Phone : 305 421 4053 > Fax : 305 421 4696 > Email : tozgokmen(a)rsmas.miami.edu > Web : http://www.rsmas.miami.edu/personal/tamay >

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Re: [Nek5000-users] nek5000 compilation
by stefanke 26 Nov '09

26 Nov '09

Ok it's indeed a non-glibc platform. Please replace your chelpers.c (source file in the trunk) by #include <execinfo.h> #include <stdio.h> #include <stdlib.h> #include "jl/fname.h" #define print_stack FORTRAN_NAME(print_stack, PRINT_STACK) /* Obtain a backtrace and print it to stdout. */ void print_stack(void) { #if defined __GLIBC__ void *bt[50]; int i; int bt_size = backtrace(bt, 50); char **symbols = backtrace_symbols(bt, bt_size); printf ("backtrace(): obtained %d stack frames.\n", bt_size); for (i=0; i<bt_size; i++) printf("%s\n", symbols[i]); free (symbols); #endif } and try again. #Stefan On Nov 26, 2009, at 5:43 PM, Tamay Ozgokmen wrote: > > It is Apple Mac OS X 10.3.9 > > (sysx is based on a bunch of Macs.. strange but it works OK...) > > On Nov 26, 2009, at 11:40 AM, stefanke wrote: > >> What's your OS (operating system)? >> >> >> On Nov 26, 2009, at 5:25 PM, Tamay Ozgokmen wrote: >> >>> >>> Hi Stefan, >>> >>> I am unable to answer this question since I know nothing about C or glibc :) >>> I also tried with mpicc (instead of mpixlc) with similar results. >>> It supposed to be a system based on Power G4 (similar to IBM P4 and P5) chips with >>> IBM compilers, I am not sure what exactly is installed. The website is (if any use): >>> >>> http://www.arc.vt.edu/arc/SystemX/ >>> >>> I have been running various versions of nek5000 on this for several years. >>> A makefile that I use to compile an older version of nek500 is attached, >>> if it can provide any clues on how to fix this... >>> >>> Thanks, >>> Tamay >>> >>> >>> <makefile.sysx> >>> >>> >>> On Nov 26, 2009, at 11:16 AM, stefanke wrote: >>> >>>> "/home/ozgokmen/nek5_svn/trunk/nek/chelpers.c", line 1.10: 1506-296 (S) #include file <execinfo.h> not found. >>>> >>>> It seems like your running on a non-glibc platform. Right? >>>> >>>> #Stefan >>>> >>>> On Nov 26, 2009, at 5:05 PM, Tamay Ozgokmen wrote: >>>> >>>>> >>>>> Hi, >>>>> >>>>> I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through >>>>> (compiler.out attached); any suggestions? >>>>> >>>>> Thanks! >>>>> Tamay >>>>> >>>>> >>>>> ********************************************************************************************************** >>>>> >>>>> #!/bin/bash >>>>> # >>>>> # nek5000 build script >>>>> # (c) 2008,2009 UCHICAGO ARGONNE, LLC >>>>> # >>>>> >>>>> # source path >>>>> SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" >>>>> >>>>> # plug-in list >>>>> PLUGIN_LIST="" >>>>> >>>>> # pre-processor symbol list >>>>> PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM >>>>> >>>>> # Fortran compiler >>>>> F77="mpif77" >>>>> >>>>> # C compiler >>>>> CC="mpixlc" >>>>> >>>>> ****************************************************************************************************************** >>>>> <compiler.out> >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Nek5000-users mailing list >>>>> Nek5000-users(a)lists.mcs.anl.gov >>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >>>> >>> >>> ******************************************************************************* >>> >>> Tamay Ozgokmen >>> Associate Professor >>> Division of Meteorology and Physical Oceanography >>> Rosenstiel School of Marine and Atmospheric Science >>> 4600 Rickenbacker Causeway >>> Miami, FL 33149-1098, USA >>> Phone : 305 421 4053 >>> Fax : 305 421 4696 >>> Email : tozgokmen(a)rsmas.miami.edu >>> Web : http://www.rsmas.miami.edu/personal/tamay >>> >> > > ******************************************************************************* > > Tamay Ozgokmen > Associate Professor > Division of Meteorology and Physical Oceanography > Rosenstiel School of Marine and Atmospheric Science > 4600 Rickenbacker Causeway > Miami, FL 33149-1098, USA > Phone : 305 421 4053 > Fax : 305 421 4696 > Email : tozgokmen(a)rsmas.miami.edu > Web : http://www.rsmas.miami.edu/personal/tamay >

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Re: [Nek5000-users] nek5000 compilation
by stefanke 26 Nov '09

26 Nov '09

What's your OS (operating system)? On Nov 26, 2009, at 5:25 PM, Tamay Ozgokmen wrote: > > Hi Stefan, > > I am unable to answer this question since I know nothing about C or glibc :) > I also tried with mpicc (instead of mpixlc) with similar results. > It supposed to be a system based on Power G4 (similar to IBM P4 and P5) chips with > IBM compilers, I am not sure what exactly is installed. The website is (if any use): > > http://www.arc.vt.edu/arc/SystemX/ > > I have been running various versions of nek5000 on this for several years. > A makefile that I use to compile an older version of nek500 is attached, > if it can provide any clues on how to fix this... > > Thanks, > Tamay > > > <makefile.sysx> > > > On Nov 26, 2009, at 11:16 AM, stefanke wrote: > >> "/home/ozgokmen/nek5_svn/trunk/nek/chelpers.c", line 1.10: 1506-296 (S) #include file <execinfo.h> not found. >> >> It seems like your running on a non-glibc platform. Right? >> >> #Stefan >> >> On Nov 26, 2009, at 5:05 PM, Tamay Ozgokmen wrote: >> >>> >>> Hi, >>> >>> I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through >>> (compiler.out attached); any suggestions? >>> >>> Thanks! >>> Tamay >>> >>> >>> ********************************************************************************************************** >>> >>> #!/bin/bash >>> # >>> # nek5000 build script >>> # (c) 2008,2009 UCHICAGO ARGONNE, LLC >>> # >>> >>> # source path >>> SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" >>> >>> # plug-in list >>> PLUGIN_LIST="" >>> >>> # pre-processor symbol list >>> PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM >>> >>> # Fortran compiler >>> F77="mpif77" >>> >>> # C compiler >>> CC="mpixlc" >>> >>> ****************************************************************************************************************** >>> <compiler.out> >>> >>> >>> >>> _______________________________________________ >>> Nek5000-users mailing list >>> Nek5000-users(a)lists.mcs.anl.gov >>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >> > > ******************************************************************************* > > Tamay Ozgokmen > Associate Professor > Division of Meteorology and Physical Oceanography > Rosenstiel School of Marine and Atmospheric Science > 4600 Rickenbacker Causeway > Miami, FL 33149-1098, USA > Phone : 305 421 4053 > Fax : 305 421 4696 > Email : tozgokmen(a)rsmas.miami.edu > Web : http://www.rsmas.miami.edu/personal/tamay >

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nek5000 compilation
by Tamay Ozgokmen 26 Nov '09

26 Nov '09

Hi, I put compiler options "mpif77" and "mpixlc" in makenek (below) but it did not go through (compiler.out attached); any suggestions? Thanks! Tamay ********************************************************************************************************** #!/bin/bash # # nek5000 build script # (c) 2008,2009 UCHICAGO ARGONNE, LLC # # source path SOURCE_ROOT="$HOME/nek5_svn/trunk/nek" # plug-in list PLUGIN_LIST="" # pre-processor symbol list PPLIST="" # MPIIO BLAS_MXM BG_MXM K10_MXM # Fortran compiler F77="mpif77" # C compiler CC="mpixlc" ******************************************************************************************************************

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Re: [Nek5000-users] How to make the tools?
by stefanke 25 Nov '09

25 Nov '09

This is your problem: > /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory Check the output of: > echo $HOME Try to hardwire the 'bin_nek_tools' path in makenek e.g. > bin_nek_tools="/home/foor/bin" Stefan It looks like 'bin_nek_tools' path is not correct On Nov 25, 2009, at 10:45 AM, Frederik Folke wrote: > Hallo Stefan, > > first of all thanks a lot for fast answering. I just tested your tip and run: > > ~/nek5_svn/trunk/tools$ ./maketools prenek > > But there was an error message: > > /home/folke/nek5_svn/trunk/tools/ > ---------------------- > Make prenek... > ---------------------- > make[1]: Entering directory `/home/folke/nek5_svn/trunk/tools/prenek' > "gfortran" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm > /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory > collect2: ld returned 1 exit status > make[1]: *** [prex] Error 1 > make[1]: Leaving directory `/home/folke/nek5_svn/trunk/tools/prenek' > make: *** [all] Error 1 > > Here is the maketools script: > > #!/bin/bash > > # binary path > bin_nek_tools="$HOME/nek5_svn/trunk/tools/" > > echo $bin_nek_tools > > # specify your compilers here > F77="gfortran" > CC="gcc" > > > So you have got an idea where I might have done a mistake?? > > > Best regards, > Frederik > > > > Zitat von stefanke <stefanke(a)lav.mavt.ethz.ch>: > >> First of all there is no need to use the MPI-wrappers because all tools are serial programs. >> To compile the tools just run: >> >> ./maketools <toolname> >> >> e.g. >> >> ./maketools genmap >> >> >> hth, >> Stefan >> >> >> On Nov 25, 2009, at 10:02 AM, Frederik Folke wrote: >> >>> Dear Nek developers, >>> >>> I just started to introduce myself to your code. Unfortunately I had some problems to >>> "make" the tools of the program (prenek, postnek...). I used the existing makefile in the >>> nek5_svn/trunk/tools/prenek directory and added the first lines of the maketools script: >>> >>> #!/bin/bash >>> >>> # binary path >>> bin_nek_tools="$HOME/bin" >>> >>> # specify your compilers here >>> F77="mpif77" >>> CC="mpicc" >>> >>> To start the compilation I typed: make -f makefile >>> >>> But I got the following message: >>> >>> "mpif77" -c prenek.f >>> prenek.f:89.3: >>> >>> 300 CALL SETEQT 1 >>> prenek.f:198.72: >>> >>> GO TO 300 2 >>> Warning: Label at (1) is not in the same block as the GOTO statement at (2) >>> "mpif77" -c curve.f >>> "mpif77" -c edit.f >>> "mpif77" -c build.f >>> "mpif77" -c build1.f >>> "mpif77" -c build2.f >>> "mpif77" -c bound.f >>> "mpif77" -c plot.f >>> "mpif77" -c xinterface.f >>> "mpif77" -c glomod.f >>> glomod.f:1534.9: >>> >>> ja(2) = w(2,1) 1 >>> Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1 >>> "mpif77" -c legend.f >>> "mpif77" -c vprops.f >>> "mpif77" -c iolib.f >>> "mpif77" -c subs.f >>> "mpif77" -c zipper2.f >>> zipper2.f:1560.20: >>> >>> COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 >>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>> zipper2.f:2816.20: >>> >>> COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 >>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>> zipper2.f:4640.20: >>> >>> common /ctmp0/ jx(nxm*3),jyt(nym*3),jzt(nzm*3) 1 >>> Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size >>> zipper2.f:4639.20: >>> >>> common /ctmp2/ xp(nxm3),yp(nxm3),zp(nxm3),wk(ldw) 1 >>> Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size >>> zipper2.f:4776.20: >>> >>> common /ctmp0/ xcb(2,2,2),ycb(2,2,2),zcb(2,2,2),w(ldw) 1 >>> Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size >>> "mpif77" -c postnek6.f >>> "mpif77" -c screen.f >>> "mpicc" -c revert.c >>> "mpif77" -c crs.f >>> "mpif77" -c mxm.f >>> "mpicc" -c xdriver.c >>> "mpif77" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o >>> plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o >>> screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm >>> /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory >>> collect2: ld returned 1 exit status >>> make: *** [prex] Error 1 >>> >>> >>> Hope you can help me. >>> >>> Best regards, >>> Frederik >>> >>> >>> p.s.: Is there existing a "Users Guide" for Nek5000 or is at least the "Users Guide" for >>> Nekton v?? helpfull? >>> >>> _______________________________________________ >>> Nek5000-users mailing list >>> Nek5000-users(a)lists.mcs.anl.gov >>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users >> >> > > >

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How to make the tools?
by Frederik Folke 25 Nov '09

25 Nov '09

Dear Nek developers, I just started to introduce myself to your code. Unfortunately I had some problems to "make" the tools of the program (prenek, postnek...). I used the existing makefile in the nek5_svn/trunk/tools/prenek directory and added the first lines of the maketools script: #!/bin/bash # binary path bin_nek_tools="$HOME/bin" # specify your compilers here F77="mpif77" CC="mpicc" To start the compilation I typed: make -f makefile But I got the following message: "mpif77" -c prenek.f prenek.f:89.3: 300 CALL SETEQT 1 prenek.f:198.72: GO TO 300 2 Warning: Label at (1) is not in the same block as the GOTO statement at (2) "mpif77" -c curve.f "mpif77" -c edit.f "mpif77" -c build.f "mpif77" -c build1.f "mpif77" -c build2.f "mpif77" -c bound.f "mpif77" -c plot.f "mpif77" -c xinterface.f "mpif77" -c glomod.f glomod.f:1534.9: ja(2) = w(2,1) 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1 "mpif77" -c legend.f "mpif77" -c vprops.f "mpif77" -c iolib.f "mpif77" -c subs.f "mpif77" -c zipper2.f zipper2.f:1560.20: COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size zipper2.f:2816.20: COMMON /CTMP2/ XP(NXM3),YP(NXM3),ZP(NXM3),RRL(3) 1 Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size zipper2.f:4640.20: common /ctmp0/ jx(nxm*3),jyt(nym*3),jzt(nzm*3) 1 Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size zipper2.f:4639.20: common /ctmp2/ xp(nxm3),yp(nxm3),zp(nxm3),wk(ldw) 1 Warning: Named COMMON block 'ctmp2' at (1) shall be of the same size zipper2.f:4776.20: common /ctmp0/ xcb(2,2,2),ycb(2,2,2),zcb(2,2,2),w(ldw) 1 Warning: Named COMMON block 'ctmp0' at (1) shall be of the same size "mpif77" -c postnek6.f "mpif77" -c screen.f "mpicc" -c revert.c "mpif77" -c crs.f "mpif77" -c mxm.f "mpicc" -c xdriver.c "mpif77" -o "OME/bin"/prex prenek.o curve.o edit.o build.o build1.o build2.o bound.o plot.o xinterface.o glomod.o legend.o vprops.o iolib.o subs.o zipper2.o postnek6.o screen.o revert.o crs.o mxm.o xdriver.o -L/usr/X11R6/lib -lX11 -lm /usr/bin/ld: cannot open output file OME/bin/prex: No such file or directory collect2: ld returned 1 exit status make: *** [prex] Error 1 Hope you can help me. Best regards, Frederik p.s.: Is there existing a "Users Guide" for Nek5000 or is at least the "Users Guide" for Nekton v?? helpfull?

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nek5000 v.1.0 planning
by stefanke 15 Nov '09

15 Nov '09

Dear Nek Users/Developers, I just started to write up the things we have to do before we can release our first stable release (see here: https://nek5000.mcs.anl.gov/index.php/Nek5000_1.0_Planning ). Please help us. Your input (bugs, additional features, improvements) is highly appreciated! Cheers, Stefan

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