September 2017 - Nek5000-users - mailman3.cels.anl.gov

Re: [Nek5000-users] Simulation hanging at 'mapping elements to processors'
by nek5000-users＠lists.mcs.anl.gov 03 Oct '17

03 Oct '17

Can you please re-run your case with your old .map file. I was not able to reproduce your problem and I trying to understand if there a bug in the .map reader. -----Original message----- > From:[email protected] <nek5000-users(a)lists.mcs.anl.gov> > Sent: Monday 25th September 2017 14:25 > To: nek5000-users(a)lists.mcs.anl.gov > Subject: Re: [Nek5000-users] Simulation hanging at 'mapping elements to processors' > > Thanks, it did work. > > Marco > On Sep 23, 2017, at 1:21 AM, > nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> wrote: > > You can use tools/amg_hypre instead of amg_matlab2. > > On 23 Sep 2017, at 02:15, "nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]>" <nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]>> wrote: > > Hi, > > the job run until it threw the following error message: > > EXIT: Problem size requires AMG solver 1 > > I attached the log file. > > My mesh has 478946 elements. Do I have to use the AMG solver, or is there a workaround? If I remember correctly the AMG solver requires Matlab which I do not have access to. > > Thanks, > Marco > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users> > <Actesys.1.000> > On Sep 22, 2017, at 8:26 AM, > nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> wrote: > > I generated the ma2 file and submitted the job. I will let you know how it goes. > > How different is the ma2 file from a map file? > > Thanks, > Marco > > On Sep 22, 2017, at 8:03 AM, > nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> wrote: > > This looks like a bug. > Can you try with the latest version and run genmap again (this will produce a .ma2 file). Make sure you have just a .ma2 and no .map in your case directory. > > If this works I have to check why the old .map doesnâ€™t. > > Stefan > > On 22 Sep 2017, at 13:56, "nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]>" <nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]>> wrote: > > Stefan, > > below is the log file of the run: > > | _ __ ______ __ __ ______ ____ ____ ____ | > | / | / // ____// //_/ / ____/ / __ \\/ <smb:///> __ > \\/ <smb:///> __ \\ | > | / |/ // __/ / ,< /___ \\ / / / // / / // / / / | > | / /| // /___ / /| | ____/ / / /_/ // /_/ // /_/ / | > | /_/ |_//_____//_/ |_|/_____/ \\___/ <smb://___/> > \\___/ <smb://___/> \\___/ <smb://___/> | > | | > |----------------------------------------------------------| > | | > | NEK5000: Open Source Spectral Element Solver | > | COPYRIGHT (c) 2008-2017 UCHICAGO ARGONNE, LLC | > | Version: 17.0.0-dev | > | Web: http://nek5000.mcs.anl.gov <http://nek5000.mcs.anl.gov/> | > | | > \\----------------------------------------------------------/ > > > Number of processors: 1024 > REAL wdsize : 8 > INTEGER wdsize : 4 > Timer accuracy : 9.54E-08 > > Reading /home/mxd/Nek5000/run/actasys/3d-model/actuatorA.rea > Switch on stress formulation to support PN/PN and IFUSERVP=T > Reading /home/mxd/Nek5000/run/actasys/3d-model/actuatorA.re2 > mapping elements to processors > Reading /home/mxd/Nek5000/run/actasys/3d-model/actuatorA.map > > I run my case with 1024 processors as suggested by Paul. The run hung for two hours before reaching the wall time. > > Marco > > On Sep 22, 2017, at 3:09 AM, > nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> wrote: > > > > Marco, > > > > can you please post your logfile. What version of Nek5000 do you use? > > > > Cheers, > > Stefan > > > > -----Original message----- > >> From:[email protected] <mailto:[email protected]> <nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]>> > >> Sent: Friday 22nd September 2017 2:40 > >> To: nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > >> Subject: Re: [Nek5000-users] Simulation hanging at 'mapping elements to processors' > >> > >> Hi Paul, > >> > >> thanks for the help. I will give it a try tomorrow. I am indeed using the XXT coarse grid solver. > >> > >> Marco > >> > >> On Sep 21, 2017, at 6:49 PM, > >> nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>> <Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> wrote: > >> > >> > >> Hi Marco, > >> > >> I'm not 100 % about the hanging point, but I suggest - especially for larger problems like this - running on a power of 2 processors (i.e., 1024 in your case). > >> > >> This is particularly critical for performance when the XXT (default) coarse grid solver is used. Less so, perhaps, for the AMG coarse solver...I'm assuming you're using the XXT one - but not certain. > >> > >> Best, > >> > >> Paul > >> > >> ----------- > >> From: Nek5000-users <nek5000-users-bounces(a)lists.mcs.anl.gov <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>>> > >> on behalf of nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>> <nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > <mailto:[email protected] <mailto:[email protected]>>> > >> Sent: Thursday, September 21, 2017 3:37:55 PM > >> To: Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>> > >> Subject: [Nek5000-users] Simulation hanging at 'mapping elements to processors' > >> Hello, > >> > >> I am trying to run a simulation that has ~500,000 elements on 1280 processors with lx1=4 for debugging purposes. My simulation hangs after outputting 'mapping elements to processorsâ€™. I generated the mesh with Cubit and then used the exo2nek script to > get the > >> re2 file. Genmap runs fine on the re2 file. > >> > >> I was wondering if this problem has been encountered in the past, and what I could do to fix it. > >> > >> Thanks, > >> Marco > >> > >> _______________________________________________ > >> Nek5000-users mailing list > >> Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>> > >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>> class="" /> > >> _______________________________________________<br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: > none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="" /> > >> Nek5000-users > >> mailing list<br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: > auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="" /> > >> Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> <mailto:[email protected] <mailto:[email protected]>> normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="" /> > >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>> class="" /> > >> _______________________________________________ > >> Nek5000-users mailing list > >> Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users> > > _______________________________________________ > > Nek5000-users mailing list > > Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users> > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users> > _______________________________________________ > Nek5000-users mailing list > Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users> > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users> > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users(a)lists.mcs.anl.gov <mailto:[email protected]> > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users > > _______________________________________________ > Nek5000-users mailing list > Nek5000-users(a)lists.mcs.anl.gov > https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users

1 7

Re: [Nek5000-users] intel compilers
by nek5000-users＠lists.mcs.anl.gov 30 Sep '17

30 Sep '17

Thanks a lot, Philipp, for you feedback. I know what you mean: ./makenek clean. Am I right? I use this command. It works with gnu compilers, but when i compile nek with intel ( mpiifort and mpiicc ) it doesn't. During the compilation a get two types of string in my console: this mpiicc -c -O2 -DNEKNEK -DMPI -DUNDERSCORE -DTIMER /home/itp/ryzhenkov/Nek5000/core/3rd_party/finiparser.c -o obj/finiparser.o; and this /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o): In function `cr_exec': gs.c:(.text+0x322): undefined reference to `ompi_mpi_unsigned_char'. It seems like in one part ( Nek5000/core/3rd_party/ ) all options set properly, but in another part ( Nek5000/3rd_party/gslib/src ) links to mpi library are absent. Regards, Vatlav. > you need to clean the object files in gs lib. > makenek realclean I think is the command. > Best regards, > Philipp > > On 2017-09-29 11:56, nek5000-users(a)lists.mcs.anl.gov wrote: >> Hi Neks! >> >> How to compile new version of Nek with mpiifort and mpiicc? >> >> When i try to do that a catch errors like: >> >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o): In >> function `cr_exec': >> gs.c:(.text+0x322): undefined reference to `ompi_mpi_unsigned_char' >> gs.c:(.text+0x388): undefined reference to `ompi_mpi_unsigned_char' >> gs.c:(.text+0x3d5): undefined reference to `ompi_mpi_unsigned_char' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o): In >> function `pw_exec': >> gs.c:(.text+0x56f): undefined reference to `ompi_mpi_unsigned_char' >> gs.c:(.text+0x629): undefined reference to `ompi_mpi_unsigned_char' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o):gs.c:(.text+0x1f8b): >> more undefined references to `ompi_mpi_unsigned_char' follow >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o): In >> function `gs_setup_pick_': >> gs.c:(.text+0x3a1b): undefined reference to `MPI_Comm_f2c' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(crystal.o): In >> function `gslibcrystal_router': >> crystal.c:(.text+0x30e): undefined reference to `ompi_mpi_unsigned_char' >> crystal.c:(.text+0x34a): undefined reference to `ompi_mpi_unsigned_char' >> crystal.c:(.text+0x3e0): undefined reference to `ompi_mpi_unsigned_char' >> crystal.c:(.text+0x4d3): undefined reference to `ompi_mpi_unsigned_char' >> crystal.c:(.text+0x51b): undefined reference to `ompi_mpi_unsigned_char' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(crystal.o):crystal.c:(.text+0x585): >> more undefined references to `ompi_mpi_unsigned_char' follow >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(comm.o): In >> function `gslibcomm_allreduce.part.4': >> comm.c:(.text+0x4b): undefined reference to `ompi_mpi_float' >> comm.c:(.text+0xf1): undefined reference to `ompi_mpi_unsigned_char' >> comm.c:(.text+0x163): undefined reference to `ompi_mpi_unsigned_char' >> comm.c:(.text+0x18c): undefined reference to `ompi_mpi_unsigned_char' >> comm.c:(.text+0x243): undefined reference to `ompi_mpi_op_max' >> comm.c:(.text+0x297): undefined reference to `ompi_mpi_int' >> comm.c:(.text+0x2a7): undefined reference to `ompi_mpi_op_prod' >> comm.c:(.text+0x2b3): undefined reference to `ompi_mpi_long' >> comm.c:(.text+0x2c3): undefined reference to `ompi_mpi_long_long_int' >> comm.c:(.text+0x2d3): undefined reference to `ompi_mpi_double' >> comm.c:(.text+0x2e3): undefined reference to `ompi_mpi_op_min' >> comm.c:(.text+0x2f3): undefined reference to `ompi_mpi_op_sum' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(comm.o): In >> function `gslibcomm_scan': >> comm.c:(.text+0x441): undefined reference to `ompi_mpi_unsigned_char' >> comm.c:(.text+0x468): undefined reference to `ompi_mpi_unsigned_char' >> comm.c:(.text+0x4ed): undefined reference to `ompi_mpi_unsigned_char' >> comm.c:(.text+0x51b): undefined reference to `ompi_mpi_unsigned_char' >> comm.c:(.text+0x56b): undefined reference to `ompi_mpi_unsigned_char' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(comm.o):comm.c:(.text+0x600): >> more undefined references to `ompi_mpi_unsigned_char' follow >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(fcrystal.o): In >> function `crystal_setup_': >> fcrystal.c:(.text+0x59): undefined reference to `MPI_Comm_f2c' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(fcrs.o): In >> function `crs_setup_': >> fcrs.c:(.text+0x3e): undefined reference to `MPI_Comm_f2c' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(findpts.o): In >> function `comm_init_check_.constprop.8': >> findpts.c:(.text+0x186): undefined reference to `MPI_Comm_f2c' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(xxt.o): In >> function `sum': >> xxt.c:(.text+0x154): undefined reference to `ompi_mpi_unsigned_char' >> xxt.c:(.text+0x1c8): undefined reference to `ompi_mpi_unsigned_char' >> xxt.c:(.text+0x21c): undefined reference to `ompi_mpi_unsigned_char' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(xxt.o): In >> function `apply_QQt': >> xxt.c:(.text+0x313): undefined reference to `ompi_mpi_unsigned_char' >> xxt.c:(.text+0x3c8): undefined reference to `ompi_mpi_unsigned_char' >> /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(xxt.o):xxt.c:(.text+0x41b): >> more undefined references to `ompi_mpi_unsigned_char' follow. >> >> It looks like there are no links to mpi library. >> >> With old version compilation successful. >> >> Regards, Vatslav >> >> _______________________________________________ >> Nek5000-users mailing list >> Nek5000-users(a)lists.mcs.anl.gov >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users

1 1

intel compilers
by nek5000-users＠lists.mcs.anl.gov 29 Sep '17

29 Sep '17

Hi Neks! How to compile new version of Nek with mpiifort and mpiicc? When i try to do that a catch errors like: /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o): In function `cr_exec': gs.c:(.text+0x322): undefined reference to `ompi_mpi_unsigned_char' gs.c:(.text+0x388): undefined reference to `ompi_mpi_unsigned_char' gs.c:(.text+0x3d5): undefined reference to `ompi_mpi_unsigned_char' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o): In function `pw_exec': gs.c:(.text+0x56f): undefined reference to `ompi_mpi_unsigned_char' gs.c:(.text+0x629): undefined reference to `ompi_mpi_unsigned_char' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o):gs.c:(.text+0x1f8b): more undefined references to `ompi_mpi_unsigned_char' follow /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(gs.o): In function `gs_setup_pick_': gs.c:(.text+0x3a1b): undefined reference to `MPI_Comm_f2c' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(crystal.o): In function `gslibcrystal_router': crystal.c:(.text+0x30e): undefined reference to `ompi_mpi_unsigned_char' crystal.c:(.text+0x34a): undefined reference to `ompi_mpi_unsigned_char' crystal.c:(.text+0x3e0): undefined reference to `ompi_mpi_unsigned_char' crystal.c:(.text+0x4d3): undefined reference to `ompi_mpi_unsigned_char' crystal.c:(.text+0x51b): undefined reference to `ompi_mpi_unsigned_char' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(crystal.o):crystal.c:(.text+0x585): more undefined references to `ompi_mpi_unsigned_char' follow /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(comm.o): In function `gslibcomm_allreduce.part.4': comm.c:(.text+0x4b): undefined reference to `ompi_mpi_float' comm.c:(.text+0xf1): undefined reference to `ompi_mpi_unsigned_char' comm.c:(.text+0x163): undefined reference to `ompi_mpi_unsigned_char' comm.c:(.text+0x18c): undefined reference to `ompi_mpi_unsigned_char' comm.c:(.text+0x243): undefined reference to `ompi_mpi_op_max' comm.c:(.text+0x297): undefined reference to `ompi_mpi_int' comm.c:(.text+0x2a7): undefined reference to `ompi_mpi_op_prod' comm.c:(.text+0x2b3): undefined reference to `ompi_mpi_long' comm.c:(.text+0x2c3): undefined reference to `ompi_mpi_long_long_int' comm.c:(.text+0x2d3): undefined reference to `ompi_mpi_double' comm.c:(.text+0x2e3): undefined reference to `ompi_mpi_op_min' comm.c:(.text+0x2f3): undefined reference to `ompi_mpi_op_sum' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(comm.o): In function `gslibcomm_scan': comm.c:(.text+0x441): undefined reference to `ompi_mpi_unsigned_char' comm.c:(.text+0x468): undefined reference to `ompi_mpi_unsigned_char' comm.c:(.text+0x4ed): undefined reference to `ompi_mpi_unsigned_char' comm.c:(.text+0x51b): undefined reference to `ompi_mpi_unsigned_char' comm.c:(.text+0x56b): undefined reference to `ompi_mpi_unsigned_char' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(comm.o):comm.c:(.text+0x600): more undefined references to `ompi_mpi_unsigned_char' follow /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(fcrystal.o): In function `crystal_setup_': fcrystal.c:(.text+0x59): undefined reference to `MPI_Comm_f2c' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(fcrs.o): In function `crs_setup_': fcrs.c:(.text+0x3e): undefined reference to `MPI_Comm_f2c' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(findpts.o): In function `comm_init_check_.constprop.8': findpts.c:(.text+0x186): undefined reference to `MPI_Comm_f2c' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(xxt.o): In function `sum': xxt.c:(.text+0x154): undefined reference to `ompi_mpi_unsigned_char' xxt.c:(.text+0x1c8): undefined reference to `ompi_mpi_unsigned_char' xxt.c:(.text+0x21c): undefined reference to `ompi_mpi_unsigned_char' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(xxt.o): In function `apply_QQt': xxt.c:(.text+0x313): undefined reference to `ompi_mpi_unsigned_char' xxt.c:(.text+0x3c8): undefined reference to `ompi_mpi_unsigned_char' /home/itp/ryzhenkov/Nek5000/3rd_party/gslib/src/libgs.a(xxt.o):xxt.c:(.text+0x41b): more undefined references to `ompi_mpi_unsigned_char' follow. It looks like

1 1

intel compilers
by nek5000-users＠lists.mcs.anl.gov 29 Sep '17

29 Sep '17

there are no links to mpi library. With old version compilation successful. Regards, Vatslav

1 0

Re: [Nek5000-users] proj_ortho error in pipe flow
by nek5000-users＠lists.mcs.anl.gov 28 Sep '17

28 Sep '17

Hi Neks, I might have fixed my proj_ortho error issue. At least it is running now without errors on a small test case on my local machine. However, I am very much unsure if what I was changing is correct. Can you please confirm that my adjustments are reasonable? In conduct.f when hsolve is called, I have adjusted the argument list like this: - napproxt(1) = laxtt ! Fix this... pff 10/10/15 + napproxt(1,ifield-1) = laxtt ! Fix this... pff 10/10/15 call hsolve (name4t,TA,TB,H1,H2 $ ,tmask(1,1,1,1,ifield-1) $ ,tmult(1,1,1,1,ifield-1) $ ,imesh,tolht(ifield),nmxh,1 - $ ,approxt,napproxt,bintm1) + $ ,approxt(1,1,ifield-1),napproxt(1,ifield-1) + $ ,bintm1) such that approxt and napproxt refers to each ifield, ie. temperature, passive scalar 1, passive scalar 2, ... similar to velx, vely, velz. Accordingly, I have adjusted ORTHOT: - integer napproxt(2) + +C Add another dimension to (n)approxt for each passive scalar and temp. + integer napproxt(2,ldimt) common /trthoi/ napproxt - real approxt(ktott,0:laxtt) + real approxt(ktott,0:laxtt,ldimt) and induct.f - napproxt(1) = laxtt + napproxt(1,ifield-1) = laxtt On 09/14/2017 06:29 PM, nek5000-users-request(a)lists.mcs.anl.gov wrote: > Date: Thu, 14 Sep 2017 15:34:39 +0000 > From:[email protected] > To:"nek5000-users(a)lists.mcs.anl.gov" > <nek5000-users(a)lists.mcs.anl.gov> > Subject: Re: [Nek5000-users] proj_ortho error in pipe flow > Message-ID: > <mailman.770.1505403282.10190.nek5000-users(a)lists.mcs.anl.gov> > Content-Type: text/plain; charset="windows-1252" > > > Hi Steffen, > > > Thanks for bringing this to our attention. > > > Adam and I have been looking into this... (no doubt, it's something > > stupid done by me awhile back). > > > Hope to have it resolved by next week. > > > Best, > > > Paul > > > ________________________________ > From: Nek5000-users<nek5000-users-bounces(a)lists.mcs.anl.gov> on behalf ofnek5000-users(a)lists.mcs.anl.gov <nek5000-users(a)lists.mcs.anl.gov> > Sent: Thursday, September 14, 2017 8:18:27 AM > To:[email protected] > Subject: Re: [Nek5000-users] proj_ortho error in pipe flow > > Hi, > > I have made some more tests to find the cause of this issue. > Attached is a laminar pipe flow simulation with temperature and one > passive scalar. The original setup is from Paul's "nusselt.tgz", where > he answered another question of mine. > > I found that I can reproduce the same error I see in my turbulent > simulations when there is an additional passive scalar with a different > type of boundary condition, i.e. Neumann boundary condition at the pipe > wall for temperature and Dirichlet boundary condition for the passive > scalar. > > Can someone please check my setup and tell me why this causes the > projection to fail? > > > I hope to save some computational resources by using the projection. > However, if it is not possible, I will keep param(94) = 0. > > Kind Regards, > Steffen Straub

1 1

Compiling Problems in "Running your very first simulation"
by nek5000-users＠lists.mcs.anl.gov 26 Sep '17

26 Sep '17

Hi! Dear friends, I am new in Nek5000 software and there is a big problem troubling me a lot. It is the first time for me to run Nek5000 with the code downloaded on https://nek5000.mcs.anl.gov/getstarted/in the version v17.0.0-beta2. And during the "Running your very first simulation" process given on the website , I have met a lot of warnings" as shown below : after executing command : cd ~/Nek5000/tools; ./maketools genmap , there goes: xthomas@xthomas-VirtualBox:~$ cd ~/Nek5000/tools; ./maketools genmap ---------------------- Make genmap... ---------------------- make[1]: Entering directory '/home/xthomas/Nek5000/tools/genmap' gfortran -mcmodel=medium -c -fdefault-real-8 genmap.f genmap.f:906:18: len = indx1(prompt,'$',1) - 1 1 Warning: Rank mismatch in argument ‘s1’ at (1) (scalar and rank-1) genmap.f:241:24: call linearmsh(cell,nelv,nelt,ndim) 1 Warning: Actual argument contains too few elements for dummy argument ‘cell’ (1/2) at (1) genmap.f:396:27: call cscan(string,'MESH DATA',9) 1 Warning: Character length of actual argument shorter than of dummy argument ‘key’ (9/80) at (1) genmap.f:3415:9: $ ('Error opening file in open_bin_file ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (36/40) at (1) genmap.f:3418:9: $ ('Error reading header in open_bin_file ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (38/40) at (1) genmap.f:3334:10: $ ('Error byte_reverse in buf_to_xy ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (32/40) at (1) genmap.f:3337:21: call copyi4(igroup,buf(0),1) !0-1 1 Warning: Rank mismatch in argument ‘a’ at (1) (rank-1 and scalar) genmap.f:3339:27: call copy (xc,buf( 2),8) !2 --17 1 Warning: Type mismatch in argument ‘y’ at (1); passed INTEGER(4) to REAL(8) genmap.f:3340:27: call copy (yc,buf(18),8) !18--33 1 Warning: Type mismatch in argument ‘y’ at (1); passed INTEGER(4) to REAL(8) genmap.f:3341:27: call copy (zc,buf(34),8) !34--49 1 Warning: Type mismatch in argument ‘y’ at (1); passed INTEGER(4) to REAL(8) genmap.f:3343:27: call copy (xc,buf( 2),4) !2 --9 1 Warning: Type mismatch in argument ‘y’ at (1); passed INTEGER(4) to REAL(8) genmap.f:3344:27: call copy (yc,buf(10),4) !10--17 1 Warning: Type mismatch in argument ‘y’ at (1); passed INTEGER(4) to REAL(8) genmap.f:3349:27: call copy4r(xc,buf( 1),8) 1 Warning: Type mismatch in argument ‘b’ at (1); passed INTEGER(4) to REAL(4) genmap.f:3350:27: call copy4r(yc,buf( 9),8) 1 Warning: Type mismatch in argument ‘b’ at (1); passed INTEGER(4) to REAL(4) genmap.f:3351:27: call copy4r(zc,buf(17),8) 1 Warning: Type mismatch in argument ‘b’ at (1); passed INTEGER(4) to REAL(4) genmap.f:3353:27: call copy4r(xc,buf( 1),4) 1 Warning: Type mismatch in argument ‘b’ at (1); passed INTEGER(4) to REAL(4) genmap.f:3354:27: call copy4r(yc,buf( 5),4) 1 Warning: Type mismatch in argument ‘b’ at (1); passed INTEGER(4) to REAL(4) genmap.f:268:16: $ ('Error reading ncurve in makemesh ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (33/40) at (1) genmap.f:272:16: $ ('Error reading curve data in makemesh ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (37/40) at (1) genmap.f:278:16: $ ('Error reading ncurve in makemesh ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (33/40) at (1) genmap.f:282:16: $ ('Error reading curve data in makemesh ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (37/40) at (1) genmap.f:3256:21: & ('Error reading byte bcs ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (23/40) at (1) genmap.f:3290:21: call copyi4(e,buf(1),1) !1-2 1 Warning: Rank mismatch in argument ‘a’ at (1) (rank-1 and scalar) genmap.f:3291:21: call copyi4(f,buf(3),1) !3-4 1 Warning: Rank mismatch in argument ‘a’ at (1) (rank-1 and scalar) genmap.f:3292:31: call copy (bl(1,f,e),buf(5),5) !5--14 1 Warning: Type mismatch in argument ‘y’ at (1); passed INTEGER(4) to REAL(8) genmap.f:3293:31: call chcopy(cbl( f,e),buf(15),3)!15-16 1 Warning: Type mismatch in argument ‘y’ at (1); passed INTEGER(4) to CHARACTER(1) genmap.f:3300:34: call copy48r ( bl(1,f,e),buf(3),5) 1 Warning: Type mismatch in argument ‘b’ at (1); passed INTEGER(4) to REAL(4) genmap.f:3301:34: call chcopy (cbl( f,e),buf(8),3) 1 Warning: Type mismatch in argument ‘y’ at (1); passed INTEGER(4) to CHARACTER(1) genmap.f:3267:21: & ('Error reading byte bcs ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (23/40) at (1) genmap.f:299:24: call rd_bc_bin(cbc,bc,nelv,nelt,ifbswap) 1 Warning: Actual argument contains too few elements for dummy argument ‘cbc’ (18/9000000) at (1) genmap.f:303:14: $ ('Error closing file in makemesh ',ierr) 1 Warning: Character length of actual argument shorter than of dummy argument ‘name’ (31/40) at (1) genmap.f:529:24: call cscan(string,'BOUNDARY',8) ! for now, fluid only 1 Warning: Character length of actual argument shorter than of dummy argument ‘key’ (8/80) at (1) genmap.f:540:26: if (indx1(string,'NO ',3).ne.0) then 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (3/80) at (1) genmap.f:542:30: call cscan(string,'BOUNDARY',8) ! then, temp only 1 Warning: Character length of actual argument shorter than of dummy argument ‘key’ (8/80) at (1) genmap.f:2953:53: call tuple_sort(dx(0,i),lda,ninseg(iseg),j1,1,ind,dxt) !key=j1 1 Warning: Rank mismatch in argument ‘key’ at (1) (rank-1 and scalar) genmap.f:323:54: call unique_vertex2(cell,dx,ndim,nelt,q,i_n,j_n,j_o,wk) 1 Warning: Type mismatch in argument ‘ifseg’ at (1); passed INTEGER(4) to LOGICAL(4) genmap.f:141:59: $ (cell,nv,nelt,irnk,dx,ndim,cbc,bc,nfc,w14,w5) 1 Warning: Type mismatch in argument ‘iper’ at (1); passed REAL(8) to INTEGER(4) genmap.f:2552:30: call sbisect (pmap,f,p2,w,n) 1 Warning: Type mismatch in argument ‘p’ at (1); passed REAL(8) to INTEGER(4) genmap.f:2646:21: call ax(w,p,ia,ja,va,n) 1 Warning: Actual argument contains too few elements for dummy argument ‘ia’ (1/2) at (1) genmap.f:2571:30: call lanczos2(f,rr,n,ev,d,u,niter) 1 Warning: Rank mismatch in argument ‘ev’ at (1) (rank-2 and scalar) genmap.f:2576:27: call sbisect (pmap,f,p2,w,n) 1 Warning: Type mismatch in argument ‘p’ at (1); passed REAL(8) to INTEGER(4) genmap.f:4079:46: $ ,nel,d,u,r,p2,w,rr,ev,m,ndim) 1 Warning: Rank mismatch in argument ‘ev’ at (1) (scalar and rank-1) genmap.f:1438:22: call icadd(pmap,p,nel) 1 Warning: Type mismatch in argument ‘c’ at (1); passed REAL(8) to INTEGER(4) genmap.f:1222:59: $ (n1,n2,pmap(j0),order,mo,elist(j0),n,cell,nv,p,w1,w2,w3) 1 Warning: Type mismatch in argument ‘p’ at (1); passed INTEGER(4) to REAL(8) genmap.f:146:62: $ ,w1,w2,w3,w4,w5) 1 Warning: Type mismatch in argument ‘w3’ at (1); passed REAL(8) to INTEGER(4) genmap.f:167:62: $ ,w1,w2,w3,w4,w5) 1 Warning: Type mismatch in argument ‘w3’ at (1); passed REAL(8) to INTEGER(4) genmap.f:1122:27: call isort(ja(j0),ind,nj) 1 Warning: Rank mismatch in argument ‘ind’ at (1) (rank-1 and scalar) genmap.f:3659:30: call breadth_first_fill(pb,pmax) 1 Warning: Actual argument contains too few elements for dummy argument ‘p’ (1/2) at (1) genmap.f:4053:22: common /arrayi2/ jdual(32*lelm) , vdual(32*lelm) 1 Warning: Named COMMON block ‘arrayi2’ at (1) shall be of the same size as elsewhere (130000000 vs 18000000 bytes) genmap.f:225:21: common /arrayi/ i_n(lpts) , j_n(4*lpts) 1 Warning: Named COMMON block ‘arrayi’ at (1) shall be of the same size as elsewhere (144000000 vs 48000000 bytes) genmap.f:81:22: common /carrayw/ w1 (lpts) , w2 (lpts) 1 Warning: Named COMMON block ‘carrayw’ at (1) shall be of the same size as elsewhere (128000000 vs 160000000 bytes) genmap.f:1974:22: common /arrayi2/ face (3*lpts) , elist(lelm) , ind (lpts) 1 Warning: Named COMMON block ‘arrayi2’ at (1) shall be of the same size as elsewhere (66000000 vs 130000000 bytes) gcc -mcmodel=medium -c -DUNDERSCORE ../../core/byte.c gfortran -mcmodel=medium -fdefault-real-8 -o /home/xthomas/Nek5000/bin/genmap genmap.o byte.o make[1]: Leaving directory '/home/xthomas/Nek5000/tools/genmap' And with the command : makenek , things get even worse : make: Entering directory '/home/xthomas/Nek5000/3rd_party/gslib/src' mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c gs.c -o gs.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c sort.c -o sort.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c sarray_transfer.c -o sarray_transfer.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c sarray_sort.c -o sarray_sort.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c gs_local.c -o gs_local.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c fail.c -o fail.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c crystal.c -o crystal.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c comm.c -o comm.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c tensor.c -o tensor.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c sparse_cholesky.c -o sparse_cholesky.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c xxt.c -o xxt.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c amg.c -o amg.o amg.c: In function ‘dopen’: amg.c:767:12: warning: passing argument 1 of ‘gslibfail’ makes integer from pointer without a cast [-Wint-conversion] fail("ERROR ",__FILE__,__LINE__, ^ In file included from amg.c:8:0: <command-line>:0:8: note: expected ‘int’ but argument is of type ‘char *’ name.h:17:27: note: in definition of macro ‘TOKEN_PASTE_’ #define TOKEN_PASTE_(a,b) a##b ^ name.h:21:28: note: in expansion of macro ‘TOKEN_PASTE’ # define PREFIXED_NAME(x) TOKEN_PASTE(PREFIX,x) ^ name.h:21:40: note: in expansion of macro ‘PREFIX’ # define PREFIXED_NAME(x) TOKEN_PASTE(PREFIX,x) ^ fail.h:12:21: note: in expansion of macro ‘PREFIXED_NAME’ #define fail PREFIXED_NAME( fail ) ^ fail.h:32:9: note: in expansion of macro ‘fail’ void fail (int status, const char *file, unsigned line, \ ^ fail.h:39:1: note: in expansion of macro ‘DEF_FUNS’ DEF_FUNS() ^ mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c fcrystal.c -o fcrystal.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c fcrs.c -o fcrs.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c findpts.c -o findpts.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c findpts_local.c -o findpts_local.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c obbox.c -o obbox.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c poly.c -o poly.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c lob_bnd.c -o lob_bnd.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c findpts_el_3.c -o findpts_el_3.o mpicc -O2 -DMPI -DUNDERSCORE -DPREFIX=gslib -DGLOBAL_LONG_LONG -DAMG_BLOCK_ROWS=2400 -DNEK_EXITT -c findpts_el_2.c -o findpts_el_2.o ar cr libgs.a gs.o sort.o sarray_transfer.o sarray_sort.o gs_local.o fail.o crystal.o comm.o tensor.o sparse_cholesky.o xxt.o amg.o fcrystal.o fcrs.o findpts.o findpts_local.o obbox.o poly.o lob_bnd.o findpts_el_3.o findpts_el_2.o ranlib libgs.a make: Leaving directory '/home/xthomas/Nek5000/3rd_party/gslib/src' mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/drive.f -o obj/drive.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/drive1.f -o obj/drive1.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/drive2.f -o obj/drive2.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/plan5.f -o obj/plan5.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/plan4.f -o obj/plan4.o /home/xthomas/Nek5000/core/plan5.f:10:20: common /scrns/ resv (lx1*ly1*lz1*lelv,3) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (2370816 vs 4741632 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/bdry.f -o obj/bdry.o /home/xthomas/Nek5000/core/plan4.f:46:20: call sumab(vx_e,vx,vxlag,ntot1,ab,nab) 1 Warning: Rank mismatch in argument ‘v’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/plan4.f:47:20: call sumab(vy_e,vy,vylag,ntot1,ab,nab) 1 Warning: Rank mismatch in argument ‘v’ at (1) (scalar and rank-4) /home/xthomas/Nek5000/core/plan4.f:48:30: if (if3d) call sumab(vz_e,vz,vzlag,ntot1,ab,nab) 1 Warning: Rank mismatch in argument ‘v’ at (1) (scalar and rank-4) /home/xthomas/Nek5000/core/plan4.f:161:20: common /scruz/ sij (lx1*ly1*lz1,6,lelv) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (4741632 vs 3161088 bytes) /home/xthomas/Nek5000/core/plan4.f:21:20: COMMON /SCRNS/ RES1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (5531904 vs 4741632 bytes) /home/xthomas/Nek5000/core/plan4.f:536:20: common /scrns/ w1(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/coef.f -o obj/coef.o /home/xthomas/Nek5000/core/drive2.f:1949:20: common /scrns/ resv1 (lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (3161088 vs 5531904 bytes) /home/xthomas/Nek5000/core/drive2.f:1585:20: COMMON /SCRNS/ WORK(LCTMP1) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (3161088 vs 5531904 bytes) /home/xthomas/Nek5000/core/drive2.f:1809:20: COMMON /SCRNS/ RESV1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (3161088 vs 5531904 bytes) /home/xthomas/Nek5000/core/drive2.f:2000:20: COMMON /SCRNS/ w(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (790272 vs 5531904 bytes) /home/xthomas/Nek5000/core/drive2.f:2047:20: COMMON /SCRUZ/ TA(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (790272 vs 2370816 bytes) /home/xthomas/Nek5000/core/bdry.f:1386:20: COMMON /CTMP1/ A1X(LX1),A1Y(LX1),STX(LX1),STY(LX1) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (448 vs 7840 bytes) /home/xthomas/Nek5000/core/bdry.f:1453:20: COMMON /CTMP0/ XFM1(LX1),YFM1(LX1),T1XF(LX1),T1YF(LX1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (448 vs 4704 bytes) /home/xthomas/Nek5000/core/bdry.f:1451:20: COMMON /CTMP1/ A1X(LX1),A1Y(LX1),A2X(LX1),A2Y(LX1) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (784 vs 7840 bytes) /home/xthomas/Nek5000/core/coef.f:1651:22: call out_fld_el(x,e,'XQ') 1 Warning: Actual argument contains too few elements for dummy argument ‘x’ (1/98784) at (1) /home/xthomas/Nek5000/core/bdry.f:1883:20: COMMON /SCRMG/ V1(LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (3161088 vs 9408 bytes) /home/xthomas/Nek5000/core/coef.f:1652:22: call out_fld_el(y,e,'YQ') 1 Warning: Actual argument contains too few elements for dummy argument ‘x’ (1/98784) at (1) /home/xthomas/Nek5000/core/coef.f:1653:22: call out_fld_el(z,e,'ZQ') 1 Warning: Actual argument contains too few elements for dummy argument ‘x’ (1/98784) at (1) /home/xthomas/Nek5000/core/coef.f:1211:20: COMMON /CTMP0/ C (LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1580544 vs 3136 bytes) /home/xthomas/Nek5000/core/coef.f:1207:20: COMMON /CTMP1/ ZSM1(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (3161088 vs 2370816 bytes) /home/xthomas/Nek5000/core/coef.f:1081:20: COMMON /CTMP0/ WGTR1(LX1,LELT) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (225792 vs 1580544 bytes) /home/xthomas/Nek5000/core/coef.f:1077:20: COMMON /SCRNS/ XRM1(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (3161088 vs 5531904 bytes) /home/xthomas/Nek5000/core/coef.f:1144:20: COMMON /SCRNS/ XRM1(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (3161088 vs 5531904 bytes) /home/xthomas/Nek5000/core/coef.f:604:20: COMMON /CTMP1/ ZSM1(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (1580544 vs 3161088 bytes) /home/xthomas/Nek5000/core/bdry.f:614:20: COMMON /SCRMG/ TMQ1(LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/bdry.f:611:20: COMMON /SCRUZ/ TMP1(LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (2370816 vs 9408 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/conduct.f -o obj/conduct.o /home/xthomas/Nek5000/core/coef.f:1464:20: COMMON /CTMP0/ XA(LX1,LY3,LZ3), XB(LX1,LY1,LZ3) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (3136 vs 1580544 bytes) /home/xthomas/Nek5000/core/bdry.f:1242:20: COMMON /CTMP0/ STC(LX1,LY1,LZ1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1568 vs 4704 bytes) /home/xthomas/Nek5000/core/bdry.f:1239:20: COMMON /SCRSF/ TRX(LX1,LY1,LZ1) 1 Warning: Named COMMON block ‘scrsf’ at (1) shall be of the same size as elsewhere (4704 vs 2370816 bytes) /home/xthomas/Nek5000/core/bdry.f:2025:20: common /scrmg/ v1(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/coef.f:1397:20: COMMON /CTMP0/ XB(LX1,LY1,LZ1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1568 vs 1580544 bytes) /home/xthomas/Nek5000/core/coef.f:1507:20: COMMON /CTMP0/ XA(LX3,LY1,LZ1), XB(LX3,LY3,LZ1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (3136 vs 1580544 bytes) /home/xthomas/Nek5000/core/coef.f:1582:20: COMMON /CTMP0/ XA(LX1,LY2,LZ2), XB(LX1,LY1,LZ2) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (3136 vs 1580544 bytes) /home/xthomas/Nek5000/core/coef.f:1623:20: COMMON /CTMP0/ XA(LX1,LY2,LZ2), XB(LX1,LY1,LZ2) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (3136 vs 1580544 bytes) /home/xthomas/Nek5000/core/conduct.f:601:22: call fwght (qs,mask) ! qs is work array 1 Warning: Actual argument contains too few elements for dummy argument ‘mult’ (1/196) at (1) /home/xthomas/Nek5000/core/conduct.f:455:20: common /scruz/ ta(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (1580544 vs 790272 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/connect1.f -o obj/connect1.o /home/xthomas/Nek5000/core/connect1.f:322:20: COMMON /CTMP0/ ITMP(3,3,3) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (108 vs 368 bytes) /home/xthomas/Nek5000/core/connect1.f:1635:20: common /scruz/ snx(lxz) , sny(lxz) , snz(lxz) , efc(lxz) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (448 vs 2370816 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/connect2.f -o obj/connect2.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/dssum.f -o obj/dssum.o /home/xthomas/Nek5000/core/connect2.f:75:34: call cscan(string,'MESH DATA',9) 1 Warning: Character length of actual argument shorter than of dummy argument ‘key’ (9/132) at (1) /home/xthomas/Nek5000/core/connect2.f:1555:20: common /scrns/ tc(lx1,ly1,lz1,lelt),td(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (3951360 vs 2370832 bytes) /home/xthomas/Nek5000/core/connect2.f:1785:20: COMMON /CTMP0/ VO(LELT),XYZI(3,LELT),CG(3,LELT) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (28320 vs 456 bytes) /home/xthomas/Nek5000/core/connect2.f:1958:20: COMMON /CTMP0/ XCG(LELT),YCG(LELT),ZCG(LELT) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (12096 vs 28320 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/edgec.f -o obj/edgec.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/eigsolv.f -o obj/eigsolv.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/gauss.f -o obj/gauss.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/genxyz.f -o obj/genxyz.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier1.f -o obj/navier1.o /home/xthomas/Nek5000/core/genxyz.f:692:20: COMMON /CTMP0/ XCV(3,2,2),VN1(3),VN2(3) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (240 vs 3136 bytes) /home/xthomas/Nek5000/core/genxyz.f:1293:20: common /ctmp0/ xcb(2,2,2),ycb(2,2,2),zcb(2,2,2),w(ldw) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (6464 vs 3136 bytes) /home/xthomas/Nek5000/core/genxyz.f:1344:20: common /ctmp0/ w(ldw,2),zg(3) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (12568 vs 6464 bytes) /home/xthomas/Nek5000/core/genxyz.f:1354:20: common /cxyzl/ zgml(lx1,3),jx (lx1*3),jy (lx1*3),jz (lx1*3) 1 Warning: Named COMMON block ‘cxyzl’ at (1) shall be of the same size as elsewhere (2376 vs 1696 bytes) /home/xthomas/Nek5000/core/genxyz.f:329:21: COMMON /SRFCEL/ SUCCES 1 Warning: Named COMMON block ‘srfcel’ at (1) shall be of the same size as elsewhere (8 vs 4 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/makeq.f -o obj/makeq.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier0.f -o obj/navier0.o /home/xthomas/Nek5000/core/navier0.f:105:20: common /scruz/ xbar(ldim,lelt),ibar(lelt) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (10080 vs 2370816 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier2.f -o obj/navier2.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier3.f -o obj/navier3.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier4.f -o obj/navier4.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/prepost.f -o obj/prepost.o /home/xthomas/Nek5000/core/navier1.f:2739:27: call rotate_cyc (a,b,c,1) 1 Warning: Actual argument contains too few elements for dummy argument ‘r1’ (1/196) at (1) /home/xthomas/Nek5000/core/navier1.f:2741:27: call rotate_cyc (a,b,c,0) 1 Warning: Actual argument contains too few elements for dummy argument ‘r1’ (1/196) at (1) /home/xthomas/Nek5000/core/navier1.f:4233:23: call multd (work,inpx,rxm2,sxm2,txm2,1,iflg) 1 Warning: Actual argument contains too few elements for dummy argument ‘x’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:4235:23: call multd (work,inpy,rym2,sym2,tym2,2,iflg) 1 Warning: Actual argument contains too few elements for dummy argument ‘x’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:4238:26: call multd (work,inpz,rzm2,szm2,tzm2,3,iflg) 1 Warning: Actual argument contains too few elements for dummy argument ‘x’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:3357.4: 101 call conv1 (conv,fi) ! use the convective form 1 /home/xthomas/Nek5000/core/navier1.f:3342.72: if (.not. ifdeal(ifield)) goto 101 2 Warning: Legacy Extension: Label at (1) is not in the same block as the GOTO statement at (2) /home/xthomas/Nek5000/core/navier1.f:3129:56: call specmp(md(1,1,1,ie),nd,m1(1,1,1,ie),n1,im1d,im1dt,w) 1 Warning: Rank mismatch in argument ‘ba’ at (1) (scalar and rank-2) /home/xthomas/Nek5000/core/navier1.f:3133:56: call specmp(m1(1,1,1,ie),n1,md(1,1,1,ie),nd,imd1,imd1t,w) 1 Warning: Rank mismatch in argument ‘ba’ at (1) (scalar and rank-2) /home/xthomas/Nek5000/core/navier1.f:3160:52: call specmp(m1(1,1,1,ie),n1,md(1,1,1,ie),nd,pmd1,pmd1t,w) 1 Warning: Rank mismatch in argument ‘ba’ at (1) (scalar and rank-2) /home/xthomas/Nek5000/core/navier1.f:3423:26: call mapwp(dfid,nxd,dfi,nx1,-1) 1 Warning: Actual argument contains too few elements for dummy argument ‘m1’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:4259:17: call cdtp (outx,inpfld,rxm2,sxm2,txm2,1) 1 Warning: Actual argument contains too few elements for dummy argument ‘dtx’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:4260:17: call cdtp (outy,inpfld,rym2,sym2,tym2,2) 1 Warning: Actual argument contains too few elements for dummy argument ‘dtx’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:4262:20: $ call cdtp (outz,inpfld,rzm2,szm2,tzm2,3) 1 Warning: Actual argument contains too few elements for dummy argument ‘dtx’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:331:18: CALL MULTD (OUT1,INP,RXM2,SXM2,TXM2,1,iflg) 1 Warning: Actual argument contains too few elements for dummy argument ‘dx’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:332:18: CALL MULTD (OUT2,INP,RYM2,SYM2,TYM2,2,iflg) 1 Warning: Actual argument contains too few elements for dummy argument ‘dx’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:334:18: $CALL MULTD (OUT3,INP,RZM2,SZM2,TZM2,3,iflg) 1 Warning: Actual argument contains too few elements for dummy argument ‘dx’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:1907:33: CALL BDSYS (BDMAT,BDRHS,DTBD,NBD,NDIM) 1 Warning: Actual argument contains too few elements for dummy argument ‘dt’ (1/9) at (1) /home/xthomas/Nek5000/core/navier1.f:2011:27: CALL VELCHAR (VX,VXN,VXLAG,NBD,TAU,DTLAG) 1 Warning: Actual argument contains too few elements for dummy argument ‘vlag’ (197568/889056) at (1) /home/xthomas/Nek5000/core/navier1.f:2012:27: CALL VELCHAR (VY,VYN,VYLAG,NBD,TAU,DTLAG) 1 Warning: Actual argument contains too few elements for dummy argument ‘vlag’ (197568/889056) at (1) /home/xthomas/Nek5000/core/navier1.f:2014:27: $CALL VELCHAR (VZ,VZN,VZLAG,NBD,TAU,DTLAG) 1 Warning: Actual argument contains too few elements for dummy argument ‘vlag’ (197568/889056) at (1) /home/xthomas/Nek5000/core/navier1.f:2765:30: call rotate_cyc (a,b,c,1) 1 Warning: Actual argument contains too few elements for dummy argument ‘r1’ (1/196) at (1) /home/xthomas/Nek5000/core/navier1.f:2767:30: call rotate_cyc (a,b,c,0) 1 Warning: Actual argument contains too few elements for dummy argument ‘r1’ (1/196) at (1) /home/xthomas/Nek5000/core/navier1.f:3693:23: call velchar (vx,vxn,vxlag,nbd,tau,dtlag) 1 Warning: Actual argument contains too few elements for dummy argument ‘vn’ (1/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:3694:23: call velchar (vy,vyn,vylag,nbd,tau,dtlag) 1 Warning: Actual argument contains too few elements for dummy argument ‘vn’ (1/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:3696:23: $call velchar (vz,vzn,vzlag,nbd,tau,dtlag) 1 Warning: Actual argument contains too few elements for dummy argument ‘vn’ (1/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:3777:22: call conv1rk (du,dv,dw,u,v,w) 1 Warning: Actual argument contains too few elements for dummy argument ‘du’ (1/196) at (1) /home/xthomas/Nek5000/core/navier1.f:3977:22: call conv1rk2 (du,dv,dw,u,v,w,cu,cv,cw,beta,wk) 1 Warning: Actual argument contains too few elements for dummy argument ‘du’ (1/196) at (1) /home/xthomas/Nek5000/core/navier1.f:4111:20: CALL VELINIT (VEL1,VEL2,VEL3,ILAG) 1 Warning: Actual argument contains too few elements for dummy argument ‘vel1’ (196/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:4804:21: common /dgradl/ d(ldg),dt(ldg),dg(ldg),dgt(ldg),jgl(ldg),jgt(ldg) 1 Warning: Named COMMON block ‘dgradl’ at (1) shall be of the same size as elsewhere (396800 vs 512000 bytes) /home/xthomas/Nek5000/core/navier1.f:4871:21: common /dgradl/ d(ldg),dt(ldg),dg(ldg),dgt(ldg),jgl(ldg),jgt(ldg) 1 Warning: Named COMMON block ‘dgradl’ at (1) shall be of the same size as elsewhere (396800 vs 512000 bytes) /home/xthomas/Nek5000/core/navier1.f:2127:20: COMMON /CTMP1/ WORK (LXYZ1,LELT) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (790272 vs 14112 bytes) /home/xthomas/Nek5000/core/navier1.f:3306:20: COMMON /CTMP1/ MFI (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (2370816 vs 790272 bytes) /home/xthomas/Nek5000/core/navier1.f:575:20: common /ctmp1/ ta1 (lx1*ly1*lz1) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (4704 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier1.f:4335:20: common /ctmp1/ ur(lxyz),us(lxyz),ut(lxyz) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (4704 vs 2370816 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/speclib.f -o obj/speclib.o /home/xthomas/Nek5000/core/navier1.f:4228:20: common /ctmp0/ work (lx2,ly2,lz2,lelv) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (790272 vs 4704 bytes) /home/xthomas/Nek5000/core/navier1.f:1068:21: COMMON /CPRINT/ IFPRINT, IFHZPC 1 Warning: Named COMMON block ‘cprint’ at (1) shall be of the same size as elsewhere (8 vs 4 bytes) /home/xthomas/Nek5000/core/navier1.f:1186:21: COMMON /CPRINT/ IFPRINT 1 Warning: Named COMMON block ‘cprint’ at (1) shall be of the same size as elsewhere (4 vs 8 bytes) /home/xthomas/Nek5000/core/navier1.f:1184:20: COMMON /CTMP0/ TA (LX2,LY2,LZ2,LELV) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1580544 vs 790272 bytes) /home/xthomas/Nek5000/core/navier1.f:99:20: COMMON /SCRUZ/ TA1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier4.f:921:38: $ (m,mmx,ixb,ibb,ix,ib,ih1,ih2,ivar,n,ifvec,name6) 1 Warning: Actual argument contains too few elements for dummy argument ‘ivar’ (1/10) at (1) /home/xthomas/Nek5000/core/navier4.f:946:14: ivar(2) = m ! Update number of saved vectors 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1 /home/xthomas/Nek5000/core/navier4.f:1164:53: call proj_get_ivar(m,mmx,ixb,ibb,ix,ib,ih1,ih2,ivar,n,ifvec,name6) 1 Warning: Actual argument contains too few elements for dummy argument ‘ivar’ (1/10) at (1) /home/xthomas/Nek5000/core/navier4.f:1172:11: ivar(2) = m ! Update number of saved vectors 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 1 /home/xthomas/Nek5000/core/navier4.f:1312:26: call hmhzpf (name,u,r,h1,h2,mask,mult,imsh,tol,maxi,isd,binvm1) 1 Warning: Actual argument contains too few elements for dummy argument ‘u’ (1/196) at (1) /home/xthomas/Nek5000/core/navier4.f:1314:26: call hmhzpf (name,u,r,h1,h2,mask,mult,imsh,tol,maxi,isd,bintm1) 1 Warning: Actual argument contains too few elements for dummy argument ‘u’ (1/196) at (1) /home/xthomas/Nek5000/core/navier1.f:2352:20: COMMON /SCRMG/ TB1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (3161088 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier1.f:2345:20: COMMON /SCRNS/ RESV1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (5531904 vs 4741632 bytes) /home/xthomas/Nek5000/core/navier1.f:360:20: common /ctmp1/ wx (lx1*ly1*lz1) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (6272 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier4.f:216:21: COMMON /ORTHOX/ Pbar(LTOT2),Pnew(LTOT2),Pbrr(ltot2) 1 Warning: Named COMMON block ‘orthox’ at (1) shall be of the same size as elsewhere (2370816 vs 1580544 bytes) /home/xthomas/Nek5000/core/navier4.f:366:21: COMMON /ORTHOX/ Pbar(LTOT2),Pnew(LTOT2) 1 Warning: Named COMMON block ‘orthox’ at (1) shall be of the same size as elsewhere (1580544 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier4.f:30:21: COMMON /ORTHOX/ Pbar(LTOT2),Pnew(LTOT2) 1 Warning: Named COMMON block ‘orthox’ at (1) shall be of the same size as elsewhere (1580544 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier1.f:1763:20: COMMON /SCRUZ/ TA1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier4.f:119:21: COMMON /ORTHOX/ Pbar(LTOT2),Pnew(LTOT2) 1 Warning: Named COMMON block ‘orthox’ at (1) shall be of the same size as elsewhere (1580544 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier4.f:447:21: COMMON /ORTHOX/ Pbar(LTOT2),Pnew(LTOT2) 1 Warning: Named COMMON block ‘orthox’ at (1) shall be of the same size as elsewhere (1580544 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier1.f:1683:20: COMMON /SCRUZ/ TA1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier1.f:3444:20: common /ctmp0/ dudr(lx1,ly1,lz1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (4704 vs 1580544 bytes) /home/xthomas/Nek5000/core/navier1.f:3381:20: COMMON /CTMP0/ TA1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (4015872 vs 1580544 bytes) /home/xthomas/Nek5000/core/navier1.f:1389:20: COMMON /SCRNS/ TA1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) /home/xthomas/Nek5000/core/navier1.f:4407:20: COMMON /SCRNS/ SXZ(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) /home/xthomas/Nek5000/core/navier1.f:4403:20: COMMON /SCRUZ/ W1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier1.f:4477:20: COMMON /SCRNS/ EXZ(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) /home/xthomas/Nek5000/core/navier1.f:1597:20: COMMON /SCRUZ/ TA1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier1.f:210:20: COMMON /SCRMG/ WORK (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (790272 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier1.f:1156:20: COMMON /SCRMG/ TA (LX2,LY2,LZ2,LELV) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (1580544 vs 3161088 bytes) /home/xthomas/Nek5000/core/prepost.f:1101:37: iprefix = i_find_prefix(prefix,99) 1 Warning: Rank mismatch in argument ‘prefix’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier1.f:2257:20: COMMON /SCRCH/ TA2(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scrch’ at (1) shall be of the same size as elsewhere (790272 vs 1580544 bytes) /home/xthomas/Nek5000/core/prepost.f:1113:31: call restart_nfld( nfld, prefix ) ! Check for Restart option. 1 Warning: Rank mismatch in argument ‘prefix’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier1.f:3522:20: common /ctmp0/ dudr(lx1,ly1,lz1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (4704 vs 4015872 bytes) /home/xthomas/Nek5000/core/prepost.f:394:37: if (nid.eq.0) call dump_header(excode,p66,ierr) 1 Warning: Rank mismatch in argument ‘excodein’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/prepost.f:1393:32: call outpost2(v1,v2,v3,vp,vt,itmp,name3) 1 Warning: Actual argument contains too few elements for dummy argument ‘vt’ (1/98784) at (1) /home/xthomas/Nek5000/core/navier1.f:4032:20: COMMON /CTMP1/ WORK(LXYZ1,LELT) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (790272 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier1.f:4093:20: COMMON /CTMP1/ RKX1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (3161088 vs 2370816 bytes) /home/xthomas/Nek5000/core/navier1.f:4555:20: common /scruz/ u(lx1*ly1*lz1),v(lx1*ly1*lz1),w(lx1*ly1*lz1) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (4704 vs 3161088 bytes) /home/xthomas/Nek5000/core/prepost.f:845:20: common /SCRUZ/ ur1(lxo*lxo*lxo*lelt) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (33191424 vs 3161088 bytes) /home/xthomas/Nek5000/core/prepost.f:1735:20: common /SCRNS/ u4(2+lxo*lxo*lxo*6*lelt) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (33191432 vs 11063816 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/map2.f -o obj/map2.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/turb.f -o obj/turb.o /home/xthomas/Nek5000/core/map2.f:180:20: common /ctmp1/ map_st(lelg_sm) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (4 vs 326592 bytes) /home/xthomas/Nek5000/core/map2.f:181:21: common /vptsol/ iwork(0:lp) 1 Warning: Named COMMON block ‘vptsol’ at (1) shall be of the same size as elsewhere (4100 vs 57173760 bytes) /home/xthomas/Nek5000/core/turb.f:332:20: COMMON /SCRCH/ TA(LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrch’ at (1) shall be of the same size as elsewhere (790272 vs 448 bytes) /home/xthomas/Nek5000/core/turb.f:249:20: COMMON /SCRCH/ TA(LX1,LY1,LZ1,LELV),TB(LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrch’ at (1) shall be of the same size as elsewhere (1580544 vs 790272 bytes) /home/xthomas/Nek5000/core/turb.f:574:20: COMMON /SCRMG/ VISKIN(LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (790608 vs 3161088 bytes) /home/xthomas/Nek5000/core/turb.f:578:20: COMMON /SCRUZ/ V1(LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (2370816 vs 1580544 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/mvmesh.f -o obj/mvmesh.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/ic.f -o obj/ic.o /home/xthomas/Nek5000/core/mvmesh.f:615:20: COMMON /SCRUZ/ R1(LX1,LY1,LZ1),R2(LX1,LY1,LZ1),R3(LX1,LY1,LZ1) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (4704 vs 790272 bytes) /home/xthomas/Nek5000/core/mvmesh.f:508:20: common /scruz/ r1(lx1,ly1,lz1),r2(lx1,ly1,lz1),r3(lx1,ly1,lz1) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (4704 vs 790272 bytes) /home/xthomas/Nek5000/core/mvmesh.f:87:20: COMMON /SCRUZ/ FM1(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (3161088 vs 790272 bytes) /home/xthomas/Nek5000/core/mvmesh.f:116:20: COMMON /SCRUZ/ FMT(LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (1580544 vs 3161088 bytes) /home/xthomas/Nek5000/core/mvmesh.f:536:20: COMMON /SCRUZ/ R1(LX1,LY1,LZ1),R2(LX1,LY1,LZ1),R3(LX1,LY1,LZ1) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (4704 vs 3161088 bytes) /home/xthomas/Nek5000/core/mvmesh.f:574:20: COMMON /SCRUZ/ R1(LX1,LY1,LZ1),R2(LX1,LY1,LZ1),R3(LX1,LY1,LZ1) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (4704 vs 3161088 bytes) /home/xthomas/Nek5000/core/mvmesh.f:976:20: COMMON /SCRUZ/ XM3 (LX3,LY3,LZ3,LELT) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/ic.f:428:24: IF (INDX1(LINE,'PRESOLV',7).NE.0) THEN 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (7/132) at (1) /home/xthomas/Nek5000/core/ic.f:1466:15: I1=INDX1(S1,S2,L2) 1 Warning: Rank mismatch in argument ‘s1’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/ic.f:432:34: CALL CSPLIT(CDUM,LINE,' ',1) 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:449:33: IF (INDX_CUT(LINE,'U',1).NE.0) THEN 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:454:33: IF (INDX_CUT(LINE,'T',1).NE.0) THEN 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:462:36: IF (INDX_CUT(LINE,S2,2).NE.0) THEN 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (2/132) at (1) /home/xthomas/Nek5000/core/ic.f:1085:30: call csplit(fname,rsopt,' ',1) 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1087:22: if (indx1(fname,'.',1).eq.0) then 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1122:28: ITO=INDX_CUT(RSOPT,'TIME',4) 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (4/132) at (1) /home/xthomas/Nek5000/core/ic.f:1126:31: IT1=INDX_CUT(RSOPT,'=',1) 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1801:23: IFLDW=INDX1(WORK,' ',1)-1 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1138:27: IT1=INDX1(LINE,' ',1) 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1145:28: IXO=INDX_CUT(RSOPT,'X',1) 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1152:28: IVO=INDX_CUT(RSOPT,'U',1) 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1159:28: IPO=INDX_CUT(RSOPT,'P',1) 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1165:28: ITO=INDX_CUT(RSOPT,'T',1) 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1173:31: ipo=indx_cut(rsopt,s2,2) 1 Warning: Actual argument contains too few elements for dummy argument ‘s2’ (2/132) at (1) /home/xthomas/Nek5000/core/ic.f:2614:23: i1 = indx1(fname,eight,k) 1 Warning: Rank mismatch in argument ‘s1’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/ic.f:2314:24: if (indx2(hdr,132,'#std',4).eq.1) then 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (4/132) at (1) /home/xthomas/Nek5000/core/ic.f:2404:34: call parse_std_hdr_2006(hdr,rdcode) ! try the original header format 1 Warning: Actual argument contains too few elements for dummy argument ‘rlcode’ (10/20) at (1) /home/xthomas/Nek5000/core/ic.f:2291:28: call mapab4r(u(1,ei),wk(l ),nxr,1) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2292:28: call mapab4r(v(1,ei),wk(l+ nxyzw),nxr,1) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2294:28: $ call mapab4r(w(1,e),wk(l+2*nxyzw),nxr,1) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2296:36: call mapab (u(1,ei),wk(l ),nxr,1) 1 Warning: Type mismatch in argument ‘y’ at (1); passed REAL(4) to REAL(8) /home/xthomas/Nek5000/core/ic.f:2297:36: call mapab (v(1,ei),wk(l+ nxyzw),nxr,1) 1 Warning: Type mismatch in argument ‘y’ at (1); passed REAL(4) to REAL(8) /home/xthomas/Nek5000/core/ic.f:2299:36: $ call mapab (w(1,ei),wk(l+2*nxyzw),nxr,1) 1 Warning: Type mismatch in argument ‘y’ at (1); passed REAL(4) to REAL(8) /home/xthomas/Nek5000/core/ic.f:2502:38: call mfi_getv(xm1,ym1,zm1,wk,lwk,.false.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2504:38: call mfi_getv(xm1,ym1,zm1,wk,lwk,.true.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2515:38: call mfi_getv(bx,by,bz,wk,lwk,.false.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2518:38: call mfi_getv(vx,vy,vz,wk,lwk,.false.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2521:35: call mfi_getv(vx,vy,vz,wk,lwk,.true.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2142:28: call mapab4r(u(1,ei),wk(l ),nxr,1) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2144:36: call mapab (u(1,ei),wk(l ),nxr,1) 1 Warning: Type mismatch in argument ‘y’ at (1); passed REAL(4) to REAL(8) /home/xthomas/Nek5000/core/ic.f:2531:30: call mfi_gets(pm1,wk,lwk,.false.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2533:30: call mfi_gets(pm1,wk,lwk,.true.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2543:28: call mfi_gets(t,wk,lwk,.false.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2545:28: call mfi_gets(t,wk,lwk,.true.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2557:44: call mfi_gets(t(1,1,1,1,k+1),wk,lwk,.false.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:2559:44: call mfi_gets(t(1,1,1,1,k+1),wk,lwk,.true.) 1 Warning: Type mismatch in argument ‘wk’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:1418:27: i1_from_char = indx2(n10,10,s1,1)-1 1 Warning: Character length of actual argument shorter than of dummy argument ‘s1’ (10/132) at (1) /home/xthomas/Nek5000/core/ic.f:1245:25: call mapab4r(sdump(1,ieg),tdump,nxr,1) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:1279:28: call mapab4r(sdump(1,ie),tdump,nxr,1) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/ic.f:958:38: $ call copy(t(1,1,1,1,2),sdmp2(1,1),ntott) 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 5 /home/xthomas/Nek5000/core/ic.f:1833:23: IFLDW=INDX1(WORK,' ',1)-1 1 Warning: Character length of actual argument shorter than of dummy argument ‘s2’ (1/132) at (1) /home/xthomas/Nek5000/core/ic.f:1370:20: common /ctmp0/ xa(lxyzr) ,xb(lx1,ly1,lzr) ,xc(lxyzr) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (56096 vs 1568 bytes) /home/xthomas/Nek5000/core/ic.f:25:20: common /ctmp1/ work(lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (793408 vs 112000 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/gfldr.f -o obj/gfldr.o /home/xthomas/Nek5000/core/gfldr.f:121:30: call gfldr_getfld(pm1,dum,dum,1,ifldpos+1,ifbswp) 1 Warning: Rank mismatch in argument ‘out2’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/gfldr.f:127:39: call gfldr_getfld(t(1,1,1,1,1),dum,dum,1,ifldpos+1,ifbswp) 1 Warning: Rank mismatch in argument ‘out2’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/gfldr.f:132:44: call gfldr_getfld(t(1,1,1,1,i+1),dum,dum,1,ifldpos+1,ifbswp) 1 Warning: Rank mismatch in argument ‘out2’ at (1) (rank-1 and scalar) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/ssolv.f -o obj/ssolv.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/planx.f -o obj/planx.o /home/xthomas/Nek5000/core/ssolv.f:508:20: COMMON /SCRUZ/ W1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (3161088 vs 2370816 bytes) /home/xthomas/Nek5000/core/ssolv.f:737:20: COMMON /SCRMG/ DIVFLD (LX2,LY2,LZ2,LELV) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (1580544 vs 3161088 bytes) mpif77 -c -O3 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/math.f -o obj/math.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/mxm_wrapper.f -o obj/mxm_wrapper.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/hmholtz.f -o obj/hmholtz.o /home/xthomas/Nek5000/core/math.f:1544:21: call sort(xout,work,n) 1 Warning: Type mismatch in argument ‘ind’ at (1); passed REAL(8) to INTEGER(4) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/gfdm_par.f -o obj/gfdm_par.o /home/xthomas/Nek5000/core/hmholtz.f:800:26: call axhelm (w,p,h1,h2,imsh,isd) 1 Warning: Actual argument contains too few elements for dummy argument ‘helm1’ (1/196) at (1) /home/xthomas/Nek5000/core/hmholtz.f:1932:44: d(i1,i2, 1,e)=d(i1,i2, 1,e)-2*fw(5,e)*unt(i,5,e)*dzm1( 1, 1) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 1 /home/xthomas/Nek5000/core/hmholtz.f:1933:44: d(i1,i2,nx,e)=d(i1,i2,nx,e)-2*fw(6,e)*unt(i,6,e)*dzm1(nx,nx) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 1 /home/xthomas/Nek5000/core/hmholtz.f:1547:24: call setprec_dg(d,h1,h2,imsh,1) ! diag preconditioner 1 Warning: Actual argument contains too few elements for dummy argument ‘h1’ (1/196) at (1) /home/xthomas/Nek5000/core/hmholtz.f:2159:13: $ ,dxtm1,dym1,dzm1,nx1,ny1,nz1,if3d) 1 Warning: Rank mismatch in argument ‘drt’ at (1) (scalar and rank-2) /home/xthomas/Nek5000/core/hmholtz.f:1597:26: call hxdg (w,p,h1,h2) 1 Warning: Actual argument contains too few elements for dummy argument ‘h1’ (1/196) at (1) /home/xthomas/Nek5000/core/hmholtz.f:2051:15: $ ,dxtm1,dym1,dzm1,nx1,ny1,nz1,if3d) 1 Warning: Rank mismatch in argument ‘drt’ at (1) (scalar and rank-2) /home/xthomas/Nek5000/core/hmholtz.f:95:20: COMMON /CTMP1/ DUDR (LX1,LY1,LZ1) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (9408 vs 2370816 bytes) /home/xthomas/Nek5000/core/hmholtz.f:945:20: common /ctmp0/ w(lx1,ly1,lz1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1568 vs 451584 bytes) /home/xthomas/Nek5000/core/hmholtz.f:540:22: COMMON /CPRINT/ IFPRINT 1 Warning: Named COMMON block ‘cprint’ at (1) shall be of the same size as elsewhere (4 vs 8 bytes) /home/xthomas/Nek5000/core/hmholtz.f:542:20: COMMON /CTMP0/ W1 (LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1580544 vs 451584 bytes) /home/xthomas/Nek5000/core/hmholtz.f:1135:20: COMMON /CTMP0/ W(LX1,LX1),aa(lx1,lx1),bb(lx1,lx1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (794976 vs 1580544 bytes) /home/xthomas/Nek5000/core/hmholtz.f:1042:20: COMMON /CTMP0/ W(LX1,LX1),aa(lx1,lx1),bb(lx1,lx1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (4704 vs 1580544 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/gfdm_op.f -o obj/gfdm_op.o /home/xthomas/Nek5000/core/gfdm_op.f:176:43: call build_D1d_d(eigv,bw,dglgt,wglgt,wgl,eigs,length,nel,nxv,nxp 1 Warning: Rank mismatch in argument ‘wm1’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/gfdm_op.f:103:53: $ ,cb0(1),cbn(1),dglgt,wglgt,wgl,bw,lbw) 1 Warning: Rank mismatch in argument ‘wgl’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/gfdm_op.f:118:53: $ ,cb0(2),cbn(2),dglgt,wglgt,wgl,bw,lbw) 1 Warning: Rank mismatch in argument ‘wgl’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/gfdm_op.f:132:56: $ ,cb0(3),cbn(3),dglgt,wglgt,wgl,bw,lbw) 1 Warning: Rank mismatch in argument ‘wgl’ at (1) (scalar and rank-1) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/gfdm_solve.f -o obj/gfdm_solve.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/subs1.f -o obj/subs1.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/subs2.f -o obj/subs2.o /home/xthomas/Nek5000/core/subs1.f:1956:20: call axhmsf (a1,a2,a3,p1,p2,p3,h1,h2,matmod) 1 Warning: Actual argument contains too few elements for dummy argument ‘au1’ (1/196) at (1) /home/xthomas/Nek5000/core/subs1.f:2002:43: call axstrs_nds(a1,a2,a3,w1,w2,w3,h1,h2,matmod,nel) 1 Warning: Rank mismatch in argument ‘h1’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/subs1.f:2159:49: call get_local_crs_galerkin_strs(a,ncr,nxc,h1,h2,matmod) 1 Warning: Rank mismatch in argument ‘h1’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/subs1.f:54:42: if (ifcrsl) call set_up_h1_crs_strs(h1,h2,ifield,matmod) 1 Warning: Rank mismatch in argument ‘h1’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/subs1.f:108:23: call axhmsf (ap1,ap2,ap3,p1,p2,p3,h1,h2,matmod) 1 Warning: Actual argument contains too few elements for dummy argument ‘au1’ (1/196) at (1) /home/xthomas/Nek5000/core/subs1.f:1769:38: call fcsum2(usum_f,asum_f,u,e,f) 1 Warning: Actual argument contains too few elements for dummy argument ‘x’ (1/196) at (1) /home/xthomas/Nek5000/core/subs1.f:1945:20: call axhmsf (a1,a2,a3,p1,p2,p3,h1,h2,matmod) 1 Warning: Actual argument contains too few elements for dummy argument ‘au1’ (1/196) at (1) /home/xthomas/Nek5000/core/subs1.f:797:20: common /ctmp0/ stc(lx1,ly1,lz1),sigst(lx1,ly1),dtst(lx1,ly1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (4704 vs 790272 bytes) /home/xthomas/Nek5000/core/subs1.f:913:20: common /ctmp0/ xfm1(lx1,ly1),yfm1(lx1,ly1),zfm1(lx1,ly1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (4704 vs 790272 bytes) /home/xthomas/Nek5000/core/subs1.f:914:20: common /ctmp1/ drm1(lx1,lx1),drtm1(lx1,ly1) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (6272 vs 1580544 bytes) /home/xthomas/Nek5000/core/subs1.f:916:20: common /scrmg/ xrm1(lx1,ly1),yrm1(lx1,ly1),zrm1(lx1,ly1) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (9408 vs 3161088 bytes) /home/xthomas/Nek5000/core/subs1.f:867:20: common /ctmp0/ xfm1(lx1),yfm1(lx1),t1xf(lx1),t1yf(lx1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (448 vs 790272 bytes) /home/xthomas/Nek5000/core/subs1.f:474:20: common /ctmp0/ x(lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1580544 vs 790272 bytes) /home/xthomas/Nek5000/core/subs1.f:471:20: common /ctmp1/ u(lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (2370816 vs 1580544 bytes) /home/xthomas/Nek5000/core/subs1.f:687:20: common /scrmg/ zrm1 (lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/subs1.f:1792:20: common /ctmp0/ w(lx1,ly1,lz1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1568 vs 1580544 bytes) /home/xthomas/Nek5000/core/subs1.f:1583:20: common /ctmp1/ txx(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (3161088 vs 2370816 bytes) /home/xthomas/Nek5000/core/subs1.f:2477:20: common /ctmp0/ phi(lx1,ly1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1568 vs 1580544 bytes) /home/xthomas/Nek5000/core/subs1.f:1524:20: common /scrsf/ t11(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘scrsf’ at (1) shall be of the same size as elsewhere (3161088 vs 2370816 bytes) /home/xthomas/Nek5000/core/subs1.f:1607:20: common /scrsf/ ur(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘scrsf’ at (1) shall be of the same size as elsewhere (2370816 vs 3161088 bytes) /home/xthomas/Nek5000/core/subs1.f:1879:20: common /ctmp0/ gnum(lx1*ly1*lz1*lelt) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (790272 vs 1580544 bytes) /home/xthomas/Nek5000/core/subs2.f:44:20: common /ctmp0/ exz(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (1580544 vs 1568 bytes) /home/xthomas/Nek5000/core/subs2.f:40:20: common /ctmp1/ exx(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (3161088 vs 2370816 bytes) /home/xthomas/Nek5000/core/subs2.f:736:20: common /screv/ hfmask(lx1,lz1,6,lelt) 1 Warning: Named COMMON block ‘screv’ at (1) shall be of the same size as elsewhere (1128960 vs 1580544 bytes) /home/xthomas/Nek5000/core/subs2.f:770:20: common /screv/ hfmask(lx1,lz1,6,lelt) 1 Warning: Named COMMON block ‘screv’ at (1) shall be of the same size as elsewhere (1128960 vs 1580544 bytes) /home/xthomas/Nek5000/core/subs2.f:1804:20: common /ctmp0/ wa(lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (790272 vs 1580544 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/genbox.f -o obj/genbox.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/gmres.f -o obj/gmres.o /home/xthomas/Nek5000/core/genbox.f:36:20: call getrv(rfld,1,iend,7) 1 Warning: Rank mismatch in argument ‘r’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/genbox.f:162:37: $ call getr2(xc,yc,iend,7) 1 Warning: Rank mismatch in argument ‘r1’ at (1) (scalar and rank-2) /home/xthomas/Nek5000/core/gmres.f:581:27: call dd_swap_vals(v1,v,gsh_dd) 1 Warning: Actual argument contains too few elements for dummy argument ‘v0’ (1/98784) at (1) /home/xthomas/Nek5000/core/gmres.f:781:35: call set_up_fast_1D_sem_op_a(s,eb0,eb1,l,r,ll,lm,lr,ah) 1 Warning: Actual argument contains too few elements for dummy argument ‘g’ (1/256) at (1) /home/xthomas/Nek5000/core/gmres.f:783:35: call set_up_fast_1D_sem_op_b(g,bb0,bb1,l,r,ll,lm,lr,bh) 1 Warning: Actual argument contains too few elements for dummy argument ‘g’ (2/256) at (1) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/hsmg.f -o obj/hsmg.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/convect.f -o obj/convect.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/induct.f -o obj/induct.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/perturb.f -o obj/perturb.o /home/xthomas/Nek5000/core/hsmg.f:490:30: call hsmg_schwarz_dssum(mg_work,l) 1 Warning: Rank mismatch in argument ‘u’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/hsmg.f:906:24: call hsmg_do_fast(e,r, 1 Warning: Rank mismatch in argument ‘e’ at (1) (rank-2 and scalar) /home/xthomas/Nek5000/core/hsmg.f:493:31: call hsmg_fdm(mg_work(i),mg_work,l) ! Do the local solves 1 Warning: Rank mismatch in argument ‘r’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/hsmg.f:1272:10: $ e,mg_schwarz_wt(mg_schwarz_wt_index(l,mg_fld)),mg_nh(l)) 1 Warning: Rank mismatch in argument ‘e’ at (1) (rank-3 and scalar) /home/xthomas/Nek5000/core/hsmg.f:1274:10: $ e,mg_schwarz_wt(mg_schwarz_wt_index(l,mg_fld)),mg_nh(l)) 1 Warning: Rank mismatch in argument ‘e’ at (1) (rank-4 and scalar) /home/xthomas/Nek5000/core/hsmg.f:451:31: call hsmg_schwarz_wt (e,l) ! e := W e 1 Warning: Rank mismatch in argument ‘e’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/hsmg.f:547:30: call hsmg_schwarz_dssum(mg_work,l) 1 Warning: Rank mismatch in argument ‘u’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/hsmg.f:551:31: call hsmg_fdm(mg_work(i),mg_work,l) 1 Warning: Rank mismatch in argument ‘r’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/hsmg.f:2847:63: $ (mg_g(p_g),mg_g(l_g),ng,nx,ny,nz,nxl,nyl,nzl,e,l,w) 1 Warning: Type mismatch in argument ‘e’ at (1); passed INTEGER(4) to REAL(8) /home/xthomas/Nek5000/core/hsmg.f:2850:63: $ (mg_b(p_b),mg_b(l_b) ,nx,ny,nz,nxl,nyl,nzl,e,l,w) 1 Warning: Type mismatch in argument ‘e’ at (1); passed INTEGER(4) to REAL(8) /home/xthomas/Nek5000/core/hsmg.f:2174:20: common /hsmgw/ work(lx1*lx1) 1 Warning: Named COMMON block ‘hsmgw’ at (1) shall be of the same size as elsewhere (1568 vs 12288 bytes) /home/xthomas/Nek5000/core/hsmg.f:2743:20: common /ctmp0/ wi(2*lx1+4) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (256 vs 4704 bytes) /home/xthomas/Nek5000/core/hsmg.f:315:20: common /hsmgw/ work((lx1+2)*(lx1+2)) 1 Warning: Named COMMON block ‘hsmgw’ at (1) shall be of the same size as elsewhere (2048 vs 12288 bytes) /home/xthomas/Nek5000/core/hsmg.f:279:20: common /hsmgw/ work((lx1+2)*(lx1+2)) 1 Warning: Named COMMON block ‘hsmgw’ at (1) shall be of the same size as elsewhere (2048 vs 12288 bytes) /home/xthomas/Nek5000/core/hsmg.f:807:20: common /ctmp0/ b(2*lxm*lxm),w(2*lxm*lxm) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (8192 vs 4704 bytes) /home/xthomas/Nek5000/core/hsmg.f:1413:20: common /scrvh/ h1 (lx1,ly1,lz1,lelv), 1 Warning: Named COMMON block ‘scrvh’ at (1) shall be of the same size as elsewhere (1580544 vs 2370816 bytes) /home/xthomas/Nek5000/core/hsmg.f:1891:20: common /scrvh/ h1 (lx1,ly1,lz1,lelv), 1 Warning: Named COMMON block ‘scrvh’ at (1) shall be of the same size as elsewhere (1580544 vs 2370816 bytes) /home/xthomas/Nek5000/core/hsmg.f:2259:20: common /scrvh/ h1 (lx1,ly1,lz1,lelt), 1 Warning: Named COMMON block ‘scrvh’ at (1) shall be of the same size as elsewhere (1580544 vs 2370816 bytes) /home/xthomas/Nek5000/core/hsmg.f:2924:20: common /ctmp0/ w(100000) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (800000 vs 8192 bytes) /home/xthomas/Nek5000/core/convect.f:692:55: call set_convect_cons(c(ix,1),c(iy,1),c(iz,1),u,v,w) 1 Warning: Actual argument contains too few elements for dummy argument ‘ux’ (1/196) at (1) /home/xthomas/Nek5000/core/convect.f:974:59: cs(i,e)=rx(i,4,e)*fx(i)+rx(i,5,e)*fy(i)+rx(i,6,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:974:43: cs(i,e)=rx(i,4,e)*fx(i)+rx(i,5,e)*fy(i)+rx(i,6,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:975:59: ct(i,e)=rx(i,7,e)*fx(i)+rx(i,8,e)*fy(i)+rx(i,9,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (9 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:975:43: ct(i,e)=rx(i,7,e)*fx(i)+rx(i,8,e)*fy(i)+rx(i,9,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:975:27: ct(i,e)=rx(i,7,e)*fx(i)+rx(i,8,e)*fy(i)+rx(i,9,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:694:55: call set_convect_new (c(ix,1),c(iy,1),c(iz,1),u,v,w) 1 Warning: Actual argument contains too few elements for dummy argument ‘ux’ (1/196) at (1) /home/xthomas/Nek5000/core/convect.f:170:20: call int_vel (bmst,tau,bmass,n,nc,cs,nid) ! B(t^n-1) 1 Warning: Rank mismatch in argument ‘c_t’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/convect.f:1849:28: call grad_rstd_ta (ud,ur,us,ut,lxd,if3d) ! GL->GL gradt 1 Warning: Rank mismatch in argument ‘du’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/induct.f:1553:32: call intp_rstd(rx(1,5,e),sym1(1,1,1,e),nx1,nxd,if3d,0) ! 0 --> fwd 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:1975:25: call full2face(uf ,u ) 1 Warning: Actual argument contains too few elements for dummy argument ‘vol_ary’ (1/98784) at (1) /home/xthomas/Nek5000/core/convect.f:1737:25: call full2face(uf ,u ) 1 Warning: Actual argument contains too few elements for dummy argument ‘vol_ary’ (1/98784) at (1) /home/xthomas/Nek5000/core/convect.f:1791:26: call add_face2full( du , uf) ! <--- this stmt. 1 Warning: Actual argument contains too few elements for dummy argument ‘vol_ary’ (1/98784) at (1) /home/xthomas/Nek5000/core/induct.f:1554:32: call intp_rstd(rx(1,6,e),szm1(1,1,1,e),nx1,nxd,if3d,0) ! 0 --> fwd 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1555:32: call intp_rstd(rx(1,7,e),txm1(1,1,1,e),nx1,nxd,if3d,0) ! 0 --> fwd 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1556:32: call intp_rstd(rx(1,8,e),tym1(1,1,1,e),nx1,nxd,if3d,0) ! 0 --> fwd 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1557:32: call intp_rstd(rx(1,9,e),tzm1(1,1,1,e),nx1,nxd,if3d,0) ! 0 --> fwd 1 Warning: Array reference at (1) is out of bounds (9 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1380:59: $ rx(i,4,e)*zm(i,1)+rx(i,5,e)*zm(i,2)+rx(i,6,e)*zm(i,3) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1380:41: $ rx(i,4,e)*zm(i,1)+rx(i,5,e)*zm(i,2)+rx(i,6,e)*zm(i,3) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1382:59: $ rx(i,7,e)*zm(i,1)+rx(i,8,e)*zm(i,2)+rx(i,9,e)*zm(i,3) 1 Warning: Array reference at (1) is out of bounds (9 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1382:41: $ rx(i,7,e)*zm(i,1)+rx(i,8,e)*zm(i,2)+rx(i,9,e)*zm(i,3) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1382:23: $ rx(i,7,e)*zm(i,1)+rx(i,8,e)*zm(i,2)+rx(i,9,e)*zm(i,3) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1409:59: $ rx(i,4,e)*zp(i,1)+rx(i,5,e)*zp(i,2)+rx(i,6,e)*zp(i,3) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:1793:26: call fbinvert ( du ) ! Right now works only for undeformed 1 Warning: Actual argument contains too few elements for dummy argument ‘rhs’ (1/98784) at (1) /home/xthomas/Nek5000/core/induct.f:1409:41: $ rx(i,4,e)*zp(i,1)+rx(i,5,e)*zp(i,2)+rx(i,6,e)*zp(i,3) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1411:59: $ rx(i,7,e)*zp(i,1)+rx(i,8,e)*zp(i,2)+rx(i,9,e)*zp(i,3) 1 Warning: Array reference at (1) is out of bounds (9 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1411:41: $ rx(i,7,e)*zp(i,1)+rx(i,8,e)*zp(i,2)+rx(i,9,e)*zp(i,3) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1411:23: $ rx(i,7,e)*zp(i,1)+rx(i,8,e)*zp(i,2)+rx(i,9,e)*zp(i,3) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1080:40: $ ,vproj(1,5),ivproj(1,5),binvm1) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:299:58: if (param(99).eq.1) call conv_rhs_dg (du,u,c) 1 Warning: Actual argument contains too few elements for dummy argument ‘c’ (1/604800) at (1) /home/xthomas/Nek5000/core/convect.f:1534:25: call full2face(uf ,u ) 1 Warning: Actual argument contains too few elements for dummy argument ‘vol_ary’ (1/98784) at (1) /home/xthomas/Nek5000/core/convect.f:1573:26: call add_face2full( du , uf) ! <--- this stmt. 1 Warning: Actual argument contains too few elements for dummy argument ‘vol_ary’ (1/98784) at (1) /home/xthomas/Nek5000/core/convect.f:1575:26: call fbinvert ( du ) ! Right now works only for undeformed 1 Warning: Actual argument contains too few elements for dummy argument ‘rhs’ (1/98784) at (1) /home/xthomas/Nek5000/core/convect.f:212:26: call int_vel (bmst,th,bmass,n,nc,cs,nid) ! B(n-1/2) 1 Warning: Rank mismatch in argument ‘c_t’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/convect.f:227:26: call int_vel (bmst,tau1,bmass,n,nc,cs,nid) ! B^-1(n) 1 Warning: Rank mismatch in argument ‘c_t’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/convect.f:127:40: $ ,u1,r1,r2,r3,r4,bmsk,bdivw,bdwt,bmass,bmst,bm,bmlag) 1 Warning: Rank mismatch in argument ‘bmass’ at (1) (scalar and rank-2) /home/xthomas/Nek5000/core/convect.f:777:60: tr(i,2)=rx(i,4,e)*fx(i)+rx(i,5,e)*fy(i)+rx(i,6,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:1084:40: $ ,vproj(1,6),ivproj(1,6),binvm1) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:902:21: call incomprn (vx,vy,vz,pr) ! project U onto div-free space 1 Warning: Rank mismatch in argument ‘ux’ at (1) (scalar and rank-4) /home/xthomas/Nek5000/core/convect.f:777:44: tr(i,2)=rx(i,4,e)*fx(i)+rx(i,5,e)*fy(i)+rx(i,6,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:778:60: tr(i,3)=rx(i,7,e)*fx(i)+rx(i,8,e)*fy(i)+rx(i,9,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (9 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:778:44: tr(i,3)=rx(i,7,e)*fx(i)+rx(i,8,e)*fy(i)+rx(i,9,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 2 /home/xthomas/Nek5000/core/convect.f:778:28: tr(i,3)=rx(i,7,e)*fx(i)+rx(i,8,e)*fy(i)+rx(i,9,e)*fz(i) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 2 /home/xthomas/Nek5000/core/induct.f:913:21: call incomprn (bx,by,bz,pm) ! project B onto div-free space 1 Warning: Rank mismatch in argument ‘ux’ at (1) (scalar and rank-4) /home/xthomas/Nek5000/core/induct.f:469:16: call curl(lf,b1,b2,b3,.false.,w1,w2) 1 Warning: Actual argument contains too few elements for dummy argument ‘vort’ (197568/296352) at (1) /home/xthomas/Nek5000/core/induct.f:474:35: c1 = lf(i,2)*b3(i) - lf(i,3)*b2(i) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/induct.f:475:19: c2 = lf(i,3)*b1(i) - lf(i,1)*b3(i) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/induct.f:479:14: lf(i,3) = c3 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/convect.f:1885:25: call full2face(uf ,u ) 1 Warning: Actual argument contains too few elements for dummy argument ‘vol_ary’ (1/98784) at (1) /home/xthomas/Nek5000/core/induct.f:304:20: common /scrns/ w1 (lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (5531904 vs 4741632 bytes) /home/xthomas/Nek5000/core/convect.f:1206:20: common /ctmp1/ ur(ldd),us(ldd),ut(ldd),ju(ldd),ud(ldd),tu(ldd) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (19200 vs 12800 bytes) /home/xthomas/Nek5000/core/convect.f:1518:20: common /scrdg/ uf(lf),uxf(lf),uyf(lf),uzf(lf),upwind_wgt(lf) 1 Warning: Named COMMON block ‘scrdg’ at (1) shall be of the same size as elsewhere (1128960 vs 1355456 bytes) /home/xthomas/Nek5000/core/induct.f:151:20: common /scrns/ ta1 (lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (2370816 vs 5531904 bytes) /home/xthomas/Nek5000/core/convect.f:1722:20: common /scrdg/ uf(lf),uxf(lf),uyf(lf),uzf(lf),upwind_wgt(lf) 1 Warning: Named COMMON block ‘scrdg’ at (1) shall be of the same size as elsewhere (1129664 vs 1355456 bytes) /home/xthomas/Nek5000/core/induct.f:1332:20: common /scrns/ wk(2*ltd) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (54208 vs 5531904 bytes) /home/xthomas/Nek5000/core/induct.f:24:20: common /scrns/ resv1 (lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) /home/xthomas/Nek5000/core/convect.f:1001:20: common /ctmp1/ work(lxyz1,lelt) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (790272 vs 19200 bytes) /home/xthomas/Nek5000/core/induct.f:1609:20: common /scrns/ ta1 (lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) /home/xthomas/Nek5000/core/convect.f:38:20: common /scruz/ cx (lx1*ly1*lz1*lelt) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (3161088 vs 2370816 bytes) /home/xthomas/Nek5000/core/convect.f:834:20: common /scrcv/ uf(ltd),cf(ltd),cu(ltd) 1 Warning: Named COMMON block ‘scrcv’ at (1) shall be of the same size as elsewhere (19200 vs 32000 bytes) /home/xthomas/Nek5000/core/convect.f:1050:20: common /cchar/ ct_vx(0:lorder) ! time for each slice in c_vx() 1 Warning: Named COMMON block ‘cchar’ at (1) shall be of the same size as elsewhere (32 vs 40 bytes) /home/xthomas/Nek5000/core/convect.f:1110:20: common /cchar/ ct_vx(0:lorder) ! time for each slice in c_vx() 1 Warning: Named COMMON block ‘cchar’ at (1) shall be of the same size as elsewhere (32 vs 40 bytes) /home/xthomas/Nek5000/core/convect.f:1112:20: common /scruz/ phi (lx1*ly1*lz1*lelt) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (1580544 vs 3161088 bytes) /home/xthomas/Nek5000/core/perturb.f:366:26: $ +rx(i,7,e)*utz(i)) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:364:26: $ +rx(i,7,e)*uty(i))+ 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:362:26: $ +rx(i,7,e)*utx(i))+ 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:372:26: $ +rx(i,8,e)*utz(i)) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:371:49: $ fz(i)*(rx(i,2,e)*urz(i)+rx(i,5,e)*usz(i) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:370:26: $ +rx(i,8,e)*uty(i))+ 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:369:49: $ fy(i)*(rx(i,2,e)*ury(i)+rx(i,5,e)*usy(i) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:368:26: $ +rx(i,8,e)*utx(i))+ 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:367:51: uf5(i)=fx(i)*(rx(i,2,e)*urx(i)+rx(i,5,e)*usx(i) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:378:26: $ +rx(i,9,e)*utz(i)) 1 Warning: Array reference at (1) is out of bounds (9 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:377:49: $ fz(i)*(rx(i,3,e)*urz(i)+rx(i,6,e)*usz(i) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:376:26: $ +rx(i,9,e)*uty(i))+ 1 Warning: Array reference at (1) is out of bounds (9 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:375:49: $ fy(i)*(rx(i,3,e)*ury(i)+rx(i,6,e)*usy(i) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:374:26: $ +rx(i,9,e)*utx(i))+ 1 Warning: Array reference at (1) is out of bounds (9 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:373:51: uf6(i)=fx(i)*(rx(i,3,e)*urx(i)+rx(i,6,e)*usx(i) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 2 /home/xthomas/Nek5000/core/perturb.f:799:20: COMMON /SCRNS/ TA (LX1,LY1,LZ1,LELT) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (2370816 vs 1580544 bytes) /home/xthomas/Nek5000/core/perturb.f:724:20: common /scruz/ ta (lx1,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (3161088 vs 790272 bytes) /home/xthomas/Nek5000/core/perturb.f:40:20: COMMON /SCRNS/ RESV1 (LX1,LY1,LZ1,LELV) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 2370816 bytes) /home/xthomas/Nek5000/core/perturb.f:869:20: common /scrns/ w1 (lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (5531904 vs 4741632 bytes) /home/xthomas/Nek5000/core/perturb.f:439:20: common /scrns/ ta1 (lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (2370816 vs 5531904 bytes) /home/xthomas/Nek5000/core/perturb.f:222:20: COMMON /SCRNS/ TA1 (LX1*LY1*LZ1*LELV) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) /home/xthomas/Nek5000/core/perturb.f:143:20: COMMON /SCRNS/ TA1 (LX1*LY1*LZ1*LELV) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier5.f -o obj/navier5.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier6.f -o obj/navier6.o /home/xthomas/Nek5000/core/navier6.f:93:60: call set_fem_data_l2(nel_proc,ndom,n_o,x,y,z,tri) 1 Warning: Type mismatch in argument ‘p’ at (1); passed INTEGER(4) to REAL(8) /home/xthomas/Nek5000/core/navier6.f:50:20: common /ctmp0/ nv_to_t(2*ltotd) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (790272 vs 3136 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier7.f -o obj/navier7.o /home/xthomas/Nek5000/core/navier7.f:411:38: call swap (bcsr(n1),nzero,n2,inverse) 1 Warning: Type mismatch in argument ‘temp’ at (1); passed INTEGER(4) to REAL(8) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/navier8.f -o obj/navier8.o /home/xthomas/Nek5000/core/navier8.f:1737:33: call ituple_sort(tuple,m,n,ky,nk,ind,wtuple) 1 Warning: Rank mismatch in argument ‘key’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/navier8.f:16:43: call setvert3d(glo_num,ngv,nx,nel,vertex,ifcenter) 1 Warning: Actual argument contains too few elements for dummy argument ‘vertex’ (1/8) at (1) /home/xthomas/Nek5000/core/navier8.f:18:43: call setvert2d(glo_num,ngv,nx,nel,vertex,ifcenter) 1 Warning: Actual argument contains too few elements for dummy argument ‘vertex’ (1/4) at (1) /home/xthomas/Nek5000/core/navier8.f:1185:29: call specmpn(b,nb,a,na,ibat,iba,if3d,w,ldw) 1 Warning: Rank mismatch in argument ‘ba’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier8.f:52:34: call map_f_to_c_l2_bilin(uf,vf,w) 1 Warning: Actual argument contains too few elements for dummy argument ‘uf’ (1/98784) at (1) /home/xthomas/Nek5000/core/navier8.f:1146:29: call specmpn(a,na,b,nb,iba,ibat,if3d,w,ldw) 1 Warning: Rank mismatch in argument ‘ba’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier8.f:54:31: call map_c_to_f_l2_bilin(uf,uc,w) 1 Warning: Actual argument contains too few elements for dummy argument ‘uf’ (1/98784) at (1) /home/xthomas/Nek5000/core/navier8.f:921:29: call specmpn(a,na,b,nb,iba,ibat,if3d,w,ldw) 1 Warning: Rank mismatch in argument ‘ba’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier8.f:597:26: call a_crs_3d(a_loc,h1,h2,x,y,z,ie) 1 Warning: Actual argument contains too few elements for dummy argument ‘a’ (16/64) at (1) /home/xthomas/Nek5000/core/navier8.f:1361:34: call map_f_to_c_h1_bilin(vc,uf) ! additive Schwarz 1 Warning: Actual argument contains too few elements for dummy argument ‘uf’ (1/98784) at (1) /home/xthomas/Nek5000/core/navier8.f:1371:31: call map_c_to_f_h1_bilin(uf,uc) 1 Warning: Actual argument contains too few elements for dummy argument ‘uf’ (1/98784) at (1) /home/xthomas/Nek5000/core/navier8.f:2309:29: call specmpn(a,na,b,nb,iba,ibat,if3d,w,ldw) 1 Warning: Rank mismatch in argument ‘ba’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier8.f:1454:20: common /ctmp0/ w(2,2,lx1),v(2,ly1,lz1,lelt) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (113344 vs 116032 bytes) /home/xthomas/Nek5000/core/navier8.f:1762:21: common /scrmg/ edge,enum,fnum 1 Warning: Named COMMON block ‘scrmg’ at (1) shall be of the same size as elsewhere (84672 vs 24192 bytes) /home/xthomas/Nek5000/core/navier8.f:1767:21: common /scrns/ ind,etuple 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (967680 vs 322560 bytes) /home/xthomas/Nek5000/core/navier8.f:108:20: common /scrns/ w(7*lx1*ly1*lz1*lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (2765952 vs 967680 bytes) /home/xthomas/Nek5000/core/navier8.f:109:21: common /vptsol/ a(27*lx1*ly1*lz1*lelv) 1 Warning: Named COMMON block ‘vptsol’ at (1) shall be of the same size as elsewhere (21337344 vs 57173760 bytes) /home/xthomas/Nek5000/core/navier8.f:1342:21: common /scrpre/ uc(lcr*lelt) 1 Warning: Named COMMON block ‘scrpre’ at (1) shall be of the same size as elsewhere (16128 vs 19264 bytes) /home/xthomas/Nek5000/core/navier8.f:1344:21: common /scrxxt/ cmlt(lcr,lelv),mask(lcr,lelv) 1 Warning: Named COMMON block ‘scrxxt’ at (1) shall be of the same size as elsewhere (24192 vs 32256 bytes) /home/xthomas/Nek5000/core/navier5.f:1376:51: call gaujordf (Lj,nx,nx,indr,indc,ipiv,ierr,rmult) 1 Warning: Rank mismatch in argument ‘rmult’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/navier5.f:1845:27: s21 = sij(j1,j2,1,4,e) 1 Warning: Array reference at (1) is out of bounds (4 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:1846:27: s31 = sij(j1,j2,1,6,e) 1 Warning: Array reference at (1) is out of bounds (6 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:1848:27: s12 = sij(j1,j2,1,4,e) 1 Warning: Array reference at (1) is out of bounds (4 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:1850:27: s32 = sij(j1,j2,1,5,e) 1 Warning: Array reference at (1) is out of bounds (5 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:1852:27: s13 = sij(j1,j2,1,6,e) 1 Warning: Array reference at (1) is out of bounds (6 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:1853:27: s23 = sij(j1,j2,1,5,e) 1 Warning: Array reference at (1) is out of bounds (5 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:2884:31: call y_avg_buff(ur,w ,ut,c2,'ub',icount) 1 Warning: Rank mismatch in argument ‘c2’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier5.f:2885:31: call y_avg_buff(wr,wp,wt,c2,'u2',icount) 1 Warning: Rank mismatch in argument ‘c2’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier5.f:2892:31: call y_avg_buff(wr,wt,wp,c2,'uv',icount) 1 Warning: Rank mismatch in argument ‘c2’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier5.f:2894:31: call y_ins_buff(ur,w ,ut,c2,'ui',icount) 1 Warning: Rank mismatch in argument ‘c2’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier5.f:2928:31: call z_avg_buff(u ,v ,w ,c2,'ub',icount) 1 Warning: Rank mismatch in argument ‘c2’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier5.f:2929:31: call z_avg_buff(wr,wt,wp,c2,'u2',icount) 1 Warning: Rank mismatch in argument ‘c2’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier5.f:2936:31: call z_avg_buff(wr,wt,wp,c2,'uv',icount) 1 Warning: Rank mismatch in argument ‘c2’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier5.f:2938:31: call z_ins_buff(u ,v ,w ,c2,'ui',icount) 1 Warning: Rank mismatch in argument ‘c2’ at (1) (scalar and rank-1) /home/xthomas/Nek5000/core/navier5.f:3081:14: xt(l,3) = z(i,j,k) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/navier5.f:3242:30: s21 = sij(j1,j2,1,4,e) 1 Warning: Array reference at (1) is out of bounds (4 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:3243:30: s31 = sij(j1,j2,1,6,e) 1 Warning: Array reference at (1) is out of bounds (6 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:3245:30: s12 = sij(j1,j2,1,4,e) 1 Warning: Array reference at (1) is out of bounds (4 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:3247:30: s32 = sij(j1,j2,1,5,e) 1 Warning: Array reference at (1) is out of bounds (5 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:3249:30: s13 = sij(j1,j2,1,6,e) 1 Warning: Array reference at (1) is out of bounds (6 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:3250:30: s23 = sij(j1,j2,1,5,e) 1 Warning: Array reference at (1) is out of bounds (5 > 3) in dimension 4 /home/xthomas/Nek5000/core/navier5.f:3714:34: call z_average (ua,u,w1,w2) 1 Warning: Rank mismatch in argument ‘u’ at (1) (rank-4 and scalar) /home/xthomas/Nek5000/core/navier5.f:3715:31: call z_average_transpose(u,ua) ! distribute ua to each z-plane 1 Warning: Rank mismatch in argument ‘u’ at (1) (rank-4 and scalar) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/fast3d.f -o obj/fast3d.o /home/xthomas/Nek5000/core/navier5.f:2756:21: common /scravg/ u (lyavg) 1 Warning: Named COMMON block ‘scravg’ at (1) shall be of the same size as elsewhere (560 vs 7840 bytes) /home/xthomas/Nek5000/core/navier5.f:2702:21: common /scravg/ u (lyavg) 1 Warning: Named COMMON block ‘scravg’ at (1) shall be of the same size as elsewhere (560 vs 7840 bytes) /home/xthomas/Nek5000/core/navier5.f:248:20: common /scrns/ pm1(lx1,ly1,lz1,lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (5531904 vs 3951360 bytes) /home/xthomas/Nek5000/core/navier5.f:794:20: common /ctmp0/ ur,us,ut,vr,vs,vt,wr,ws,wt 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (14112 vs 11090968 bytes) /home/xthomas/Nek5000/core/navier5.f:1951:20: common /scrns/ sij (lx1*ly1*lz1*6*lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) /home/xthomas/Nek5000/core/navier5.f:1958:20: common /scruz/ ur(lr),us(lr),ut(lr) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (14112 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier5.f:2315:21: common /scravg/ ua(lt),va(lt),wa(lt),pa(lt) 1 Warning: Named COMMON block ‘scravg’ at (1) shall be of the same size as elsewhere (3161088 vs 7840 bytes) /home/xthomas/Nek5000/core/navier5.f:2316:20: common /scrsf/ ta(lt,ldimt) 1 Warning: Named COMMON block ‘scrsf’ at (1) shall be of the same size as elsewhere (790272 vs 2370816 bytes) /home/xthomas/Nek5000/core/fast3d.f:553:46: call set_up_1D_geom(dx,lbc,rbc,ll,lm,lr,z,nz) 1 Warning: Actual argument contains too few elements for dummy argument ‘z’ (1/2) at (1) /home/xthomas/Nek5000/core/navier5.f:2489:21: common /scravg/ ua(lyavg) 1 Warning: Named COMMON block ‘scravg’ at (1) shall be of the same size as elsewhere (336 vs 3161088 bytes) /home/xthomas/Nek5000/core/fast3d.f:1390:33: call set_up_fast_1D_sem_op(s,eb0,eb1,l,r,ll,lm,lr,bh,dgl,0) 1 Warning: Actual argument contains too few elements for dummy argument ‘g’ (1/196) at (1) /home/xthomas/Nek5000/core/fast3d.f:932:49: call set_up_1D_geom_ax(dx,lbc,rbc,ll,lm,lr,z,y,nz) 1 Warning: Actual argument contains too few elements for dummy argument ‘z’ (1/2) at (1) /home/xthomas/Nek5000/core/navier5.f:2514:21: common /scravg/ w1(lyavg) 1 Warning: Named COMMON block ‘scravg’ at (1) shall be of the same size as elsewhere (224 vs 3161088 bytes) /home/xthomas/Nek5000/core/fast3d.f:1585:27: llr(e) = l(1,2,2,e)-lmr(e) 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 3 /home/xthomas/Nek5000/core/fast3d.f:1586:27: lrr(e) = l(n,2,2,e)-lmr(e) 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 3 /home/xthomas/Nek5000/core/fast3d.f:1587:27: lls(e) = l(2,1,2,e)-lms(e) 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 3 /home/xthomas/Nek5000/core/fast3d.f:1588:27: lrs(e) = l(2,n,2,e)-lms(e) 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 3 /home/xthomas/Nek5000/core/navier5.f:3107:20: common /scrns/ sij (lx1*ly1*lz1*6*lelv) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (4741632 vs 5531904 bytes) /home/xthomas/Nek5000/core/navier5.f:3114:20: common /scruz/ ur(lr),us(lr),ut(lr) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (14112 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier5.f:3301:20: common /scrns/ xb(lt,lelt),yb(lt,lelt),zb(lt,lelt) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (2370816 vs 5531904 bytes) /home/xthomas/Nek5000/core/navier5.f:3302:20: common /scruz/ tmsk(lt,lelt),tmlt(lt,lelt),w1(lt),w2(lt) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (1583680 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier5.f:3710:21: common /scravg/ ua(lyavg) 1 Warning: Named COMMON block ‘scravg’ at (1) shall be of the same size as elsewhere (4704 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier5.f:3814:21: common /scravg/ ua(lyavg) 1 Warning: Named COMMON block ‘scravg’ at (1) shall be of the same size as elsewhere (336 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier5.f:3910:21: common /scravg/ ua(lyavg) 1 Warning: Named COMMON block ‘scravg’ at (1) shall be of the same size as elsewhere (336 vs 3161088 bytes) /home/xthomas/Nek5000/core/navier5.f:4063:20: common /ctmp0/ f(lxx),wk1(lxyz),wk2(lxyz),wk3(lxyz) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (6272 vs 11090968 bytes) /home/xthomas/Nek5000/core/navier5.f:4086:20: common /ctmp0/ f(lxx),wk1(lxyz),wk2(lxyz),wk3(lxyz),diag(lx1) 1 Warning: Named COMMON block ‘ctmp0’ at (1) shall be of the same size as elsewhere (6384 vs 11090968 bytes) /home/xthomas/Nek5000/core/navier5.f:4113:20: common /ctmp1/ w(lt,lelt),ur(lt),us(lt),ut(lt),w1(2*lt) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (798112 vs 4704 bytes) /home/xthomas/Nek5000/core/navier5.f:4517:20: common /ctmp1/ w(lw) 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (4704 vs 798112 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/fasts.f -o obj/fasts.o /home/xthomas/Nek5000/core/fasts.f:343:24: l(i,j,2,e)=1 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 3 /home/xthomas/Nek5000/core/fasts.f:384:46: w(i,j,1,3,eb)=1.0/l(i+1,j+1,2,e) 1 Warning: Array reference at (1) is out of bounds (2 > 1) in dimension 3 mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/calcz.f -o obj/calcz.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER /home/xthomas/Nek5000/core/byte.c -o obj/byte.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER /home/xthomas/Nek5000/core/chelpers.c -o obj/chelpers.o /home/xthomas/Nek5000/core/byte.c: In function ‘byte_read_’: /home/xthomas/Nek5000/core/byte.c:232:6: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(float),*n,fp); ^ mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/byte_mpi.f -o obj/byte_mpi.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/postpro.f -o obj/postpro.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/intp_usr.f -o obj/intp_usr.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/cvode_driver.f -o obj/cvode_driver.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER /home/xthomas/Nek5000/core/nek_comm.c -o obj/nek_comm.o /home/xthomas/Nek5000/core/postpro.f:297:21: gije(i,k,3) = dj*( 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 3 /home/xthomas/Nek5000/core/postpro.f:588:26: call gen_int_gz(j,jt,w,n,z,m) 1 Warning: Type mismatch in argument ‘j’ at (1); passed INTEGER(4) to REAL(8) /home/xthomas/Nek5000/core/postpro.f:617:26: call gen_int_gz(j,jt,w,n,z,m) 1 Warning: Type mismatch in argument ‘j’ at (1); passed INTEGER(4) to REAL(8) /home/xthomas/Nek5000/core/postpro.f:770:25: xyz(li,3,kb) = zm1(1+i*nxs,1+j*nys,1+k*nzs,e) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:804:34: buf2(5) = xyz(5,1,kb) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:805:34: buf2(6) = xyz(6,1,kb) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:806:34: buf2(7) = xyz(7,1,kb) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:807:34: buf2(8) = xyz(8,1,kb) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:814:34: buf2(13)= xyz(5,2,kb) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:815:34: buf2(14)= xyz(6,2,kb) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:816:34: buf2(15)= xyz(7,2,kb) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:817:34: buf2(16)= xyz(8,2,kb) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:819:36: buf2(17)= xyz(1,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:820:36: buf2(18)= xyz(2,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:821:36: buf2(19)= xyz(3,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:822:36: buf2(20)= xyz(4,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:824:34: buf2(21)= xyz(5,3,kb) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:824:36: buf2(21)= xyz(5,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:825:34: buf2(22)= xyz(6,3,kb) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:825:36: buf2(22)= xyz(6,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:826:34: buf2(23)= xyz(7,3,kb) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:826:36: buf2(23)= xyz(7,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:827:34: buf2(24)= xyz(8,3,kb) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:827:36: buf2(24)= xyz(8,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:852:34: buf(5) = xyz(5,1,kb) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:853:34: buf(6) = xyz(6,1,kb) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:854:34: buf(7) = xyz(7,1,kb) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:855:34: buf(8) = xyz(8,1,kb) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:862:34: buf(13) = xyz(5,2,kb) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:863:34: buf(14) = xyz(6,2,kb) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:864:34: buf(15) = xyz(7,2,kb) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:865:34: buf(16) = xyz(8,2,kb) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:867:36: buf(17) = xyz(1,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:868:36: buf(18) = xyz(2,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:869:36: buf(19) = xyz(3,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:870:36: buf(20) = xyz(4,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:872:34: buf(21) = xyz(5,3,kb) 1 Warning: Array reference at (1) is out of bounds (5 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:872:36: buf(21) = xyz(5,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:873:34: buf(22) = xyz(6,3,kb) 1 Warning: Array reference at (1) is out of bounds (6 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:873:36: buf(22) = xyz(6,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:874:34: buf(23) = xyz(7,3,kb) 1 Warning: Array reference at (1) is out of bounds (7 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:874:36: buf(23) = xyz(7,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:875:34: buf(24) = xyz(8,3,kb) 1 Warning: Array reference at (1) is out of bounds (8 > 4) in dimension 1 /home/xthomas/Nek5000/core/postpro.f:875:36: buf(24) = xyz(8,3,kb) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:1212:25: xyz(li,3,kb) = zm1(1+i*nxs,1+j*nys,1+k*nzs,e) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:1243:46: write(10,'(4g15.7)')(xyz(ic,3,kb),ic=1,4) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:1247:46: write(10,'(4g15.7)')(xyz(ic,3,kb),ic=5,8) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 2 /home/xthomas/Nek5000/core/postpro.f:1607:27: & pts(3,1),ndim,npts) 1 Warning: Array reference at (1) is out of bounds (3 > 2) in dimension 1 mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/vprops.f -o obj/vprops.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/makeq_aux.f -o obj/makeq_aux.o /home/xthomas/Nek5000/core/postpro.f:1373:20: common /scrns/ vbc(5,6,lblock),wk(5*6*lblock) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (240000 vs 3161088 bytes) /home/xthomas/Nek5000/core/postpro.f:1374:20: common /scruz/ ibc(6,lblock) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (12000 vs 790272 bytes) /home/xthomas/Nek5000/core/postpro.f:1277:20: common /scrns/ vcurve(5,12,lblock),wk(5*12*lblock) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (480000 vs 3161088 bytes) /home/xthomas/Nek5000/core/postpro.f:1278:20: common /scruz/ icurve(12,lblock) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (24000 vs 790272 bytes) /home/xthomas/Nek5000/core/postpro.f:1459:20: common /scrns/ x3(27),y3(27),z3(27),xyz(3,3) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (720 vs 3161088 bytes) /home/xthomas/Nek5000/core/postpro.f:1172:20: common /scrns/ xyz(lv,ldim,lblock),wk(lv*ldim*lblock) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (128000 vs 3161088 bytes) /home/xthomas/Nek5000/core/postpro.f:1173:20: common /scruz/ igr(lblock) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (4000 vs 790272 bytes) /home/xthomas/Nek5000/core/postpro.f:1031:20: common /scrns/ vbc(5,6,lblock),wk(5*6*lblock) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (240000 vs 3161088 bytes) /home/xthomas/Nek5000/core/postpro.f:1032:20: common /scruz/ ibc(6,lblock) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (12000 vs 790272 bytes) /home/xthomas/Nek5000/core/postpro.f:920:20: common /scrns/ vcurve(5,12,lblock),wk(5*12*lblock) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (480000 vs 3161088 bytes) /home/xthomas/Nek5000/core/postpro.f:921:20: common /scruz/ icurve(12,lblock) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (24000 vs 790272 bytes) /home/xthomas/Nek5000/core/postpro.f:727:20: common /scrns/ xyz(lv,ldim,lblock),wk(lv*ldim*lblock) 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (128000 vs 3161088 bytes) /home/xthomas/Nek5000/core/postpro.f:728:20: common /scruz/ igr(lblock) 1 Warning: Named COMMON block ‘scruz’ at (1) shall be of the same size as elsewhere (4000 vs 790272 bytes) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/papi.f -o obj/papi.o /home/xthomas/Nek5000/core/papi.f:5:25: call getflops_papi(flops,mflops) 1 Warning: Type mismatch in argument ‘flops’ at (1); passed INTEGER(8) to REAL(8) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/3rd_party/nek_in_situ.f -o obj/nek_in_situ.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/readat_new.f -o obj/readat_new.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/reader_re2.f -o obj/reader_re2.o /home/xthomas/Nek5000/core/reader_re2.f:150:20: common /ctmp1/ vi 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (411264 vs 205632 bytes) /home/xthomas/Nek5000/core/reader_re2.f:147:20: common /scrns/ bufr 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (387072 vs 193536 bytes) /home/xthomas/Nek5000/core/reader_re2.f:82:20: common /ctmp1/ vi 1 Warning: Named COMMON block ‘ctmp1’ at (1) shall be of the same size as elsewhere (40320 vs 411264 bytes) /home/xthomas/Nek5000/core/reader_re2.f:79:20: common /scrns/ bufr 1 Warning: Named COMMON block ‘scrns’ at (1) shall be of the same size as elsewhere (36288 vs 387072 bytes) mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER /home/xthomas/Nek5000/core/3rd_party/finiparser.c -o obj/finiparser.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER /home/xthomas/Nek5000/core/3rd_party/iniparser.c -o obj/iniparser.o mpicc -c -O2 -DMPI -DUNDERSCORE -DTIMER /home/xthomas/Nek5000/core/3rd_party/dictionary.c -o obj/dictionary.o mpif77 -c -O3 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/mxm_std.f -o obj/mxm_std.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/comm_mpi.f -o obj/comm_mpi.o mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/core/singlmesh.f -o obj/singlmesh.o mpif77 -c -O0 -DMPI -DUNDERSCORE -DTIMER /home/xthomas/Nek5000/core/3rd_party/blas.f -o obj/blas.o /home/xthomas/Nek5000/core/3rd_party/blas.f:9764:15: GO TO IGO,(120,150,180,210) 1 Warning: Deleted feature: Assigned GOTO statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:9770:72: Warning: Deleted feature: ASSIGN statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:9782:72: Warning: Deleted feature: ASSIGN statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:9795:72: Warning: Deleted feature: ASSIGN statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:9806:72: Warning: Deleted feature: ASSIGN statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:17277:15: GO TO IGO,(120,150,180,210) 1 Warning: Deleted feature: Assigned GOTO statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:17283:72: Warning: Deleted feature: ASSIGN statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:17295:72: Warning: Deleted feature: ASSIGN statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:17308:72: Warning: Deleted feature: ASSIGN statement at (1) /home/xthomas/Nek5000/core/3rd_party/blas.f:17319:72: Warning: Deleted feature: ASSIGN statement at (1) mpif77 -c -O0 -DMPI -DUNDERSCORE -DTIMER /home/xthomas/Nek5000/core/3rd_party/dsygv.f -o obj/dsygv.o /home/xthomas/Nek5000/core/comm_mpi.f:331:17: call bcast(item,isize) 1 Warning: Type mismatch in argument ‘buf’ at (1); passed INTEGER(4) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:1065:28: call crecv(type,w,bytes) 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:1087:38: if (nid .ne. 0) call csend(type,x,bytes,parent,nullpid) 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:1098:22: call csend(typer,x,bytes,jnid,nullpid) 1 Warning: Type mismatch in argument ‘mtype’ at (1); passed REAL(8) to INTEGER(4) /home/xthomas/Nek5000/core/comm_mpi.f:1100:22: call crecv(typer,x,bytes) 1 Warning: Type mismatch in argument ‘mtype’ at (1); passed REAL(8) to INTEGER(4) /home/xthomas/Nek5000/core/comm_mpi.f:845:15: call gop(tmsg,t1,'+ ',1) 1 Warning: Rank mismatch in argument ‘x’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/comm_mpi.f:850:24: msg = irecv(1,y,1) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to INTEGER(4) /home/xthomas/Nek5000/core/comm_mpi.f:851:22: call csend(1,x,1,nodeb,0) ! Initiate send, to synch. 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:856:27: msg = irecv(i,y,len) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to INTEGER(4) /home/xthomas/Nek5000/core/comm_mpi.f:857:25: call csend(i,x,len,nodeb,0) 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:866:22: call crecv(1,y,1) ! Initiate send, to synch. 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:867:22: call csend(1,x,1,nodea,0) 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:871:25: call crecv(i,y,len) 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:872:25: call csend(i,x,len,nodea,0) 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:880:15: call gop(tmsg,t1,'+ ',1) 1 Warning: Rank mismatch in argument ‘x’ at (1) (rank-1 and scalar) /home/xthomas/Nek5000/core/comm_mpi.f:774:31: msg = irecv(itest,y,1) 1 Warning: Type mismatch in argument ‘x’ at (1); passed REAL(8) to INTEGER(4) /home/xthomas/Nek5000/core/comm_mpi.f:775:29: call csend(itest,x,1,nodeb,0) ! Initiate send, to synch. 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:802:29: call crecv(itest,y,1) ! Initiate send, to synch. 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) /home/xthomas/Nek5000/core/comm_mpi.f:803:29: call csend(itest,x,1,nodea,0) 1 Warning: Type mismatch in argument ‘buf’ at (1); passed REAL(8) to REAL(4) mpif77 -c -O2 -fdefault-real-8 -fdefault-double-8 -cpp -DMPI -DUNDERSCORE -DTIMER -I/home/xthomas/Nek5000/run/lowMach_test -I/home/xthomas/Nek5000/core -I./ /home/xthomas/Nek5000/run/lowMach_test/lowMach_test.f -o obj/lowMach_test.o mpif77 -o nek5000 obj/lowMach_test.o obj/drive.o obj/drive1.o obj/drive2.o obj/plan5.o obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o obj/turb.o obj/mvmesh.o obj/ic.o obj/gfldr.o obj/ssolv.o obj/planx.o obj/math.o obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o obj/hsmg.o obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o obj/navier6.o obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o obj/calcz.o obj/byte.o obj/chelpers.o obj/byte_mpi.o obj/postpro.o obj/intp_usr.o obj/cvode_driver.o obj/nek_comm.o obj/vprops.o obj/makeq_aux.o obj/papi.o obj/nek_in_situ.o obj/readat_new.o obj/reader_re2.o obj/finiparser.o obj/iniparser.o obj/dictionary.o obj/mxm_std.o obj/comm_mpi.o obj/singlmesh.o obj/blas.o obj/dsygv.o -L/home/xthomas/Nek5000/3rd_party/gslib/src -lgs ############################################################# # Compilation successful! # ############################################################# text data bss dec hex filename 2320801 14924 754395016 756730741 2d1acb75 nek5000 And I can never reach a final result to show with vislt. My OS is linux ubuntu 16.04 LTS. During the installing and compiling steps, I also installed gfortran,libopenmpi-dev libmpich2-dev for mpif77 to continue the process. Could you please give me some advices to solve these problems? Thank you very much! Looking forward your earlier reply. Best regards Haoran in Xi'an China -- 鞠浩然西安交通大学能动学院核科学与技术系陕西省西安市咸宁西路28号邮编：710049 JU Haoran Department of Nuclear Science and Technology, School of Energy and Power Engineering, Xi'an Jiaotong University, 710049. No.28 Xianning West Road, Xi'an, Shanxi Province, China. Email: juhaoran012(a)163.com

1 1

Re: [Nek5000-users] neknek new version
by nek5000-users＠lists.mcs.anl.gov 26 Sep '17

26 Sep '17

"I guess what you are trying to do is to have one domain that is periodic and use that to drive the flow in another domain, which is presumably inflow-outflow?" Yes. This is what I mean. And with old nek version (September 2015) my function works very well, but now (after upgrade) it doesn't interpolate velocity slice. In my function I take two slice from each of session, change bc from P->inP and v->inv, then set intflag = 1 for face with inv and inP and then i change bc back to P and v as it was before. ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dear Vatslav, It's not clear to me how your approach should function if your intent is to change a Periodic BC to an overlapping-domain-interpolation one. I guess what you are trying to do is to have one domain that is periodic and use that to drive the flow in another domain, which is presumably inflow-outflow? If that is your goal, you might find that recirculating BCs would be of value (possibly a bit more efficient), depending on your setup. If we understand the objective we might be able to help. Best, Paul From: Nek5000-users <nek5000-users-bounces(a)lists.mcs.anl.gov <https://vk.com/[email protected]>> on behalf of nek5000-users(a)lists.mcs.anl.gov <https://vk.com/[email protected]> < nek5000-users(a)lists.mcs.anl.gov <https://vk.com/[email protected]>> Sent: Tuesday, September 26, 2017 3:06:33 AM To: nek5000-users(a)lists.mcs.anl.gov <https://vk.com/[email protected]> Subject: [Nek5000-users] neknek new version Hi, Neks. I use neknek script in my simulation. I write the function like set_intflag in multimesh.f to find special bc and mark it: nfaces = 2*ndim nel = nelfld(ifield) nflag=nel*nfaces call izero(intflag,nflag) do j=1,ifield do e=1,nel do f=1,nfaces if ( session.eq.'pipe_per1' ) then if ( cbc(f,e,j).eq.'P ' ) intflag(f,e) = 1 endif if ( session.eq.'pipe_per2' ) then if ( cbc(f,e,j).eq.'v ' ) intflag(f,e) = 1 endif enddo enddo enddo ( from periodic bc in one nek-session to inlet bc in another nek-session ). So, it works very well on old version of nek, but on the latest version of Nek5000 i can't interpolate boundary slice between two session in such way anymore. And I absolutely no idea why. Can anyone say how it can be fixed? Regard, Vatslav С уважением, Владимир Рыженьков

1 0

neknek new version
by nek5000-users＠lists.mcs.anl.gov 26 Sep '17

26 Sep '17

Hi, Neks. I use neknek script in my simulation. I write the function like set_intflag in multimesh.f to find special bc and mark it: nfaces = 2*ndim nel = nelfld(ifield) nflag=nel*nfaces call izero(intflag,nflag) do j=1,ifield do e=1,nel do f=1,nfaces if ( session.eq.'pipe_per1' ) then if ( cbc(f,e,j).eq.'P ' ) intflag(f,e) = 1 endif if ( session.eq.'pipe_per2' ) then if ( cbc(f,e,j).eq.'v ' ) intflag(f,e) = 1 endif enddo enddo enddo ( from periodic bc in one nek-session to inlet bc in another nek-session ). So, it works very well on old version of nek, but on the latest version of Nek5000 i can't interpolate boundary slice between two session in such way anymore. And I absolutely no idea why. Can anyone say how it can be fixed? Regard, Vatslav

1 1

Simulation hanging at 'mapping elements to processors'
by nek5000-users＠lists.mcs.anl.gov 25 Sep '17

25 Sep '17

Hello, I am trying to run a simulation that has ~500,000 elements on 1280 processors with lx1=4 for debugging purposes. My simulation hangs after outputting 'mapping elements to processors’. I generated the mesh with Cubit and then used the exo2nek script to get the re2 file. Genmap runs fine on the re2 file. I was wondering if this problem has been encountered in the past, and what I could do to fix it. Thanks, Marco

1 9

Planar average subroutines
by nek5000-users＠lists.mcs.anl.gov 25 Sep '17

25 Sep '17

Dear Neks, I need to calculate the average UY velocity in the top face of my domain, every timestep. That face is the only one with "v " BC, so I think it is easier to identify the elements. Now I need to do it in 2D, but soon I'll have to do it in 3D. I've been reading something about planar_average_z subroutine, and also planar_average_xy (for exemple). In navier5 I found only planar_average_z. Any idea of how could use this subroutine to calculate the UY average in the top face? Thank you. Regards, Juan Pablo.

1 1