September 2018 - petsc-dev - mailman3.cels.anl.gov

Re: [petsc-dev] Windows CI
by Jed Brown 29 Sep '18

29 Sep '18

I just created an account/logged in. Looks like we need to add an appveyor.yml file, but it's reasonably complicated and I don't have time to tinker extensively just now. This would be quite valuable though because I don't think anyone develops PETSc on Windows. https://www.appveyor.com/docs/appveyor-yml/ Stefano Zampini <stefano.zampini(a)gmail.com> writes: > Anyone already tried/succeeded in getting an AppVeyor CI for PETSc? > https://www.appveyor.com/ > > -- > Stefano

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Re: [petsc-dev] Test output broken for test sets
by Matthew Knepley 27 Sep '18

27 Sep '18

On Wed, Sep 26, 2018 at 1:40 PM Scott Kruger <kruger(a)txcorp.com> wrote: > > Matt, > > I'm a bit confused as to what you want to do here. > > I put this block in ksp/ksp/examples/test/ex1.c just for testing. > > I get: > > config/gmakegentest.py > Warning: > /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_6_tet.out > > not found. > Warning: > /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_6_hex.out > > not found. > > which I think is what you are complaining about. > > But I I change the faces argument to this: > > args: -use_generator -faces {{2,2,2 1,3,5 3,4,7}separate} > Ah, I did not understand the "separate" argument. Thanks for clearing that up, Matt > > Then I get this: > > config/gmakegentest.py > Warning: > /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-3__4__7_6_hex.out > > not found. > Warning: > /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-1__3__5_6_hex.out > > not found. > Warning: > /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-2__2__2_6_hex.out > > not found. > Warning: > /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-3__4__7_6_tet.out > > not found. > Warning: > /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-1__3__5_6_tet.out > > not found. > Warning: > /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-2__2__2_6_tet.out > > not found. > > > Is this what you really want? > > Scott > > P.S. Jakub: Your issue is separate. I'll have a fix pushed shortly. > > On 9/24/18 7:26 AM, Matthew Knepley wrote: > > At least on my machine, this does not work correctly > > > > testset: > > nsize: {{1 2 4}} > > args: -use_generator -faces {{2,2,2 1,3,5 3,4,7}} > > args: -interpolate -distribute -interpolate_after_distribute {{0 1}} > > args: -dm_plex_check_pointsf > > test: > > #TODO some combinations generate wrong SF > > suffix: 6_tet > > requires: ctetgen > > args: -cell_simplex 1 -dm_plex_generator ctetgen > > test: > > suffix: 6_hex > > args: -cell_simplex 0 > > If I give REPLACE=1, it makes a single output file 6_hex.out and > > 6_tet.out for all the test, with the output of the last test in it. > > > > Thanks, > > > > Matt > > > > -- > > What most experimenters take for granted before they begin their > > experiments is infinitely more interesting than any results to which > > their experiments lead. > > -- Norbert Wiener > > > > https://www.cse.buffalo.edu/~knepley/ > > <http://www.cse.buffalo.edu/%7Eknepley/> > > -- > Tech-X Corporation kruger(a)txcorp.com > 5621 Arapahoe Ave, Suite A Phone: (720) 974-1841 > Boulder, CO 80303 Fax: (303) 448-7756 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>

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Re: [petsc-dev] tiny issues in test harness
by Scott Kruger 26 Sep '18

26 Sep '18

Fix for #1 is merged into next. See ecc1beb596a8093f7509ca38016ed30c93784193 For #2, I think it'll work if you use double quotes and egrep. If you do this: cd $PETSC_DIR/src/sys/examples/test grep filter *.c I think you'll see some examples of complicated filters that Barry got working. Scott On 8/14/18 4:05 AM, Jakub Kruzik wrote: > Hi all, > > I started using test harness in PERMON and find out a couple of issues > with it. > > 1) multiple "args:" keywords in "test:" in "testset:" are ignored except > for the last "args:" keyword. See attached MWE and check it with > > python2 ${PETSC_DIR}/config/testparse.py -t ex1.c -v 3 > > 2) single quotes can't be used in "filter:" keyword. E.g. filter: grep > 'r =' generates > > petsc_testrun ... 'grep 'r ='' > > resulting in filter being "grep r". Might be worth mentioning this in > dev manual and/or putting guards into parsing/petsc_testrun. > > Best, > > Jakub > -- Tech-X Corporation kruger(a)txcorp.com 5621 Arapahoe Ave, Suite A Phone: (720) 974-1841 Boulder, CO 80303 Fax: (303) 448-7756

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Re: [petsc-dev] Test output broken for test sets
by Scott Kruger 26 Sep '18

26 Sep '18

Matt, I'm a bit confused as to what you want to do here. I put this block in ksp/ksp/examples/test/ex1.c just for testing. I get: > config/gmakegentest.py Warning: /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_6_tet.out not found. Warning: /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_6_hex.out not found. which I think is what you are complaining about. But I I change the faces argument to this: args: -use_generator -faces {{2,2,2 1,3,5 3,4,7}separate} Then I get this: > config/gmakegentest.py Warning: /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-3__4__7_6_hex.out not found. Warning: /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-1__3__5_6_hex.out not found. Warning: /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-2__2__2_6_hex.out not found. Warning: /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-3__4__7_6_tet.out not found. Warning: /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-1__3__5_6_tet.out not found. Warning: /Users/kruger/ptroot/upstream/petsc/src/sys/examples/tests/output/ex1_faces-2__2__2_6_tet.out not found. Is this what you really want? Scott P.S. Jakub: Your issue is separate. I'll have a fix pushed shortly. On 9/24/18 7:26 AM, Matthew Knepley wrote: > At least on my machine, this does not work correctly > > testset: > nsize: {{1 2 4}} > args: -use_generator -faces {{2,2,2 1,3,5 3,4,7}} > args: -interpolate -distribute -interpolate_after_distribute {{0 1}} > args: -dm_plex_check_pointsf > test: > #TODO some combinations generate wrong SF > suffix: 6_tet > requires: ctetgen > args: -cell_simplex 1 -dm_plex_generator ctetgen > test: > suffix: 6_hex > args: -cell_simplex 0 > If I give REPLACE=1, it makes a single output file 6_hex.out and > 6_tet.out for all the test, with the output of the last test in it. > > Thanks, > > Matt > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener > > https://www.cse.buffalo.edu/~knepley/ > <http://www.cse.buffalo.edu/%7Eknepley/> -- Tech-X Corporation kruger(a)txcorp.com 5621 Arapahoe Ave, Suite A Phone: (720) 974-1841 Boulder, CO 80303 Fax: (303) 448-7756

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Re: [petsc-dev] PETSC_HAVE_COMPLEX vs PETSC_USE_COMPLEX
by Hapla Vaclav 26 Sep '18

26 Sep '18

Oh I see, thanks for clarification. > 26. 9. 2018 v 19:20, Jed Brown <jed(a)jedbrown.org>: > > PETSC_HAVE_COMPLEX means that PetscComplex is defined. > PETSC_USE_COMPLEX means that PetscScalar is complex. > > Hapla Vaclav <vaclav.hapla(a)erdw.ethz.ch> writes: > >> Hello >> >> grep -R PETSC_HAVE_COMPLEX $PETSC_DIR/src >> gives quite some occurrences. >> It should be PETSC_USE_COMPLEX, right? >> >> Vaclav

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Re: [petsc-dev] PETSC_HAVE_COMPLEX vs PETSC_USE_COMPLEX
by Jed Brown 26 Sep '18

26 Sep '18

PETSC_HAVE_COMPLEX means that PetscComplex is defined. PETSC_USE_COMPLEX means that PetscScalar is complex. Hapla Vaclav <vaclav.hapla(a)erdw.ethz.ch> writes: > Hello > > grep -R PETSC_HAVE_COMPLEX $PETSC_DIR/src > gives quite some occurrences. > It should be PETSC_USE_COMPLEX, right? > > Vaclav

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PETSC_HAVE_COMPLEX vs PETSC_USE_COMPLEX
by Hapla Vaclav 26 Sep '18

26 Sep '18

Hello grep -R PETSC_HAVE_COMPLEX $PETSC_DIR/src gives quite some occurrences. It should be PETSC_USE_COMPLEX, right? Vaclav

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Re: [petsc-dev] Test output broken for test sets
by Scott Kruger 26 Sep '18

26 Sep '18

I'll take a look. Scott On 9/26/18 8:58 AM, Jed Brown wrote: > Scott, do you know how to fix this? > > Jakub Kruzik <jakub.kruzik(a)vsb.cz> writes: > >> Related issues: >> >> https://lists.mcs.anl.gov/pipermail/petsc-dev/2018-August/023448.html >> >> Jakub >> >> >> On 9/24/18 3:26 PM, Matthew Knepley wrote: >>> At least on my machine, this does not work correctly >>> >>> testset: >>> nsize: {{1 2 4}} >>> args: -use_generator -faces {{2,2,2 1,3,5 3,4,7}} >>> args: -interpolate -distribute -interpolate_after_distribute {{0 1}} >>> args: -dm_plex_check_pointsf >>> test: >>> #TODO some combinations generate wrong SF >>> suffix: 6_tet >>> requires: ctetgen >>> args: -cell_simplex 1 -dm_plex_generator ctetgen >>> test: >>> suffix: 6_hex >>> args: -cell_simplex 0 >>> If I give REPLACE=1, it makes a single output file 6_hex.out and >>> 6_tet.out for all the test, with the output of the last test in it. >>> >>> Thanks, >>> >>> Matt >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which >>> their experiments lead. >>> -- Norbert Wiener >>> >>> https://www.cse.buffalo.edu/~knepley/ >>> <http://www.cse.buffalo.edu/~knepley/> -- Tech-X Corporation kruger(a)txcorp.com 5621 Arapahoe Ave, Suite A Phone: (720) 974-1841 Boulder, CO 80303 Fax: (303) 448-7756

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Re: [petsc-dev] Test output broken for test sets
by Jed Brown 26 Sep '18

26 Sep '18

Scott, do you know how to fix this? Jakub Kruzik <jakub.kruzik(a)vsb.cz> writes: > Related issues: > > https://lists.mcs.anl.gov/pipermail/petsc-dev/2018-August/023448.html > > Jakub > > > On 9/24/18 3:26 PM, Matthew Knepley wrote: >> At least on my machine, this does not work correctly >> >> testset: >> nsize: {{1 2 4}} >> args: -use_generator -faces {{2,2,2 1,3,5 3,4,7}} >> args: -interpolate -distribute -interpolate_after_distribute {{0 1}} >> args: -dm_plex_check_pointsf >> test: >> #TODO some combinations generate wrong SF >> suffix: 6_tet >> requires: ctetgen >> args: -cell_simplex 1 -dm_plex_generator ctetgen >> test: >> suffix: 6_hex >> args: -cell_simplex 0 >> If I give REPLACE=1, it makes a single output file 6_hex.out and >> 6_tet.out for all the test, with the output of the last test in it. >> >> Thanks, >> >> Matt >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which >> their experiments lead. >> -- Norbert Wiener >> >> https://www.cse.buffalo.edu/~knepley/ >> <http://www.cse.buffalo.edu/~knepley/>

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Re: [petsc-dev] Test output broken for test sets
by Jakub Kruzik 26 Sep '18

26 Sep '18

Related issues: https://lists.mcs.anl.gov/pipermail/petsc-dev/2018-August/023448.html Jakub On 9/24/18 3:26 PM, Matthew Knepley wrote: > At least on my machine, this does not work correctly > > testset: > nsize: {{1 2 4}} > args: -use_generator -faces {{2,2,2 1,3,5 3,4,7}} > args: -interpolate -distribute -interpolate_after_distribute {{0 1}} > args: -dm_plex_check_pointsf > test: > #TODO some combinations generate wrong SF > suffix: 6_tet > requires: ctetgen > args: -cell_simplex 1 -dm_plex_generator ctetgen > test: > suffix: 6_hex > args: -cell_simplex 0 > If I give REPLACE=1, it makes a single output file 6_hex.out and > 6_tet.out for all the test, with the output of the last test in it. > > Thanks, > > Matt > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener > > https://www.cse.buffalo.edu/~knepley/ > <http://www.cse.buffalo.edu/~knepley/>

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