April 2016 - petsc-dev - mailman3.cels.anl.gov

Re: [petsc-dev] [petsc-users] SAMG support
by Patrick Sanan 27 Apr '16

27 Apr '16

Awesome - I wasn't aware of the shared library option, but that indeed makes things even more attractive. On Wed, Apr 27, 2016 at 1:47 PM, Matthew Knepley <knepley(a)gmail.com> wrote: > On Wed, Apr 27, 2016 at 5:51 AM, Lisandro Dalcin <dalcinl(a)gmail.com> wrote: >> >> On 27 April 2016 at 11:53, Patrick Sanan <patrick.sanan(a)gmail.com> wrote: >> > >> >> > includes), and have them add a single registration line after >> > PetscInitialize which makes the new solver usable just as the built-in >> > ones are (via the options database and command line arguments). >> >> Actually, if you build your plugin as a shared library, then you can just >> >> -dll_append pcsupercool.so >> >> and get it registered, no need to modify code. > > > Note that this is how I organized our class project: > > https://github.com/jag20/CAAM520SRM > > and as you can see from the build system, its really easy. > > Thanks, > > Matt > >> >> >> > >> > I don't know of any packages that actually do this - are there some? >> > >> >> Don't know. But I would argue that many packages currently in PETSc >> could be reworked as plugins very easily. >> >> Oh! Hold on. We have some support for writing "plugins" in Python, and >> we dynamically load the Python shared library to bootstrap the Python >> runtime and then petsc4py. And IMHO, this is quite a bit more >> complicated that plain C plugins. >> >> > >> > Is this a hassle for reasons I haven't thought through fully yet? >> > >> >> The only hassle would be to updating it after new PETSc releases. And >> BTW, you could keep your code compatible with older PETSc releases >> with proper processor guards. >> >> A minor issue with dynamically loadable plugins is that using the >> command line is the only way to configure the package is through the >> command line. But that's a fair price to pay for not having to ever >> modify (nor recompile) your code. >> >> > The specific interest I have in this is that a student of Olaf's has >> > been working with an interface to (non-MKL) PARDISO which I think >> > could be useful, and I'm also interested in there being an interface >> > to ILUPack. >> > >> >> Go for it. I can help with comments and review. >> >> PS: I'm not 100% sure about the status of dynamic lib loading in >> PETSc, but I can help with any required refactoring of that machinery >> to better support plugins. >> >> -- >> Lisandro Dalcin >> ============ >> Research Scientist >> Computer, Electrical and Mathematical Sciences & Engineering (CEMSE) >> Extreme Computing Research Center (ECRC) >> King Abdullah University of Science and Technology (KAUST) >> http://ecrc.kaust.edu.sa/ >> >> 4700 King Abdullah University of Science and Technology >> al-Khawarizmi Bldg (Bldg 1), Office # 0109 >> Thuwal 23955-6900, Kingdom of Saudi Arabia >> http://www.kaust.edu.sa >> >> Office Phone: +966 12 808-0459 > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener

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Re: [petsc-dev] [petsc-users] SAMG support
by Matthew Knepley 27 Apr '16

27 Apr '16

On Wed, Apr 27, 2016 at 5:51 AM, Lisandro Dalcin <dalcinl(a)gmail.com> wrote: > On 27 April 2016 at 11:53, Patrick Sanan <patrick.sanan(a)gmail.com> wrote: > > > > > includes), and have them add a single registration line after > > PetscInitialize which makes the new solver usable just as the built-in > > ones are (via the options database and command line arguments). > > Actually, if you build your plugin as a shared library, then you can just > > -dll_append pcsupercool.so > > and get it registered, no need to modify code. Note that this is how I organized our class project: https://github.com/jag20/CAAM520SRM and as you can see from the build system, its really easy. Thanks, Matt > > > > > I don't know of any packages that actually do this - are there some? > > > > Don't know. But I would argue that many packages currently in PETSc > could be reworked as plugins very easily. > > Oh! Hold on. We have some support for writing "plugins" in Python, and > we dynamically load the Python shared library to bootstrap the Python > runtime and then petsc4py. And IMHO, this is quite a bit more > complicated that plain C plugins. > > > > > Is this a hassle for reasons I haven't thought through fully yet? > > > > The only hassle would be to updating it after new PETSc releases. And > BTW, you could keep your code compatible with older PETSc releases > with proper processor guards. > > A minor issue with dynamically loadable plugins is that using the > command line is the only way to configure the package is through the > command line. But that's a fair price to pay for not having to ever > modify (nor recompile) your code. > > > The specific interest I have in this is that a student of Olaf's has > > been working with an interface to (non-MKL) PARDISO which I think > > could be useful, and I'm also interested in there being an interface > > to ILUPack. > > > > Go for it. I can help with comments and review. > > PS: I'm not 100% sure about the status of dynamic lib loading in > PETSc, but I can help with any required refactoring of that machinery > to better support plugins. > > -- > Lisandro Dalcin > ============ > Research Scientist > Computer, Electrical and Mathematical Sciences & Engineering (CEMSE) > Extreme Computing Research Center (ECRC) > King Abdullah University of Science and Technology (KAUST) > http://ecrc.kaust.edu.sa/ > > 4700 King Abdullah University of Science and Technology > al-Khawarizmi Bldg (Bldg 1), Office # 0109 > Thuwal 23955-6900, Kingdom of Saudi Arabia > http://www.kaust.edu.sa > > Office Phone: +966 12 808-0459 > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener

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Re: [petsc-dev] [petsc-users] SAMG support
by Lisandro Dalcin 27 Apr '16

27 Apr '16

On 27 April 2016 at 11:53, Patrick Sanan <patrick.sanan(a)gmail.com> wrote: > > includes), and have them add a single registration line after > PetscInitialize which makes the new solver usable just as the built-in > ones are (via the options database and command line arguments). Actually, if you build your plugin as a shared library, then you can just -dll_append pcsupercool.so and get it registered, no need to modify code. > > I don't know of any packages that actually do this - are there some? > Don't know. But I would argue that many packages currently in PETSc could be reworked as plugins very easily. Oh! Hold on. We have some support for writing "plugins" in Python, and we dynamically load the Python shared library to bootstrap the Python runtime and then petsc4py. And IMHO, this is quite a bit more complicated that plain C plugins. > > Is this a hassle for reasons I haven't thought through fully yet? > The only hassle would be to updating it after new PETSc releases. And BTW, you could keep your code compatible with older PETSc releases with proper processor guards. A minor issue with dynamically loadable plugins is that using the command line is the only way to configure the package is through the command line. But that's a fair price to pay for not having to ever modify (nor recompile) your code. > The specific interest I have in this is that a student of Olaf's has > been working with an interface to (non-MKL) PARDISO which I think > could be useful, and I'm also interested in there being an interface > to ILUPack. > Go for it. I can help with comments and review. PS: I'm not 100% sure about the status of dynamic lib loading in PETSc, but I can help with any required refactoring of that machinery to better support plugins. -- Lisandro Dalcin ============ Research Scientist Computer, Electrical and Mathematical Sciences & Engineering (CEMSE) Extreme Computing Research Center (ECRC) King Abdullah University of Science and Technology (KAUST) http://ecrc.kaust.edu.sa/ 4700 King Abdullah University of Science and Technology al-Khawarizmi Bldg (Bldg 1), Office # 0109 Thuwal 23955-6900, Kingdom of Saudi Arabia http://www.kaust.edu.sa Office Phone: +966 12 808-0459

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Re: [petsc-dev] [petsc-users] SAMG support
by Patrick Sanan 27 Apr '16

27 Apr '16

I'll take this opportunity to ask a question that I've been idly wondering about. A very powerful feature of PETSc, yet one that somehow doesn't seem to get talked about as much as would have thought, is the plug-in design. People tend to ask "is X in PETSc" all the time, when X is a non-open-source external solver or package. When the answer is "no, there isn't an interface with the library itself" (due to licensing or versioning concerns, lack of maintainer time, fear of code bloat/rot, etc.), a seemingly workable compromise is that the maintainer of a package (or an interested third party) publishes and maintains a plug-in implementation of a PETSc class. For instance, if there's interest in a PCSUPERCOOL but there is no interface in PETSc, then I write the PC implementation, state which version(s) of PETSc and the external library that I support, ask interested users to compile and link it with their code (I can provide a demo makefile which will make this easy by using PETSc's make includes), and have them add a single registration line after PetscInitialize which makes the new solver usable just as the built-in ones are (via the options database and command line arguments). This should be pretty transparent from the point of view of a user building application code - critically, they won't have to rebuild PETSc. They would be responsible for correctly linking to the correct version of the external library. I don't know of any packages that actually do this - are there some? Is this a hassle for reasons I haven't thought through fully yet? The specific interest I have in this is that a student of Olaf's has been working with an interface to (non-MKL) PARDISO which I think could be useful, and I'm also interested in there being an interface to ILUPack. On Wed, Apr 27, 2016 at 6:40 AM, Norihiro Watanabe <norihiro.w(a)gmail.com> wrote: > Thanks! > > On Wed, Apr 27, 2016 at 6:23 AM, Satish Balay <balay(a)mcs.anl.gov> wrote: >> Yes its removed.. >> >> https://bitbucket.org/petsc/petsc/commits/758d9a8da9b91e4064de3b63c5dd04fe7… >> >> Satish >> >> On Tue, 26 Apr 2016, Norihiro Watanabe wrote: >> >>> Hi, >>> >>> Is SAMG, a commercial multigrid solver, not supported in PETSc anymore? It >>> seems an interface to the library was somehow implemented in PETSc v2. but >>> I cannot find it in the latest version. I guess its support was dropped out >>> already but want to make it sure. >>> >>> >>> Best, >>> Nori >>> >> > > > > -- > Norihiro Watanabe

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Re: [petsc-dev] git repo branches housekeeping
by Satish Balay 25 Apr '16

25 Apr '16

On Mon, 25 Apr 2016, Satish Balay wrote: > For more housekeeping - look at the remaining local and remote > branches and figure-out what to do. [perhaps some of them are > intermediate branches during rebase - or abandoned features that > should be deleted]. For my branches - I would do: For reference - current list of remote branches Satish ----------- $ git branch -r |wc -l 196 $ git branch -r origin/HEAD -> origin/master origin/PICell origin/adams/zeroDSOR origin/balay/atpesc-tutorial-2014-bgq origin/balay/atpesc-tutorial-2015-bgq origin/balay/fix-cxx-cmplx-single origin/balay/fix-uninstall origin/balay/giturl-fixes origin/balay/to-maint-switch-hdf5-build-to-cmake origin/balay/update-cmake-3.3 origin/balay/update-hdf5-netcdf origin/barry/check-no-autodetect-first origin/barry/cleanup-checkclibraries origin/barry/feature-enhanced-binary-viewers origin/barry/fix-petscviewer-attempt-1 origin/barry/fix-some-clang-warnings origin/barry/fix-threadsafety-mpi-key-value-create origin/barry/html origin/barry/more-tchem-work origin/barry/new-test-makefiles origin/barry/newhtml origin/barry/saws-profile origin/barry/superlu_mt origin/barry/utilize-hwloc origin/bueler/clean-ex9 origin/dalcinl/fix-xaij-spd origin/dalcinl/malloc-coalesced origin/dalcinl/ts-exactfinaltime origin/debo/mat-taij origin/debo/ts-fix-ex31 origin/debo/ts-irk origin/dmay/ksp-cvgtest-normtype-fix origin/emil/fix-ts-dae-rebased-v2 origin/emil/ts-glee origin/hongzh/ts-direct-sa origin/hongzh/ts-matshell-example origin/hzhang/dmnetwork-spJacobian3 origin/hzhang/fix-ptaptest origin/hzhang/ksp-fminres origin/hzhang/ksp-minresqlp origin/hzhang/superlu_dist-4.3-erroriffpe origin/irving/fe-scalars origin/irving/snes-ex12-cleanup origin/jed/assembly-perf origin/jed/cray-externc origin/jed/defined-nocpp origin/jed/elbueler-snes-ex5-fixes origin/jed/feature-dmda-section origin/jed/feature-sf-local origin/jed/fix-mat-convert-basic-bs origin/jed/fix-matnorm-log-flops origin/jed/ksp-plugin origin/jed/mat-eigenvalue-cache origin/jed/mat-taij origin/jed/mpi-2 origin/jed/next-seaice origin/jed/sr-driver origin/jed/sr-driver4 origin/jed/tao-status-string origin/jed/tap origin/jed/ts-ex11-union origin/jed/ts-heat-plex origin/jed/vecghostgetvalues origin/john-saws-webosocket-update origin/john/saws-webui-upgrade origin/jose/lapack-check origin/karlrupp/feature-optimize-opencl-petscfe origin/karlrupp/feature-pipelined-cg-viennacl origin/karlrupp/feature-viennacl-cuda origin/karlrupp/feature-viennacl-openmp origin/karlrupp/fix-viennacl-veccopy origin/karpeev/fix-pc-fieldsplit-reset origin/karpeev/mat-convert-nest-aij-test origin/karpeev/mat-reset origin/klaij/fieldsplit-simple-ex70 origin/knepley/feature-configure-kcomputer origin/knepley/feature-da-repartition origin/knepley/feature-fe-nonaffine origin/knepley/feature-optcontrol-mg origin/knepley/feature-parallel-mesh-load origin/knepley/feature-plex-example-nonconforming origin/knepley/feature-plex-nasm origin/knepley/feature-spectral-solutions origin/knepley/feature-ts-mass-matrix origin/knepley/fix-cohesive-orientation origin/knepley/fix-quadrature-order origin/knepley/pylith origin/knepley/swarm origin/madams/ex56params origin/madams/sor-residual origin/madams/sr-driver origin/madams/sr-driver2 origin/madams/sr-driver4 origin/madams/sr1 origin/maint origin/maint-3.2 origin/maint-3.3 origin/maint-3.4 origin/maint-3.5 origin/maint-3.6 origin/maint-tao-2.2 origin/mark/dmshell-ltogmap origin/mark/dmshell-test origin/mark/feature-picell origin/mark/feature-picell-iter origin/mark/gamg-coarse_ksp origin/mark/gamg-squarefix origin/mark/gamg-zerod origin/mark/ksp-zero-its origin/mark/schur-D origin/mark/tsex11 origin/master origin/master-tao origin/mlange/feature-plex-case origin/mlange/feature-plex-create-parallel origin/mlange/feature-plex-med origin/mlange/feature-plex-triangle origin/mlange/fix-adjacency-performance origin/mlange/fix-plex-cas-tests origin/mlange/fix-plex-hex-mesh origin/mlange/plex-create-parallel origin/mlange/plex-distributed-overlap origin/mlange/plex-hybrid-hdf5 origin/mlange/plex-redistribute origin/mlange/plex-sfc-reordering origin/mlange/plex-vertex-partitioning origin/mlange05/fix-gmsh-coordinates origin/next origin/next-apr-2016 origin/next-jun-2015 origin/next-oct-2014 origin/paulmullowney/aijcusp-ellpack-fix origin/peller/threadcomm origin/pr118/asmunder/DMDA-fortran-example/master origin/prbrune/matcoloring-creategraph origin/prbrune/matcoloring-minpack origin/prbrune/matcoloring-misimprovement origin/prbrune/matcoloring-zoltan origin/prbrune/pcgamg-bootstrap origin/prbrune/pcgamg-classicalbootstrap origin/prbrune/pcgamg-cr origin/prbrune/sf-examplefix origin/prbrune/snes-ex19vtkoutput origin/prbrune/snes-fasadditive origin/prbrune/zoltanupdate origin/psanan/ksp-tutorial-ex60-fixes origin/psanan/ts-bz-examples origin/psanan/ts-multiscale origin/psanan/ts-rhs-partitions origin/psanan/ts-tests origin/psanan/vec-mtdot-fix origin/sarich/configure-mira origin/sarich/feature-configure-chombo origin/sarich/feature-submatrixfree origin/sarich/feature-tao-pounders-jacobian origin/sarich/feature-tao-pounders-off-diagonal-terms origin/sarich/fix-tao-example-add-finalize origin/sarich/fix-tao-example-warning origin/sarich/mira origin/sarich/rnet-all origin/sarich/rnet-fix-rebase origin/sarich/rnet-import origin/sarich/snesvi-subvec-options origin/sarich/tao-docs-update origin/sarich/tao-lnks origin/sarich/tao-pounders-add-corr-test origin/sarich/tao-separate-state-design origin/sarich/vi/snes-aug-example origin/sarich/xsdk-add-test-arch origin/shri/FTRTDS-project origin/shri/ts-dae-semi-explicit origin/shri/ts-powergrid origin/stefano_zampini/dmplex-matis-support origin/stefano_zampini/feature-pcbddc-saddlepoint origin/stefano_zampini/fix-coherent-computation-constraints origin/stefano_zampini/hypre-ams-zerointerior-feature origin/stefano_zampini/new-elemental-interface origin/stefano_zampini/pcbddc-multilevel-extensions origin/tisaac/buildsystem-feature-parallel origin/tisaac/buildsystem-feature-subst-link-flags origin/tisaac/config-fix-petsc-py origin/tisaac/dmp4est-feature-mapped-coordinates origin/tisaac/dual-space-get-traces origin/tisaac/feature-gamg-compose-graph origin/tisaac/feature-plex-example-nonconforming origin/tisaac/feature-seqaij-get-submat-row-unordered origin/tisaac/feature-seqaij-submat-col-unsorted origin/tisaac/fix-ex3-coords origin/tisaac/fix-gamg-set-coordinates origin/tisaac/gamg-more-info origin/tisaac/knepley/feature-composable-callbacks origin/tisaac/ksp-fix-cheby-pc-handling origin/tisaac/pc-pbjacobi-vec-get-array-read origin/tisaac/petsc-next-upstream origin/tisaac/warn-next-upstream origin/vi/snes-newtonaugas

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Re: [petsc-dev] git repo branches housekeeping
by Satish Balay 25 Apr '16

25 Apr '16

http://stackoverflow.com/questions/12495756/why-doesnt-git-allow-me-to-safe… Ah - I think you've done the following (or equivalent)- so git is complaining. git checkout barry/download-mstk <edit/test> git commit [did not do 'git push'] git checkout master git merge barry/download-mstk Since these branches are already merged to 3.7 - and also deleted on remote/server - you can 'force delete' the local ones. git branch -D barry/download-mstk shri/add-tsevent-to-powergrid-examples [also 'git fetch -p'] Satish On Mon, 25 Apr 2016, Barry Smith wrote: > > $ git log v3.7..shri/add-tsevent-to-powergrid-example > fatal: ambiguous argument 'v3.7..shri/add-tsevent-to-powergrid-example': unknown revision or path not in the working tree. > Use '--' to separate paths from revisions, like this: > 'git <command> [<revision>...] -- [<file>...]' > ~/Src/petsc (next=) > $ git log v3.7..barry/download-mstk > ~/Src/petsc (next=) > > > > > On Apr 25, 2016, at 1:12 PM, Satish Balay <balay(a)mcs.anl.gov> wrote: > > > > What do you have for > > > > git fetch > > git log v3.7..barry/download-mstk > > got lpg v3.7..shri/add-tsevent-to-powergrid-examples > > > > Satish > > > > On Mon, 25 Apr 2016, Barry Smith wrote: > > > >> > >> warning: not deleting branch 'barry/download-mstk' that is not yet merged to > >> 'refs/remotes/origin/barry/download-mstk', even though it is merged to HEAD. > >> error: The branch 'barry/download-mstk' is not fully merged. > >> If you are sure you want to delete it, run 'git branch -D barry/download-mstk'. > >> > >> > >> warning: not deleting branch 'shri/add-tsevent-to-powergrid-examples' that is not yet merged to > >> 'refs/remotes/origin/shri/add-tsevent-to-powergrid-examples', even though it is merged to HEAD. > >> error: The branch 'shri/add-tsevent-to-powergrid-examples' is not fully merged. > >> If you are sure you want to delete it, run 'git branch -D shri/add-tsevent-to-powergrid-examples'. > >> > >> > >>> On Apr 25, 2016, at 12:01 PM, Satish Balay <balay(a)mcs.anl.gov> wrote: > >>> > >>> ref: http://lists.mcs.anl.gov/pipermail/petsc-dev/2015-June/017808.html > >>> > >>> I've deleted all deveopment branches that are already merged into > >>> maint (v3.7) from https://bitbucket.org/petsc/petsc > >>> > >>> However if you wish to remove these branches from your clone - it has > >>> to be done manually (in each clone). > >>> > >>> To get this list of branches to delete - you can do: > >>> > >>> git branch --merged v3.7 |egrep -v " (maint|master|next)" > branches_to_delete > >>> > >>> After *verifying* the list is correct - and ok to delete - they can be deleted with: > >>> > >>> git branch -d `cat branches_to_delete` > >>> > >>> And to sync the [deleted] remove branch list info - you can do: > >>> > >>> git fetch -p > >>> > >>> For more housekeeping - look at the remaining local and remote > >>> branches and figure-out what to do. [perhaps some of them are > >>> intermediate branches during rebase - or abandoned features that > >>> should be deleted]. For my branches - I would do: > >>> > >>> git branch > >>> git branch -r |grep balay > >>> > >>> Satish > >>> ---------------- > >>> reference for self: > >>> $ git branch -r --merged v3.7 |egrep -v origin/$maint\|master\|next$ |sed -e s%origin/%:% > remote_branches_to_delete > >>> $ git push -u origin `cat remote_branches_to_delete` > >>> To [email protected]:petsc/petsc.git > >>> - [deleted] Fande-Kong/moved-partitioning-to-pcgasmsetup > >>> - [deleted] balay-to-maint-fix-vs2015-vsnprintf > >>> - [deleted] balay/add-KSPComputeRitz-patch > >>> - [deleted] balay/add-clang-sa-build > >>> - [deleted] balay/add-fortran-DMRemoveLabel > >>> - [deleted] balay/configure-pkg-git-autoupdate > >>> - [deleted] balay/el-parmetis-check > >>> - [deleted] balay/el_AxpyInterface_removal > >>> - [deleted] balay/fix-externalpackage-build-shared > >>> - [deleted] balay/fix-fortran-unused_variables > >>> - [deleted] balay/fix-sowing-valgrind > >>> - [deleted] balay/fix-streams-npmax > >>> - [deleted] balay/fix-win-isnan > >>> - [deleted] balay/ftn-command_argument > >>> - [deleted] balay/git-externalpackage-update > >>> - [deleted] balay/improve-odpes > >>> - [deleted] balay/rm-tree > >>> - [deleted] balay/superlu_dist-4.3 > >>> - [deleted] balay/superlu_dist-4.3-p1 > >>> - [deleted] balay/to-maint-add-mpiuni_mpi_in_place > >>> - [deleted] balay/to-maint-add-urlretrieve-timeout > >>> - [deleted] balay/to-maint-fix-fortran-fflag-order > >>> - [deleted] balay/to-maint-fix-gfortran51-warnings > >>> - [deleted] balay/to-maint-fix-win64-long > >>> - [deleted] balay/to-maint-metis-parmetis-nocxx > >>> - [deleted] balay/to-maint-migrate-builds > >>> - [deleted] balay/to-maint/update-superlu_dist-4.1 > >>> - [deleted] balay/update-elemental-0.86-pre > >>> - [deleted] balay/update-gmake-check > >>> - [deleted] balay/update-gnumake-41 > >>> - [deleted] balay/update-metis-xcode-fix-to-maint > >>> - [deleted] balay/update-mpich-3.2 > >>> - [deleted] balay/update-sowing-svn > >>> - [deleted] balay/update-superlu_dist_mar-16-294e2d0 > >>> - [deleted] barry-allow-vecset-nan-3.6 > >>> - [deleted] barry/Sylvain-gmres-symmetric > >>> - [deleted] barry/add-concurrencykit > >>> - [deleted] barry/add-dmdavecgetarrayreadf90/maint > >>> - [deleted] barry/add-dmshellcreaterestriction > >>> - [deleted] barry/add-mpiu_allreduce > >>> - [deleted] barry/add-pcfieldsplit-logevent > >>> - [deleted] barry/add-pcreset-hypre > >>> - [deleted] barry/add-pcreset-hypre-for-master > >>> - [deleted] barry/all-petscoptionssetvalue-beforepetscinitialize > >>> - [deleted] barry/always-mark-floats > >>> - [deleted] barry/better-matsetoption-error > >>> - [deleted] barry/check-for-PetscInt-overflow > >>> - [deleted] barry/check-nullspace-properties > >>> - [deleted] barry/cleanup-pcsetupcalled > >>> - [deleted] barry/cleanup-petscsys > >>> - [deleted] barry/download-mstk > >>> - [deleted] barry/download-pflowtran > >>> - [deleted] barry/downloads > >>> - [deleted] barry/error-on-extern-c-of-petscincludes > >>> - [deleted] barry/feature-force-setting-exactfinaltime > >>> - 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Re: [petsc-dev] git repo branches housekeeping
by Jed Brown 25 Apr '16

25 Apr '16

Barry Smith <bsmith(a)mcs.anl.gov> writes: > $ git log v3.7..shri/add-tsevent-to-powergrid-example > fatal: ambiguous argument 'v3.7..shri/add-tsevent-to-powergrid-example': unknown revision or path not in the working tree. You misspelled the branch name (it's plural). >> got lpg v3.7..shri/add-tsevent-to-powergrid-examples

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Re: [petsc-dev] git repo branches housekeeping
by Barry Smith 25 Apr '16

25 Apr '16

$ git log v3.7..shri/add-tsevent-to-powergrid-example fatal: ambiguous argument 'v3.7..shri/add-tsevent-to-powergrid-example': unknown revision or path not in the working tree. Use '--' to separate paths from revisions, like this: 'git <command> [<revision>...] -- [<file>...]' ~/Src/petsc (next=) $ git log v3.7..barry/download-mstk ~/Src/petsc (next=) > On Apr 25, 2016, at 1:12 PM, Satish Balay <balay(a)mcs.anl.gov> wrote: > > What do you have for > > git fetch > git log v3.7..barry/download-mstk > got lpg v3.7..shri/add-tsevent-to-powergrid-examples > > Satish > > On Mon, 25 Apr 2016, Barry Smith wrote: > >> >> warning: not deleting branch 'barry/download-mstk' that is not yet merged to >> 'refs/remotes/origin/barry/download-mstk', even though it is merged to HEAD. >> error: The branch 'barry/download-mstk' is not fully merged. >> If you are sure you want to delete it, run 'git branch -D barry/download-mstk'. >> >> >> warning: not deleting branch 'shri/add-tsevent-to-powergrid-examples' that is not yet merged to >> 'refs/remotes/origin/shri/add-tsevent-to-powergrid-examples', even though it is merged to HEAD. >> error: The branch 'shri/add-tsevent-to-powergrid-examples' is not fully merged. >> If you are sure you want to delete it, run 'git branch -D shri/add-tsevent-to-powergrid-examples'. >> >> >>> On Apr 25, 2016, at 12:01 PM, Satish Balay <balay(a)mcs.anl.gov> wrote: >>> >>> ref: http://lists.mcs.anl.gov/pipermail/petsc-dev/2015-June/017808.html >>> >>> I've deleted all deveopment branches that are already merged into >>> maint (v3.7) from https://bitbucket.org/petsc/petsc >>> >>> However if you wish to remove these branches from your clone - it has >>> to be done manually (in each clone). >>> >>> To get this list of branches to delete - you can do: >>> >>> git branch --merged v3.7 |egrep -v " (maint|master|next)" > branches_to_delete >>> >>> After *verifying* the list is correct - and ok to delete - they can be deleted with: >>> >>> git branch -d `cat branches_to_delete` >>> >>> And to sync the [deleted] remove branch list info - you can do: >>> >>> git fetch -p >>> >>> For more housekeeping - look at the remaining local and remote >>> branches and figure-out what to do. [perhaps some of them are >>> intermediate branches during rebase - or abandoned features that >>> should be deleted]. For my branches - I would do: >>> >>> git branch >>> git branch -r |grep balay >>> >>> Satish >>> ---------------- >>> reference for self: >>> $ git branch -r --merged v3.7 |egrep -v origin/$maint\|master\|next$ |sed -e s%origin/%:% > remote_branches_to_delete >>> $ git push -u origin `cat remote_branches_to_delete` >>> To [email protected]:petsc/petsc.git >>> - [deleted] Fande-Kong/moved-partitioning-to-pcgasmsetup >>> - [deleted] balay-to-maint-fix-vs2015-vsnprintf >>> - [deleted] balay/add-KSPComputeRitz-patch >>> - [deleted] balay/add-clang-sa-build >>> - [deleted] balay/add-fortran-DMRemoveLabel >>> - [deleted] balay/configure-pkg-git-autoupdate >>> - [deleted] balay/el-parmetis-check >>> - [deleted] balay/el_AxpyInterface_removal >>> - [deleted] balay/fix-externalpackage-build-shared >>> - [deleted] balay/fix-fortran-unused_variables >>> - [deleted] balay/fix-sowing-valgrind >>> - [deleted] balay/fix-streams-npmax >>> - [deleted] balay/fix-win-isnan >>> - [deleted] balay/ftn-command_argument >>> - 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Re: [petsc-dev] git repo branches housekeeping
by Satish Balay 25 Apr '16

25 Apr '16

On Mon, 25 Apr 2016, Jed Brown wrote: > Matthew Knepley <knepley(a)gmail.com> writes: > > > I just get > > > > maint $:/PETSc3/petsc/petsc-dev$ git branch --merged v3.7 > > git branch --merged v3.7 > > knepley/feature-configuration-callbacks > > > > which is the one branch I have leftover here. Is that what I am supposed to > > get? Only one branch? Perhaps you were doing housekeeping regularly [deleting local feature branches after they were merged to master] Also this one appears to be an intermediate branch that was never pushed to remote - but was perhaps merged to a different feature branch - and then to master] > Yes. I had a few others because I hadn't cleaned up recently. If you > had been testing every PR, you would have had something like the full > list that Satish mentioned. The full list was the list of branches I deleted on the server. Locally I have only a fraction of the branches [all of my branches (some local/temporary), and a few of other developer branches to which I might have pushed fixes for]. Here is the small list of local branches that I deleted from my clone. $ cat branches_to_delete balay/add-KSPComputeRitz-patch balay/add-clang-sa-build balay/add-fortran-DMRemoveLabel balay/configure-pkg-git-autoupdate balay/el-parmetis-check balay/el_AxpyInterface_removal balay/fix-externalpackage-build-shared balay/fix-fortran-unused_variables balay/fix-streams-npmax balay/git-externalpackage-update balay/improve-odpes balay/superlu_dist-4.3 balay/superlu_dist-4.3-p1 balay/to-maint-add-mpiuni_mpi_in_place balay/to-maint-metis-parmetis-nocxx balay/update-elemental-0.86-pre balay/update-gmake-check balay/update-metis-xcode-fix-to-maint balay/update-mpich-3.2 balay/update-superlu_dist_mar-16-294e2d0 barry/download-pflowtran barry/downloads barry/fix-dmnetworkcomponentalignment barry/monitor-fromoptions barry/update-hypre barry/update-superlu_dist hzhang/matpackage-erroriffpe hzhang/matpackage-type hzhang/superlu-5.1 hzhang/update-networkex knepley/fix-configure-saving release-3.7 sarich/fix-xsdk-packages shri/update-tsevent test tisaac/dmforest tisaac/dmp4est-feature-injection Satish

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Re: [petsc-dev] git repo branches housekeeping
by Satish Balay 25 Apr '16

25 Apr '16

What do you have for git fetch git log v3.7..barry/download-mstk got lpg v3.7..shri/add-tsevent-to-powergrid-examples Satish On Mon, 25 Apr 2016, Barry Smith wrote: > > warning: not deleting branch 'barry/download-mstk' that is not yet merged to > 'refs/remotes/origin/barry/download-mstk', even though it is merged to HEAD. > error: The branch 'barry/download-mstk' is not fully merged. > If you are sure you want to delete it, run 'git branch -D barry/download-mstk'. > > > warning: not deleting branch 'shri/add-tsevent-to-powergrid-examples' that is not yet merged to > 'refs/remotes/origin/shri/add-tsevent-to-powergrid-examples', even though it is merged to HEAD. > error: The branch 'shri/add-tsevent-to-powergrid-examples' is not fully merged. > If you are sure you want to delete it, run 'git branch -D shri/add-tsevent-to-powergrid-examples'. > > > > On Apr 25, 2016, at 12:01 PM, Satish Balay <balay(a)mcs.anl.gov> wrote: > > > > ref: http://lists.mcs.anl.gov/pipermail/petsc-dev/2015-June/017808.html > > > > I've deleted all deveopment branches that are already merged into > > maint (v3.7) from https://bitbucket.org/petsc/petsc > > > > However if you wish to remove these branches from your clone - it has > > to be done manually (in each clone). > > > > To get this list of branches to delete - you can do: > > > > git branch --merged v3.7 |egrep -v " (maint|master|next)" > branches_to_delete > > > > After *verifying* the list is correct - and ok to delete - they can be deleted with: > > > > git branch -d `cat branches_to_delete` > > > > And to sync the [deleted] remove branch list info - you can do: > > > > git fetch -p > > > > For more housekeeping - look at the remaining local and remote > > branches and figure-out what to do. [perhaps some of them are > > intermediate branches during rebase - or abandoned features that > > should be deleted]. For my branches - I would do: > > > > git branch > > git branch -r |grep balay > > > > Satish > > ---------------- > > reference for self: > > $ git branch -r --merged v3.7 |egrep -v origin/$maint\|master\|next$ |sed -e s%origin/%:% > remote_branches_to_delete > > $ git push -u origin `cat remote_branches_to_delete` > > To [email protected]:petsc/petsc.git > > - [deleted] Fande-Kong/moved-partitioning-to-pcgasmsetup > > - [deleted] balay-to-maint-fix-vs2015-vsnprintf > > - [deleted] balay/add-KSPComputeRitz-patch > > - [deleted] balay/add-clang-sa-build > > - [deleted] balay/add-fortran-DMRemoveLabel > > - [deleted] balay/configure-pkg-git-autoupdate > > - [deleted] balay/el-parmetis-check > > - [deleted] balay/el_AxpyInterface_removal > > - [deleted] balay/fix-externalpackage-build-shared > > - [deleted] balay/fix-fortran-unused_variables > > - [deleted] balay/fix-sowing-valgrind > > - [deleted] balay/fix-streams-npmax > > - [deleted] balay/fix-win-isnan > > - [deleted] balay/ftn-command_argument > > - 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