October 2013 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] coupling
by Huiwei Lu 27 Oct '13

27 Oct '13

It seems to me that MPI is running OK, as both cpi and hellow returns correct results. There may be some application errors in your program. What is a ‘coupled’ model? Can you explain it? Huiwei Lu http://www.mcs.anl.gov/~huiweilu/ On Oct 27, 2013, at 4:45 AM, fereshteh komijani <fereshtehkomijani(a)gmail.com> wrote: > also > [fkomijani@localhost examples_graphics]$ cd /home/fkomijani/mpich2-1.4.1p1/examples > $ make hellow > CC hellow.c > ../bin/mpicc -o hellow hellow.o > > [fkomijani@localhost examples] $ mpirun -n 2 ./hellow > Hello world from process 0 of 2 > Hello world from process 1 of 2 > > it is necessary to say that i was able to run uncoupled test successfully. i face with above error for coupled model. > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] coupling
by fereshteh komijani 27 Oct '13

27 Oct '13

also [fkomijani@localhost examples_graphics]$ cd /home/fkomijani/mpich2-1.4.1p1/examples $ make hellow CC hellow.c ../bin/mpicc -o hellow hellow.o [fkomijani@localhost examples] $ mpirun -n 2 ./hellow Hello world from process 0 of 2 Hello world from process 1 of 2 it is necessary to say that i was able to run uncoupled test successfully. i face with above error for coupled model.

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Re: [mpich-discuss] coupling
by fereshteh komijani 27 Oct '13

27 Oct '13

dear thank for your fast reply. in mpich2 installed folder (mpich2-install_new), there is not example sub directory, but in original folder which i download (mpich2-1.4.1p1) there is such folder *Code:* [fkomijani@localhost examples_graphics]$ cd /home/fkomijani/mpich2-1.4.1p1/examples [fkomijani@localhost examples]$ mpirun -n 2 ./cpi Process 0 of 2 is on localhost.localdomain Process 1 of 2 is on localhost.localdomain pi is approximately 3.1415926544231318, Error is 0.0000000008333387 wall clock time = 0.000232code: i attach mpi2.log file cheers fereshte On Sun, Oct 27, 2013 at 12:19 PM, Huiwei Lu <huiweilu(a)mcs.anl.gov> wrote: > It seems to me the application has went wrong and called MPI_Abort to exit. > Have you tried to run some other MPI programs to see whether MPI workg? > e.g. cpi.c under mpi_src_path/examples/ > > mpirun -n p 2 ./cpi > > Also, could you please also send us the mpi.log you generated to help > diagnose the error. > > And, if there is no specific reason. You are more than welcomed to use the > latest release of MPICH, —currently MPICH 3.0.4 at http://www.mpich.org/, > as it has more new features and gets better supported. > > -- > Huiwei Lu > http://www.mcs.anl.gov/~huiweilu/ > > On Oct 27, 2013, at 3:39 AM, fereshteh komijani < > fereshtehkomijani(a)gmail.com> wrote: > > > dear > > i am a newbie of this forum. i am coupling ROMS and SWAN model which > need MCT and MPICH libraries. therefore MCT has been installed by > > Code: > > ./configure CC=gcc FC=gfortran CPPFLAGS=-I/home/usr/mct/include > LDFLAGS=-L/home/usr/mctcal/lib --prefix=/home/usr/mct > > make install > > and mpich2 release 1.4.1p1 by > > Code: > > /configure FC=gfortran CC=gcc --prefix=/home/<user>/mpich2_install_new > 2>&1 |tee c.txt > > make 2>&1 |tee m.txt > > make install 2>&1 |tee mi.txt > > but for running coupled model, when i set 1 cpu for SWAN model and 1 for > ROMS model (therefore 1 node for each of them) by typing > > code: > > mpirun -np 2 ./oceanG coupling_inlet-test.in>mpi.log > > it replies: > > application called MPI_Abort(comm=0x84000002, 4) - process 0 > > would you please tell me how i can solved this problem. > > cheers > > fereshte > > **Angel** > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > -- ***Angel*** **

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Re: [mpich-discuss] coupling
by Huiwei Lu 27 Oct '13

27 Oct '13

It seems to me the application has went wrong and called MPI_Abort to exit. Have you tried to run some other MPI programs to see whether MPI workg? e.g. cpi.c under mpi_src_path/examples/ mpirun -n p 2 ./cpi Also, could you please also send us the mpi.log you generated to help diagnose the error. And, if there is no specific reason. You are more than welcomed to use the latest release of MPICH, —currently MPICH 3.0.4 at http://www.mpich.org/, as it has more new features and gets better supported. -- Huiwei Lu http://www.mcs.anl.gov/~huiweilu/ On Oct 27, 2013, at 3:39 AM, fereshteh komijani <fereshtehkomijani(a)gmail.com> wrote: > dear > i am a newbie of this forum. i am coupling ROMS and SWAN model which need MCT and MPICH libraries. therefore MCT has been installed by > Code: > ./configure CC=gcc FC=gfortran CPPFLAGS=-I/home/usr/mct/include LDFLAGS=-L/home/usr/mctcal/lib --prefix=/home/usr/mct > make install > and mpich2 release 1.4.1p1 by > Code: > /configure FC=gfortran CC=gcc --prefix=/home/<user>/mpich2_install_new 2>&1 |tee c.txt > make 2>&1 |tee m.txt > make install 2>&1 |tee mi.txt > but for running coupled model, when i set 1 cpu for SWAN model and 1 for ROMS model (therefore 1 node for each of them) by typing > code: > mpirun -np 2 ./oceanG coupling_inlet-test.in>mpi.log > it replies: > application called MPI_Abort(comm=0x84000002, 4) - process 0 > would you please tell me how i can solved this problem. > cheers > fereshte > **Angel** > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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coupling
by fereshteh komijani 27 Oct '13

27 Oct '13

dear i am a newbie of this forum. i am coupling ROMS and SWAN model which need MCT and MPICH libraries. therefore MCT has been installed by *Code:* ./configure CC=gcc FC=gfortran CPPFLAGS=-I/home/usr/mct/include LDFLAGS=-L/home/usr/mctcal/lib --prefix=/home/usr/mct make install and mpich2 release 1.4.1p1 by *Code:* /configure FC=gfortran CC=gcc --prefix=/home/<user>/mpich2_install_new 2>&1 |tee c.txt make 2>&1 |tee m.txt make install 2>&1 |tee mi.txt but for running coupled model, when i set 1 cpu for SWAN model and 1 for ROMS model (therefore 1 node for each of them) by typing *code:* mpirun -np 2 ./oceanG coupling_inlet-test.in>mpi.log it replies: application called MPI_Abort(comm=0x84000002, 4) - process 0 would you please tell me how i can solved this problem. cheers fereshte ***Angel*** **

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MPICH2 on heterogeneous platforms
by heshsham basit 27 Oct '13

27 Oct '13

Hi,. Wondering if it Is possible to use MPICH2 on heterogeneous platforms such as one where OS and Processor make are different on different machines? Though I know MPICH2 is not supported now on windows, but can i use machines having different flavors/versions of the linux? If not then what is the alternative?

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Re: [mpich-discuss] MPICH2 on LAN with Ubuntu 12.04
by heshsham basit 27 Oct '13

27 Oct '13

Thanks a lot guys, all my issues are solved: root@ubuntu:/home# mpiexec -f hosts.cfg -n 4 ./hello Hello world from process 1 running on PC1 of 4 Hello world from process 3 running on PC1 of 4 Hello world from process 2 running on PC2 of 4 Hello world from process 0 running on PC2 of 4 :) On 24 October 2013 09:43, heshsham basit <hf.basit1(a)gmail.com> wrote: > I get this on both the machines: > > > root@ubuntu:/home/# getent hosts ubuntu > 192.168.1.4 ubuntu > root@ubuntu:/home/# getent hosts hesh > 192.168.1.5 hesh > root@ubuntu:/home/# > which is expected- am I right? > > (one of my IP address changed as I connected to a different WLAN) > > > On 24 October 2013 09:02, Reuti <reuti(a)staff.uni-marburg.de> wrote: > >> Hi, >> >> Am 24.10.2013 um 12:05 schrieb heshsham basit: >> >> > Thanks a lot for your replies. >> > I followed the instructions given here >> > wiki.mpich.org/mpich/index.php/Using_the_Hydra_Process_Manager1 >> > >> > for running MPI program on multiple machines: >> > >> > My master node is : 192.168.1.4 >> > My client is: 192.168.1.6 >> >> You defined them both on both machines in /etc/hosts? What should give a >> valid reply is: >> >> $ getent hosts ubuntu >> 192.168.1.4 ubuntu >> $ getent hosts hesh >> 192.168.1.6 hesh >> >> resp. the on the other machine. >> >> -- Reuti >> >> >> > I gave the following command from 192.168.1.4 >> > >> > root@ubuntu:/home# mpiexec -f hosts.cfg -n 4 hello >> > root(a)192.168.1.6's password: >> > [proxy:0:0@hesh] HYDU_sock_connect (./utils/sock/sock.c:171): unable >> to get host address for ubuntu (1) >> > [proxy:0:0@hesh] main (./pm/pmiserv/pmip.c:209): unable to connect to >> server ubuntu at port 42104 (check for firewalls!) >> > >> > Why I am getting there errors? >> > >> > Both the machines have locally generated executable hello. Do I must >> have same executable copied in both machines? >> > >> > On master node 192.168.1.4 >> > root@ubuntu:/home# ls >> > acme hello hosts.cfg mpi_hello.c >> > >> > On client 192.168.1.6 >> > >> > root@hesh:/home#ls >> > hesh hello >> > >> > hello in each machine sis generated after compilation locally. >> > >> > >> > >> > On 22 October 2013 12:51, Jeff Hammond <jeff.science(a)gmail.com> wrote: >> > See >> http://wiki.mpich.org/mpich/index.php/Using_the_Hydra_Process_Manager >> > for how to launch MPI across multiple machines. You do not need to >> > use any special hardware adapter; any Ethernet card should provide >> > sufficient TCP/IP support. >> > >> > Jeff >> > >> > On Tue, Oct 22, 2013 at 9:23 AM, Pavan Balaji <balaji(a)mcs.anl.gov> >> wrote: >> > > Hello, >> > > >> > > You'll need to either install mpich on a shared file system (such as >> NFS) or individually on each of the nodes. The README file in the mpich >> tarball should have most of this information. >> > > >> > > -- Pavan >> > > >> > > On Oct 22, 2013, at 8:26 AM, heshsham basit wrote: >> > > >> > >> Hi, >> > >> >> > >> I did some experimentation with MPICH on windows, and recently came >> to know that there is no support for Windows now. >> > >> I am now shifting to Ubuntu. I was successful in installing MPICH2 >> and running my first MPI program on a single machine. >> > >> >> > >> Now I want to run my code on multiple PCs. How do I install MPI in a >> LAN ? What are the additional requirement if any? Do I need any specific >> hardware -network adapter My card details are as under: >> > >> >> > >> root@ubuntu:/home# lspci -nnk | grep -i net -A2 >> > >> 01:07.0 Ethernet controller [0200]: Realtek Semiconductor Co., Ltd. >> RTL-8139/8139C/8139C+ [10ec:8139] (rev 10) >> > >> Subsystem: Hewlett-Packard Company Device [103c:301d] >> > >> Kernel driver in use: 8139too >> > >> >> > >> >> > >> Most of my machines are having this type of card and are connected >> in LAN. >> > >> Really appreciate for any pointers to appropriate document or >> suggestions. >> > >> >> > >> >> > >> Thanks and regards, >> > >> >> > >> >> > >> >> > >> >> > >> _______________________________________________ >> > >> discuss mailing list discuss(a)mpich.org >> > >> To manage subscription options or unsubscribe: >> > >> https://lists.mpich.org/mailman/listinfo/discuss >> > > >> > > -- >> > > Pavan Balaji >> > > http://www.mcs.anl.gov/~balaji >> > > >> > > _______________________________________________ >> > > discuss mailing list discuss(a)mpich.org >> > > To manage subscription options or unsubscribe: >> > > https://lists.mpich.org/mailman/listinfo/discuss >> > >> > >> > >> > -- >> > Jeff Hammond >> > jeff.science(a)gmail.com >> > _______________________________________________ >> > discuss mailing list discuss(a)mpich.org >> > To manage subscription options or unsubscribe: >> > https://lists.mpich.org/mailman/listinfo/discuss >> > >> > _______________________________________________ >> > discuss mailing list discuss(a)mpich.org >> > To manage subscription options or unsubscribe: >> > https://lists.mpich.org/mailman/listinfo/discuss >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> > >

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Re: [mpich-discuss] mpich2 installation fails
by Ken Raffenetti 24 Oct '13

24 Oct '13

This is a somewhat old version of mpich you are trying to build. If you do not need any of the new features of the latest mpich-3.0.4, I would recommend just doing 'sudo apt-get install mpich2' on all your machines. ----- Original Message ----- > From: "bhimashankar dhappadhule" <dhappabn(a)gmail.com> > To: discuss(a)mpich.org > Sent: Thursday, October 24, 2013 12:06:09 PM > Subject: Re: [mpich-discuss] mpich2 installation fails > > > > ok sir its my configuration file,plz provide me steps to form the > cluster. > > > > On Thu, Oct 24, 2013 at 10:02 PM, Ken Raffenetti < > raffenet(a)mcs.anl.gov > wrote: > > > Are you able to provide the information I asked for in the previous > email? > > > ----- Original Message ----- > > From: "bhimashankar dhappadhule" < dhappabn(a)gmail.com > > > To: discuss(a)mpich.org > > > > Sent: Thursday, October 24, 2013 11:17:15 AM > > Subject: Re: [mpich-discuss] mpich2 installation fails > > > > > > > > sir,i installed mpich2 on ubuntu 12.04 on three machine of my > > college.i need to form cluster please provide me steps to from > > cluster. > > sir its urgent, > > thank you. > > > > > > > > On Wed, Oct 23, 2013 at 12:09 AM, Ken Raffenetti < > > raffenet(a)mcs.anl.gov > wrote: > > > > > > This output is incomplete. Were you sure to pipe all output from > > configure into a separate file? e.g. > > > > ./configure | tee c.txt > > > > The config.log file that is generated in your MPICH directory > > during > > configure would also be helpful. > > > > > > ----- Original Message ----- > > > From: "bhimashankar dhappadhule" < dhappabn(a)gmail.com > > > > To: discuss(a)mpich.org > > > > > > > Sent: Tuesday, October 22, 2013 11:55:24 AM > > > Subject: Re: [mpich-discuss] mpich2 installation fails > > > > > > > > > > > > sir,i am sending my configuration file.plz help us urgently. > > > > > > > > > > > > On Tue, Oct 22, 2013 at 7:43 PM, Ken Raffenetti < > > > raffenet(a)mcs.anl.gov > wrote: > > > > > > > > > Hi, > > > > > > Can you send us the output of your configure command, as well as > > > the > > > config.log file that was generated? Additionally, if you do not > > > need > > > the Fortran bindings for MPICH, you can try adding --disable-f77 > > > and > > > --disable-fc to your configure and see if your build completes > > > then. > > > > > > Ken > > > > > > > > > > > > ----- Original Message ----- > > > > From: "bhimashankar dhappadhule" < dhappabn(a)gmail.com > > > > > To: discuss(a)mpich.org > > > > Sent: Tuesday, October 22, 2013 6:59:06 AM > > > > Subject: [mpich-discuss] mpich2 installation fails > > > > > > > > > > > > > > > > > > > > > > > > sir , > > > > while installing mpich2 on ubuntu 13.04 ,configuration > > > > successfully > > > > done but at time of command '' make ",i get error like shown in > > > > attachment.I urgently required your help sir. > > > > Thank you...! waiting for reply. > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] mpich2 installation fails
by bhimashankar dhappadhule 24 Oct '13

24 Oct '13

ok sir its my configuration file,plz provide me steps to form the cluster. On Thu, Oct 24, 2013 at 10:02 PM, Ken Raffenetti <raffenet(a)mcs.anl.gov>wrote: > Are you able to provide the information I asked for in the previous email? > > ----- Original Message ----- > > From: "bhimashankar dhappadhule" <dhappabn(a)gmail.com> > > To: discuss(a)mpich.org > > Sent: Thursday, October 24, 2013 11:17:15 AM > > Subject: Re: [mpich-discuss] mpich2 installation fails > > > > > > > > sir,i installed mpich2 on ubuntu 12.04 on three machine of my > > college.i need to form cluster please provide me steps to from > > cluster. > > sir its urgent, > > thank you. > > > > > > > > On Wed, Oct 23, 2013 at 12:09 AM, Ken Raffenetti < > > raffenet(a)mcs.anl.gov > wrote: > > > > > > This output is incomplete. Were you sure to pipe all output from > > configure into a separate file? e.g. > > > > ./configure | tee c.txt > > > > The config.log file that is generated in your MPICH directory during > > configure would also be helpful. > > > > > > ----- Original Message ----- > > > From: "bhimashankar dhappadhule" < dhappabn(a)gmail.com > > > > To: discuss(a)mpich.org > > > > > > > Sent: Tuesday, October 22, 2013 11:55:24 AM > > > Subject: Re: [mpich-discuss] mpich2 installation fails > > > > > > > > > > > > sir,i am sending my configuration file.plz help us urgently. > > > > > > > > > > > > On Tue, Oct 22, 2013 at 7:43 PM, Ken Raffenetti < > > > raffenet(a)mcs.anl.gov > wrote: > > > > > > > > > Hi, > > > > > > Can you send us the output of your configure command, as well as > > > the > > > config.log file that was generated? Additionally, if you do not > > > need > > > the Fortran bindings for MPICH, you can try adding --disable-f77 > > > and > > > --disable-fc to your configure and see if your build completes > > > then. > > > > > > Ken > > > > > > > > > > > > ----- Original Message ----- > > > > From: "bhimashankar dhappadhule" < dhappabn(a)gmail.com > > > > > To: discuss(a)mpich.org > > > > Sent: Tuesday, October 22, 2013 6:59:06 AM > > > > Subject: [mpich-discuss] mpich2 installation fails > > > > > > > > > > > > > > > > > > > > > > > > sir , > > > > while installing mpich2 on ubuntu 13.04 ,configuration > > > > successfully > > > > done but at time of command '' make ",i get error like shown in > > > > attachment.I urgently required your help sir. > > > > Thank you...! waiting for reply. > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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Re: [mpich-discuss] mpich2 installation fails
by Ken Raffenetti 24 Oct '13

24 Oct '13

Are you able to provide the information I asked for in the previous email? ----- Original Message ----- > From: "bhimashankar dhappadhule" <dhappabn(a)gmail.com> > To: discuss(a)mpich.org > Sent: Thursday, October 24, 2013 11:17:15 AM > Subject: Re: [mpich-discuss] mpich2 installation fails > > > > sir,i installed mpich2 on ubuntu 12.04 on three machine of my > college.i need to form cluster please provide me steps to from > cluster. > sir its urgent, > thank you. > > > > On Wed, Oct 23, 2013 at 12:09 AM, Ken Raffenetti < > raffenet(a)mcs.anl.gov > wrote: > > > This output is incomplete. Were you sure to pipe all output from > configure into a separate file? e.g. > > ./configure | tee c.txt > > The config.log file that is generated in your MPICH directory during > configure would also be helpful. > > > ----- Original Message ----- > > From: "bhimashankar dhappadhule" < dhappabn(a)gmail.com > > > To: discuss(a)mpich.org > > > > Sent: Tuesday, October 22, 2013 11:55:24 AM > > Subject: Re: [mpich-discuss] mpich2 installation fails > > > > > > > > sir,i am sending my configuration file.plz help us urgently. > > > > > > > > On Tue, Oct 22, 2013 at 7:43 PM, Ken Raffenetti < > > raffenet(a)mcs.anl.gov > wrote: > > > > > > Hi, > > > > Can you send us the output of your configure command, as well as > > the > > config.log file that was generated? Additionally, if you do not > > need > > the Fortran bindings for MPICH, you can try adding --disable-f77 > > and > > --disable-fc to your configure and see if your build completes > > then. > > > > Ken > > > > > > > > ----- Original Message ----- > > > From: "bhimashankar dhappadhule" < dhappabn(a)gmail.com > > > > To: discuss(a)mpich.org > > > Sent: Tuesday, October 22, 2013 6:59:06 AM > > > Subject: [mpich-discuss] mpich2 installation fails > > > > > > > > > > > > > > > > > > sir , > > > while installing mpich2 on ubuntu 13.04 ,configuration > > > successfully > > > done but at time of command '' make ",i get error like shown in > > > attachment.I urgently required your help sir. > > > Thank you...! waiting for reply. > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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