November 2015 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] static Linking Error
by Min Si 30 Nov '15

30 Nov '15

Hi, Have you tried to compile a simple hello world C program using the same options ? It looks like the compiler can not find libc at link time. And you may need to change "--static" to "-static" in the LDFLAGS option. Min On 11/30/15 7:57 AM, Doha Ehab wrote: > I have retried it using mpich-3.2 and the following command : > > ./configure --prefix=/home/doha/mpich-3.2/build/ > CC=/home/doha/buildroot-2015.08.1/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc > CFLAGS="-DHAVE_DEPRECATED_DNS_FUNCS -march=armv5 -mfpu=vfp -fPIC > -O3 -static" LDFLAGS="--static > -L/home/doha/buildroot-2015.08.1/output/host/usr/lib/ " > --host=arm-linux --disable-shared --enable-static > --with-device=ch3:sock --disable-f77 --disable-fc --disable-fortran > > and I got the following errors > > jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function > checkValidErrcode: error: undefined reference to 'stderr' > jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function > checkForUserErrcode: error: undefined reference to 'stderr' > jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function > MPIR_Err_preOrPostInit: error: undefined reference to 'stderr' > jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function > MPIR_Err_get_string: error: undefined reference to 'stderr' > jni/../prebuilt/libmpi.a(lib_libmpi_la-dbg_printf.o):dbg_printf.c:function > MPIU_dbg_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpi.a(lib_libmpi_la-dbg_printf.o):dbg_printf.c:function > MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout' > jni/../prebuilt/libmpi.a(lib_libmpi_la-mpid_vc.o):mpid_vc.c:function > MPIDI_Populate_vc_node_ids: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpi.a(lib_libmpi_la-mpid_vc.o):mpid_vc.c:function > MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b' > jni/../prebuilt/libmpi.a(lib_libmpi_la-mpidi_pg.o):mpidi_pg.c:function > getConnInfo: error: undefined reference to 'stdout' > jni/../prebuilt/libmpi.a(lib_libmpi_la-mpidi_pg.o):mpidi_pg.c:function > MPIDI_PG_Create: error: undefined reference to 'stdout' > jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function > MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function > MPIDU_Socki_wakeup.isra.2: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function > MPIDU_Sock_SetSockBufferSize: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpi.a(mplenv.o):mplenv.c:function MPL_env2range: > error: undefined reference to '__ctype_b' > jni/../prebuilt/libmpi.a(mplenv.o):mplenv.c:function MPL_env2int: > error: undefined reference to '__ctype_b' > jni/../prebuilt/libmpi.a(lib_libmpi_la-strerror.o):strerror.c:function > MPIU_Strerror: error: undefined reference to '__xpg_strerror_r' > jni/../prebuilt/libmpi.a(lib_libmpi_la-ch3u_handle_connection.o):ch3u_handle_connection.c:function > MPIDI_CH3U_Get_failed_group: error: undefined reference to '__ctype_b' > > any suggestions ? > > > > > On Mon, Nov 30, 2015 at 3:11 AM, dave <dave(a)mynatt.biz > <mailto:[email protected]>> wrote: > > Is it possible to upgrade without doing an uninstall of old > version, yet still keep setup files? > > Dave > ====================== > > > On 11/29/2015 05:52 PM, Balaji, Pavan wrote: > > Also, can you please try a newer version of mpich? mpich2-1.3 > was released before the big bang. The latest version is > mpich-3.2. > > http://www.mpich.org/downloads/ > > -- Pavan > > On Nov 29, 2015, at 3:26 PM, Min Si > <msi(a)il.is.s.u-tokyo.ac.jp > <mailto:[email protected]>> wrote: > > Hi, > > Please try ./configure --prefix=<your installation > directory> CC=<your compiler> CFLAGS=<your compile flags> > LDFLAGS=<your link flags> following with other options. > > Min > On 11/29/15 2:22 PM, Doha Ehab wrote: > > > On Sun, Nov 29, 2015 at 2:01 PM, Doha Ehab > <dohaehab(a)gmail.com <mailto:[email protected]>> wrote: > Hello, > I used buildroot to statically compile MPICH2-1.3 for > ARM devices using the following commands: > > export > CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/ > -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5 > -mfpu=vfp -O3" > > export LDFLAGS="--static > -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC" > > cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc > ./configure --prefix=/home/doha/mpich/build/ > --host=arm-linux --disable-shared --enable-static > --with-device=ch3:sock --disable-f77 --disable-fc > > when I compile the code using android ndk I get the > following error > > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Usage_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Error_printf: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Internal_error_printf: error: undefined reference > to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Internal_sys_error_printf: error: undefined > reference to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Msg_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function > MPIU_dbg_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function > MPIU_dump_dbg_memlog_to_stdout: error: undefined > reference to 'stdout' > jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function > MPID_Abort: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function > MPIDI_Populate_vc_node_ids: error: undefined reference > to '__errno_location' > jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function > MPIDI_Populate_vc_node_ids: error: undefined reference > to '__ctype_b' > jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function > MPIU_Strerror: error: undefined reference to > '__xpg_strerror_r' > jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function > accept_one_connection: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function > PMI_Init: error: undefined reference to '__errno_location' > jni/../prebuilt/libmpich.a(sock.o):sock.c:function > MPIDU_Socki_event_enqueue.isra.1: error: undefined > reference to '__errno_location' > jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function > MPL_env2range: error: undefined reference to '__ctype_b' > jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function > MPL_env2int: error: undefined reference to '__ctype_b' > I want to know what I'm missing and why it is not > linking properly > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > discuss mailing list > discuss(a)mpich.org <mailto:[email protected]> > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] static Linking Error
by Doha Ehab 30 Nov '15

30 Nov '15

I have retried it using mpich-3.2 and the following command : ./configure --prefix=/home/doha/mpich-3.2/build/ CC=/home/doha/buildroot-2015.08.1/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc CFLAGS="-DHAVE_DEPRECATED_DNS_FUNCS -march=armv5 -mfpu=vfp -fPIC -O3 -static" LDFLAGS="--static -L/home/doha/buildroot-2015.08.1/output/host/usr/lib/ " --host=arm-linux --disable-shared --enable-static --with-device=ch3:sock --disable-f77 --disable-fc --disable-fortran and I got the following errors jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function checkValidErrcode: error: undefined reference to 'stderr' jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function checkForUserErrcode: error: undefined reference to 'stderr' jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function MPIR_Err_preOrPostInit: error: undefined reference to 'stderr' jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function MPIR_Err_get_string: error: undefined reference to 'stderr' jni/../prebuilt/libmpi.a(lib_libmpi_la-dbg_printf.o):dbg_printf.c:function MPIU_dbg_printf: error: undefined reference to 'stdout' jni/../prebuilt/libmpi.a(lib_libmpi_la-dbg_printf.o):dbg_printf.c:function MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout' jni/../prebuilt/libmpi.a(lib_libmpi_la-mpid_vc.o):mpid_vc.c:function MPIDI_Populate_vc_node_ids: error: undefined reference to '__errno_location' jni/../prebuilt/libmpi.a(lib_libmpi_la-mpid_vc.o):mpid_vc.c:function MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b' jni/../prebuilt/libmpi.a(lib_libmpi_la-mpidi_pg.o):mpidi_pg.c:function getConnInfo: error: undefined reference to 'stdout' jni/../prebuilt/libmpi.a(lib_libmpi_la-mpidi_pg.o):mpidi_pg.c:function MPIDI_PG_Create: error: undefined reference to 'stdout' jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to '__errno_location' jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function MPIDU_Socki_wakeup.isra.2: error: undefined reference to '__errno_location' jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function MPIDU_Sock_SetSockBufferSize: error: undefined reference to '__errno_location' jni/../prebuilt/libmpi.a(mplenv.o):mplenv.c:function MPL_env2range: error: undefined reference to '__ctype_b' jni/../prebuilt/libmpi.a(mplenv.o):mplenv.c:function MPL_env2int: error: undefined reference to '__ctype_b' jni/../prebuilt/libmpi.a(lib_libmpi_la-strerror.o):strerror.c:function MPIU_Strerror: error: undefined reference to '__xpg_strerror_r' jni/../prebuilt/libmpi.a(lib_libmpi_la-ch3u_handle_connection.o):ch3u_handle_connection.c:function MPIDI_CH3U_Get_failed_group: error: undefined reference to '__ctype_b' any suggestions ? On Mon, Nov 30, 2015 at 3:11 AM, dave <dave(a)mynatt.biz> wrote: > Is it possible to upgrade without doing an uninstall of old version, yet > still keep setup files? > > Dave > ====================== > > > On 11/29/2015 05:52 PM, Balaji, Pavan wrote: > >> Also, can you please try a newer version of mpich? mpich2-1.3 was >> released before the big bang. The latest version is mpich-3.2. >> >> http://www.mpich.org/downloads/ >> >> -- Pavan >> >> On Nov 29, 2015, at 3:26 PM, Min Si <msi(a)il.is.s.u-tokyo.ac.jp> wrote: >>> >>> Hi, >>> >>> Please try ./configure --prefix=<your installation directory> CC=<your >>> compiler> CFLAGS=<your compile flags> LDFLAGS=<your link flags> following >>> with other options. >>> >>> Min >>> On 11/29/15 2:22 PM, Doha Ehab wrote: >>> >>>> >>>> On Sun, Nov 29, 2015 at 2:01 PM, Doha Ehab <dohaehab(a)gmail.com> wrote: >>>> Hello, >>>> I used buildroot to statically compile MPICH2-1.3 for ARM devices using >>>> the following commands: >>>> >>>> export CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/ >>>> -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5 -mfpu=vfp -O3" >>>> >>>> export LDFLAGS="--static >>>> -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC" >>>> >>>> cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc >>>> ./configure --prefix=/home/doha/mpich/build/ >>>> --host=arm-linux --disable-shared --enable-static >>>> --with-device=ch3:sock --disable-f77 --disable-fc >>>> >>>> when I compile the code using android ndk I get the following error >>>> >>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function >>>> MPIU_Usage_printf: error: undefined reference to 'stdout' >>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function >>>> MPIU_Error_printf: error: undefined reference to 'stderr' >>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function >>>> MPIU_Internal_error_printf: error: undefined reference to 'stderr' >>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function >>>> MPIU_Internal_sys_error_printf: error: undefined reference to 'stderr' >>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function >>>> MPIU_Msg_printf: error: undefined reference to 'stdout' >>>> jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function >>>> MPIU_dbg_printf: error: undefined reference to 'stdout' >>>> jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function >>>> MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout' >>>> jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function >>>> MPID_Abort: error: undefined reference to 'stderr' >>>> jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function >>>> MPIDI_Populate_vc_node_ids: error: undefined reference to '__errno_location' >>>> jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function >>>> MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b' >>>> jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function >>>> MPIU_Strerror: error: undefined reference to '__xpg_strerror_r' >>>> jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function >>>> accept_one_connection: error: undefined reference to '__errno_location' >>>> jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function >>>> PMI_Init: error: undefined reference to '__errno_location' >>>> jni/../prebuilt/libmpich.a(sock.o):sock.c:function >>>> MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to >>>> '__errno_location' >>>> jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2range: >>>> error: undefined reference to '__ctype_b' >>>> jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2int: >>>> error: undefined reference to '__ctype_b' >>>> I want to know what I'm missing and why it is not linking properly >>>> >>>> _______________________________________________ >>>> discuss mailing list discuss(a)mpich.org >>>> To manage subscription options or unsubscribe: >>>> https://lists.mpich.org/mailman/listinfo/discuss >>>> >>>> >>>> >>>> _______________________________________________ >>>> discuss mailing list >>>> discuss(a)mpich.org >>>> >>>> To manage subscription options or unsubscribe: >>>> >>>> https://lists.mpich.org/mailman/listinfo/discuss >>>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> >> > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] static Linking Error
by dave 29 Nov '15

29 Nov '15

Is it possible to upgrade without doing an uninstall of old version, yet still keep setup files? Dave ====================== On 11/29/2015 05:52 PM, Balaji, Pavan wrote: > Also, can you please try a newer version of mpich? mpich2-1.3 was released before the big bang. The latest version is mpich-3.2. > > http://www.mpich.org/downloads/ > > -- Pavan > >> On Nov 29, 2015, at 3:26 PM, Min Si <msi(a)il.is.s.u-tokyo.ac.jp> wrote: >> >> Hi, >> >> Please try ./configure --prefix=<your installation directory> CC=<your compiler> CFLAGS=<your compile flags> LDFLAGS=<your link flags> following with other options. >> >> Min >> On 11/29/15 2:22 PM, Doha Ehab wrote: >>> >>> On Sun, Nov 29, 2015 at 2:01 PM, Doha Ehab <dohaehab(a)gmail.com> wrote: >>> Hello, >>> I used buildroot to statically compile MPICH2-1.3 for ARM devices using the following commands: >>> >>> export CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/ -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5 -mfpu=vfp -O3" >>> >>> export LDFLAGS="--static -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC" >>> >>> cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc ./configure --prefix=/home/doha/mpich/build/ --host=arm-linux --disable-shared --enable-static --with-device=ch3:sock --disable-f77 --disable-fc >>> >>> when I compile the code using android ndk I get the following error >>> >>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Usage_printf: error: undefined reference to 'stdout' >>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Error_printf: error: undefined reference to 'stderr' >>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Internal_error_printf: error: undefined reference to 'stderr' >>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Internal_sys_error_printf: error: undefined reference to 'stderr' >>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Msg_printf: error: undefined reference to 'stdout' >>> jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function MPIU_dbg_printf: error: undefined reference to 'stdout' >>> jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout' >>> jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function MPID_Abort: error: undefined reference to 'stderr' >>> jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function MPIDI_Populate_vc_node_ids: error: undefined reference to '__errno_location' >>> jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b' >>> jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function MPIU_Strerror: error: undefined reference to '__xpg_strerror_r' >>> jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function accept_one_connection: error: undefined reference to '__errno_location' >>> jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function PMI_Init: error: undefined reference to '__errno_location' >>> jni/../prebuilt/libmpich.a(sock.o):sock.c:function MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to '__errno_location' >>> jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2range: error: undefined reference to '__ctype_b' >>> jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2int: error: undefined reference to '__ctype_b' >>> >>> I want to know what I'm missing and why it is not linking properly >>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> >>> >>> >>> _______________________________________________ >>> discuss mailing list >>> discuss(a)mpich.org >>> >>> To manage subscription options or unsubscribe: >>> >>> https://lists.mpich.org/mailman/listinfo/discuss >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] static Linking Error
by Balaji, Pavan 29 Nov '15

29 Nov '15

Also, can you please try a newer version of mpich? mpich2-1.3 was released before the big bang. The latest version is mpich-3.2. http://www.mpich.org/downloads/ -- Pavan > On Nov 29, 2015, at 3:26 PM, Min Si <msi(a)il.is.s.u-tokyo.ac.jp> wrote: > > Hi, > > Please try ./configure --prefix=<your installation directory> CC=<your compiler> CFLAGS=<your compile flags> LDFLAGS=<your link flags> following with other options. > > Min > On 11/29/15 2:22 PM, Doha Ehab wrote: >> >> >> On Sun, Nov 29, 2015 at 2:01 PM, Doha Ehab <dohaehab(a)gmail.com> wrote: >> Hello, >> I used buildroot to statically compile MPICH2-1.3 for ARM devices using the following commands: >> >> export CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/ -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5 -mfpu=vfp -O3" >> >> export LDFLAGS="--static -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC" >> >> cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc ./configure --prefix=/home/doha/mpich/build/ --host=arm-linux --disable-shared --enable-static --with-device=ch3:sock --disable-f77 --disable-fc >> >> when I compile the code using android ndk I get the following error >> >> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Usage_printf: error: undefined reference to 'stdout' >> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Error_printf: error: undefined reference to 'stderr' >> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Internal_error_printf: error: undefined reference to 'stderr' >> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Internal_sys_error_printf: error: undefined reference to 'stderr' >> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Msg_printf: error: undefined reference to 'stdout' >> jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function MPIU_dbg_printf: error: undefined reference to 'stdout' >> jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout' >> jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function MPID_Abort: error: undefined reference to 'stderr' >> jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function MPIDI_Populate_vc_node_ids: error: undefined reference to '__errno_location' >> jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b' >> jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function MPIU_Strerror: error: undefined reference to '__xpg_strerror_r' >> jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function accept_one_connection: error: undefined reference to '__errno_location' >> jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function PMI_Init: error: undefined reference to '__errno_location' >> jni/../prebuilt/libmpich.a(sock.o):sock.c:function MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to '__errno_location' >> jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2range: error: undefined reference to '__ctype_b' >> jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2int: error: undefined reference to '__ctype_b' >> >> I want to know what I'm missing and why it is not linking properly >> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss >> >> >> >> _______________________________________________ >> discuss mailing list >> discuss(a)mpich.org >> >> To manage subscription options or unsubscribe: >> >> https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] static Linking Error
by Min Si 29 Nov '15

29 Nov '15

Hi, Please try ./configure --prefix=<your installation directory> CC=<your compiler> CFLAGS=<your compile flags> LDFLAGS=<your link flags> following with other options. Min On 11/29/15 2:22 PM, Doha Ehab wrote: > > > On Sun, Nov 29, 2015 at 2:01 PM, Doha Ehab <dohaehab(a)gmail.com > <mailto:[email protected]>> wrote: > > Hello, > I used buildroot to statically compile MPICH2-1.3 for ARM devices > using the following commands: > > export > CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/ > -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5 -mfpu=vfp -O3" > > export LDFLAGS="--static > -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC" > > cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc > ./configure --prefix=/home/doha/mpich/build/ --host=arm-linux > --disable-shared --enable-static --with-device=ch3:sock > --disable-f77 --disable-fc > > when I compile the code using android ndk I get the following error > > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Usage_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Error_printf: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Internal_error_printf: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Internal_sys_error_printf: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Msg_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function > MPIU_dbg_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function > MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function > MPID_Abort: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function > MPIDI_Populate_vc_node_ids: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function > MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b' > jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function > MPIU_Strerror: error: undefined reference to '__xpg_strerror_r' > jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function > accept_one_connection: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function > PMI_Init: error: undefined reference to '__errno_location' > jni/../prebuilt/libmpich.a(sock.o):sock.c:function > MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function > MPL_env2range: error: undefined reference to '__ctype_b' > jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2int: > error: undefined reference to '__ctype_b' > I want to know what I'm missing and why it is not linking properly > > _______________________________________________ > discuss mailing list discuss(a)mpich.org <mailto:[email protected]> > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > > > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] static Linking Error
by Doha Ehab 29 Nov '15

29 Nov '15

On Sun, Nov 29, 2015 at 2:01 PM, Doha Ehab <dohaehab(a)gmail.com> wrote: > Hello, > I used buildroot to statically compile MPICH2-1.3 for ARM devices using > the following commands: > > export CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/ > -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5 -mfpu=vfp -O3" > > export LDFLAGS="--static > -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC" > > cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc > ./configure --prefix=/home/doha/mpich/build/ --host=arm-linux > --disable-shared --enable-static --with-device=ch3:sock --disable-f77 > --disable-fc > > when I compile the code using android ndk I get the following error > > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Usage_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Error_printf: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Internal_error_printf: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Internal_sys_error_printf: error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function > MPIU_Msg_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function > MPIU_dbg_printf: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function > MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout' > jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function MPID_Abort: > error: undefined reference to 'stderr' > jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function > MPIDI_Populate_vc_node_ids: error: undefined reference to '__errno_location' > jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function > MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b' > jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function MPIU_Strerror: > error: undefined reference to '__xpg_strerror_r' > jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function > accept_one_connection: error: undefined reference to '__errno_location' > jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function PMI_Init: > error: undefined reference to '__errno_location' > jni/../prebuilt/libmpich.a(sock.o):sock.c:function > MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to > '__errno_location' > jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2range: error: > undefined reference to '__ctype_b' > jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2int: error: > undefined reference to '__ctype_b' > > I want to know what I'm missing and why it is not linking properly > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss > _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

(no subject)
by Doha Ehab 29 Nov '15

29 Nov '15

Hello, I used buildroot to statically compile MPICH2-1.3 for ARM devices using the following commands: export CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/ -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5 -mfpu=vfp -O3" export LDFLAGS="--static -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC" cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc ./configure --prefix=/home/doha/mpich/build/ --host=arm-linux --disable-shared --enable-static --with-pm=smpd --with-device=ch3:sock --disable-f77 --disable-fc when I compile the code using android ndk I get the following error jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Usage_printf: error: undefined reference to 'stdout' jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Error_printf: error: undefined reference to 'stderr' jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Internal_error_printf: error: undefined reference to 'stderr' jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Internal_sys_error_printf: error: undefined reference to 'stderr' jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function MPIU_Msg_printf: error: undefined reference to 'stdout' jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function MPIU_dbg_printf: error: undefined reference to 'stdout' jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout' jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function MPID_Abort: error: undefined reference to 'stderr' jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function MPIDI_Populate_vc_node_ids: error: undefined reference to '__errno_location' jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b' jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function MPIU_Strerror: error: undefined reference to '__xpg_strerror_r' jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function accept_one_connection: error: undefined reference to '__errno_location' jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function PMI_Init: error: undefined reference to '__errno_location' jni/../prebuilt/libmpich.a(sock.o):sock.c:function MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to '__errno_location' jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2range: error: undefined reference to '__ctype_b' jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2int: error: undefined reference to '__ctype_b' I want to know what I'm missing and why it is not linking properly _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] MPI_Gather fails with 2048 processes and 4096 MB total
by Archer, Charles J 26 Nov '15

26 Nov '15

FYI, we hit various flavors of this problem when I was still at IBM, I think mostly in weather codes. Apparently Cray hit this too: https://trac.mpich.org/projects/mpich/ticket/1767 We pretty much told our customers back then that a fix was forthcoming (with no ETA :) )with the revamp of datatypes to use internal 64-bit counts. We also provided workarounds. In the case of this gather operation, we asked the customer to implement gather as a flat tree using point to point. Root posts irecvs, then barrier, children send to root. IRC, the giant gather we were debugging was at the very end of the application and used to gather some statistics for IO at the root, so it wasn’t critical to perform well. I also attempted a workaround using some derived datatypes, but I hit another truncation in the datatype code itself :\ I should see if I can dig up that implementation and make sure it isn’t still broken for large counts. On Nov 26, 2015, at 12:14 PM, Balaji, Pavan <balaji(a)anl.gov<mailto:[email protected]>> wrote: Thanks for reporting. This looks like an integer-overflow issue, which fails when the summation of data elements from all processes is larger than INT_MAX (2 billion). We'll look into it. I've created a ticket for it, and added you as the reporter, so you'll get notified as they are updates. http://trac.mpich.org/projects/mpich/ticket/2317 Rob: can you create a simple test program for this and add it to the test bucket, so it shows up on the nightlies? Thanks, -- Pavan On Nov 26, 2015, at 10:18 AM, Florian.Willich(a)dlr.de wrote: Dear mpich discussion group, the following issue appeared when running some benchmarks with MPI Gather: Gathering data (calling MPI_Gather(...) ) involing 2048 processes and 2 MB of data (4096 MB total) that each process sends fails with the following output: ____________________________ Rank 1024 [Thu Nov 26 09:43:16 2015] [c1-0c1s12n3] Fatal error in PMPI_Gather: Invalid count, error stack: PMPI_Gather(959)......: MPI_Gather(sbuf=0x2aaab826c010, scount=524288, MPI_INT, rbuf=(nil), rcount=524288, MPI_INT, root=0, MPI_COMM_WORLD) failed MPIR_Gather_impl(775).: MPIR_Gather(735)......: MPIR_Gather_intra(347): MPIC_Send(360)........: Negative count, value is -2147483648 _pmiu_daemon(SIGCHLD): [NID 00307] [c1-0c1s12n3] [Thu Nov 26 09:43:16 2015] PE RANK 1024 exit signal Aborted [NID 00307] 2015-11-26 09:43:16 Apid 949450: initiated application termination Application 949450 exit codes: 134 Application 949450 exit signals: Killed Application 949450 resources: utime ~1s, stime ~137s, Rss ~2110448, inblocks ~617782, outblocks ~1659320 ____________________________ The following are some tests that I ran to better understand the problem: 2047 processes - 2 MB (4094 MB total) -> works! 2048 processes - 2047.5 KB (~1.999512 MB) (4095 MB total) -> works! 2048 processes - 3 MB (6144 MB total) -> fails: ____________________________ Rank 1024 [Thu Nov 26 09:41:15 2015] [c1-0c1s12n3] Fatal error in PMPI_Gather: Invalid count, error stack: PMPI_Gather(959)......: MPI_Gather(sbuf=0x2aaab826c010, scount=786432, MPI_INT, rbuf=(nil), rcount=786432, MPI_INT, root=0, MPI_COMM_WORLD) failed MPIR_Gather_impl(775).: MPIR_Gather(735)......: MPIR_Gather_intra(347): MPIC_Send(360)........: Negative count, value is -1073741824 _pmiu_daemon(SIGCHLD): [NID 00307] [c1-0c1s12n3] [Thu Nov 26 09:41:15 2015] PE RANK 1024 exit signal Aborted [NID 00307] 2015-11-26 09:41:15 Apid 949448: initiated application termination Application 949448 exit codes: 134 Application 949448 exit signals: Killed Application 949448 resources: utime ~1s, stime ~139s, Rss ~3159984, inblocks ~617782, outblocks ~1659351 ____________________________ 2047 processes - 3 MB (6141 MB total) -> fails: ____________________________ Rank 1024 [Thu Nov 26 09:40:31 2015] [c1-0c1s12n3] Fatal error in PMPI_Gather: Invalid count, error stack: PMPI_Gather(959)......: MPI_Gather(sbuf=0x2aaab826c010, scount=786432, MPI_INT, rbuf=(nil), rcount=786432, MPI_INT, root=0, MPI_COMM_WORLD) failed MPIR_Gather_impl(775).: MPIR_Gather(735)......: MPIR_Gather_intra(347): MPIC_Send(360)........: Negative count, value is -1076887552 _pmiu_daemon(SIGCHLD): [NID 00307] [c1-0c1s12n3] [Thu Nov 26 09:40:32 2015] PE RANK 1024 exit signal Aborted [NID 00307] 2015-11-26 09:40:32 Apid 949446: initiated application termination Application 949446 exit codes: 134 Application 949446 exit signals: Killed Application 949446 resources: utime ~1s, stime ~134s, Rss ~3157072, inblocks ~617780, outblocks ~1659351 ____________________________ 8 processes - 625 MB (5000 MB total) -> works! I can think of some pitfalls that might cause this issue but I do not have the knowledge of the internally called routines to check them. Is someone familier with the implementation of MPI_Gather(...) and willing to help me? Best regards Florian Deutsches Zentrum für Luft- und Raumfahrt e. V. (DLR) German Aerospace Center Institute of Planetary Research | Planetary Physics | Rutherfordstraße 2 | 12489 Berlin Florian Willich| Intern - Software Developer (Parallel Applications) florian.willlich(a)dlr.de DLR.de _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] MPI_Gather fails with 2048 processes and 4096 MB total
by Balaji, Pavan 26 Nov '15

26 Nov '15

Thanks for reporting. This looks like an integer-overflow issue, which fails when the summation of data elements from all processes is larger than INT_MAX (2 billion). We'll look into it. I've created a ticket for it, and added you as the reporter, so you'll get notified as they are updates. http://trac.mpich.org/projects/mpich/ticket/2317 Rob: can you create a simple test program for this and add it to the test bucket, so it shows up on the nightlies? Thanks, -- Pavan > On Nov 26, 2015, at 10:18 AM, Florian.Willich(a)dlr.de wrote: > > Dear mpich discussion group, > > the following issue appeared when running some benchmarks with MPI Gather: > > Gathering data (calling MPI_Gather(...) ) involing 2048 processes and 2 MB of data (4096 MB total) that each process sends fails with the following output: > ____________________________ > > Rank 1024 [Thu Nov 26 09:43:16 2015] [c1-0c1s12n3] Fatal error in PMPI_Gather: Invalid count, error stack: > PMPI_Gather(959)......: MPI_Gather(sbuf=0x2aaab826c010, scount=524288, MPI_INT, rbuf=(nil), rcount=524288, MPI_INT, root=0, MPI_COMM_WORLD) failed > MPIR_Gather_impl(775).: > MPIR_Gather(735)......: > MPIR_Gather_intra(347): > MPIC_Send(360)........: Negative count, value is -2147483648 > _pmiu_daemon(SIGCHLD): [NID 00307] [c1-0c1s12n3] [Thu Nov 26 09:43:16 2015] PE RANK 1024 exit signal Aborted > [NID 00307] 2015-11-26 09:43:16 Apid 949450: initiated application termination > Application 949450 exit codes: 134 > Application 949450 exit signals: Killed > Application 949450 resources: utime ~1s, stime ~137s, Rss ~2110448, inblocks ~617782, outblocks ~1659320 > ____________________________ > > The following are some tests that I ran to better understand the problem: > > 2047 processes - 2 MB (4094 MB total) -> works! > > 2048 processes - 2047.5 KB (~1.999512 MB) (4095 MB total) -> works! > > 2048 processes - 3 MB (6144 MB total) -> fails: > ____________________________ > > Rank 1024 [Thu Nov 26 09:41:15 2015] [c1-0c1s12n3] Fatal error in PMPI_Gather: Invalid count, error stack: > PMPI_Gather(959)......: MPI_Gather(sbuf=0x2aaab826c010, scount=786432, MPI_INT, rbuf=(nil), rcount=786432, MPI_INT, root=0, MPI_COMM_WORLD) failed > MPIR_Gather_impl(775).: > MPIR_Gather(735)......: > MPIR_Gather_intra(347): > MPIC_Send(360)........: Negative count, value is -1073741824 > _pmiu_daemon(SIGCHLD): [NID 00307] [c1-0c1s12n3] [Thu Nov 26 09:41:15 2015] PE RANK 1024 exit signal Aborted > [NID 00307] 2015-11-26 09:41:15 Apid 949448: initiated application termination > Application 949448 exit codes: 134 > Application 949448 exit signals: Killed > Application 949448 resources: utime ~1s, stime ~139s, Rss ~3159984, inblocks ~617782, outblocks ~1659351 > ____________________________ > > 2047 processes - 3 MB (6141 MB total) -> fails: > ____________________________ > > Rank 1024 [Thu Nov 26 09:40:31 2015] [c1-0c1s12n3] Fatal error in PMPI_Gather: Invalid count, error stack: > PMPI_Gather(959)......: MPI_Gather(sbuf=0x2aaab826c010, scount=786432, MPI_INT, rbuf=(nil), rcount=786432, MPI_INT, root=0, MPI_COMM_WORLD) failed > MPIR_Gather_impl(775).: > MPIR_Gather(735)......: > MPIR_Gather_intra(347): > MPIC_Send(360)........: Negative count, value is -1076887552 > _pmiu_daemon(SIGCHLD): [NID 00307] [c1-0c1s12n3] [Thu Nov 26 09:40:32 2015] PE RANK 1024 exit signal Aborted > [NID 00307] 2015-11-26 09:40:32 Apid 949446: initiated application termination > Application 949446 exit codes: 134 > Application 949446 exit signals: Killed > Application 949446 resources: utime ~1s, stime ~134s, Rss ~3157072, inblocks ~617780, outblocks ~1659351 > ____________________________ > > 8 processes - 625 MB (5000 MB total) -> works! > > I can think of some pitfalls that might cause this issue but I do not have the knowledge of the internally called routines to check them. Is someone familier with the implementation of MPI_Gather(...) and willing to help me? > > Best regards > > Florian > > Deutsches Zentrum für Luft- und Raumfahrt e. V. (DLR) > German Aerospace Center > Institute of Planetary Research | Planetary Physics | Rutherfordstraße 2 | 12489 Berlin > > Florian Willich| Intern - Software Developer (Parallel Applications) > florian.willlich(a)dlr.de > DLR.de > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0

Re: [mpich-discuss] a problem in build MPICH
by Balaji, Pavan 26 Nov '15

26 Nov '15

configure: error: No Fortran 77 compiler found. If you don't need to build any Fortran programs, you can disable Fortran support using --disable-fortran. If you do want to build Fortran programs, you need to install a Fortran compiler such as gfortran or ifort before you can proceed. > On Nov 26, 2015, at 6:02 AM, 蔡邹青 <caizouqing(a)163.com> wrote: > > I can not find the problems in build MPICH.It always accur *** 没有指明目标并且找不到 makefile。停止。. > > > > > <c.txt><m.txt>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

1 0