January 2020 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] mpich 3.3.2 fails to build with gcc10
by Ken Raffenetti 31 Jan '20

31 Jan '20

There is some internal debate about this issue within the project. At this time, we have no plan to fix. We will recommend the same -fallow-argument-mismatch workaround. Ken On 1/29/20 3:09 AM, Zbigniew Jędrzejewski-Szmek via discuss wrote: > Hi, > > Fedora is updating to gcc 10 now, and mpich is one of the packages > that failed to rebuild [1]. The issue was discussed in gcc bugtracker [2] > The workaround of adding -fallow-argument-mismatch "fixes" the issue [3]. > Is there a plan for a better long-term fix? > > [1] https://bugzilla.redhat.com/show_bug.cgi?id=1795817 > [2] https://gcc.gnu.org/bugzilla/show_bug.cgi?id=91731 > [3] https://src.fedoraproject.org/rpms/mpich/c/36f3761857c27b819831eda0ca97ae0c… > > Zbyszek > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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mpich 3.3.2 fails to build with gcc10
by Zbigniew Jędrzejewski-Szmek 29 Jan '20

29 Jan '20

Hi, Fedora is updating to gcc 10 now, and mpich is one of the packages that failed to rebuild [1]. The issue was discussed in gcc bugtracker [2] The workaround of adding -fallow-argument-mismatch "fixes" the issue [3]. Is there a plan for a better long-term fix? [1] https://bugzilla.redhat.com/show_bug.cgi?id=1795817 [2] https://gcc.gnu.org/bugzilla/show_bug.cgi?id=91731 [3] https://src.fedoraproject.org/rpms/mpich/c/36f3761857c27b819831eda0ca97ae0c… Zbyszek

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Re: [mpich-discuss] MPICH 3.3.2 Unable to Build on macOS 10.15
by Songchen Tan 28 Jan '20

28 Jan '20

Hi Ken, Great, it works for me. Thank you so much! Songchen Songchen Tan 10292504 College of Chemistry, University of California, Berkeley 97420, U. S. A. Email: tansongchen(a)berkeley.edu Cell: (+86)13501382788 在 2020年1月28日 +0800 23:43，Raffenetti, Kenneth J. via discuss <discuss(a)mpich.org>，写道： > My mistake. The correct way to disable is to use an empty string. > > ./configure pac_cv_tls="" > > Ken > > On 1/27/20 10:12 PM, Songchen Tan via discuss wrote: > > Hi Ken, > > > > I tried this, but still getting an error: > > > > In file included from ./src/include/mpiimpl.h(214), > > > > from src/mpi/attr/attr_delete.c(8): > > > > ./src/include/mpir_thread.h(77): error: identifier "none" is undefined > > > > extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; > > > > ^ > > > > > > In file included from ./src/include/mpiimpl.h(214), > > > > from src/mpi/attr/attr_delete.c(8): > > > > ./src/include/mpir_thread.h(77): error: "MPIR_Per_thread_t" has already > > been declared in the current scope > > > > extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; > > > > ^ > > > > > > In file included from ./src/include/mpiimpl.h(214), > > > > from src/mpi/attr/attr_delete.c(8): > > > > ./src/include/mpir_thread.h(77): error: expected a ";" > > > > extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; > > > > > > It seems that “none” is not a good value of this variable. > > > > Sincerely yours, > > Songchen > > > > > > Songchen Tan 10292504 > > College of Chemistry, University of California, Berkeley 97420, U. S. A. > > Email: tansongchen(a)berkeley.edu > > Cell: (+86)13501382788 > > 在 2020年1月28日 +0800 10:31，Raffenetti, Kenneth J. via discuss > > <discuss(a)mpich.org>，写道： > > > We identified this as an Intel compiler issue and added a workaround in > > > https://github.com/pmodels/mpich/commit/59fd76de45bb4c5bfeff08883c4a3799052… > > > to address it, but your report indicates it is still an issue. > > > Unfortunately I do not have access to Intel compilers for macOS at the > > > moment to test another fix. > > > > > > You can disable thread-local storage entirely in order to build with the > > > configure option below. Note this may have negative performance > > > implications for multi-threaded applications. > > > > > > ./configure pac_cv_tls=none [...] > > > > > > Ken > > > > > > On 1/27/20 3:48 PM, Songchen Tan via discuss wrote: > > > > Hi Ken, > > > > > > > > No problem, it is attached. > > > > > > > > By the way, I also tried again on macOS 10.14, it failed due to the same > > > > reason, so it is unlikely that the problem is related to macOS 10.15. > > > > > > > > Sincerely yours, > > > > Songchen > > > > > > > > Songchen Tan 10292504 > > > > College of Chemistry, University of California, Berkeley 97420, U. S. A. > > > > Email: tansongchen(a)berkeley.edu > > > > Cell: (+86)13501382788 > > > > 在 2020年1月28日 +0800 03:57，Raffenetti, Kenneth J. via discuss > > > > <discuss(a)mpich.org>，写道： > > > > > Can you also send along src/mpl/config.log from your build directory? > > > > > > > > > > Ken > > > > > > > > > > On 1/27/20 11:57 AM, Songchen Tan via discuss wrote: > > > > > > Dear Developers, > > > > > > > > > > > > I am Songchen Tan at UC Berkeley, recently I am trying to use MPICH on > > > > > > macOS 10.15. Though binaries via homebrew is available, I would like to > > > > > > build from source in order to configure it with Intel compilers (icc, > > > > > > icpc and ifort). > > > > > > > > > > > > To reproduce the problem: > > > > > > > > > > > > 1. Download the source in ~/Applications/; > > > > > > 2. Unzip with `tar -xvzf mpich-3.3.2.tar.gz`, then `cd mpich-3.3.2`; > > > > > > 3. Run `./configure --prefix=/usr/local/Cellar/mpich/3.3.2 CC=icc > > > > > > CXX=icpc F77=ifort FC=ifort 2>&1 | tee c.txt`; > > > > > > 4. Build with `make VERBOSE=1 2>&1 | tee m.txt`. > > > > > > 5. Then I am noticed: `Undefined symbols for architecture > > > > > > x86_64: “__ZTHMPIR_Per_thread”`. > > > > > > > > > > > > > > > > > > The generated `c.txt` and `m.txt` is attached. Thank you so much for > > > > > > your help. > > > > > > > > > > > > Sincerely yours, > > > > > > Songchen > > > > > > > > > > > > Songchen Tan 10292504 > > > > > > College of Chemistry, University of California, Berkeley 97420, U. > > > > > > S. A. > > > > > > Email: tansongchen(a)berkeley.edu > > > > > > Cell: (+86)13501382788 > > > > > > > > > > > > _______________________________________________ > > > > > > discuss mailing list discuss(a)mpich.org > > > > > > To manage subscription options or unsubscribe: > > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > > > > _______________________________________________ > > > > > discuss mailing list discuss(a)mpich.org > > > > > To manage subscription options or unsubscribe: > > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] MPICH 3.3.2 Unable to Build on macOS 10.15
by Raffenetti, Kenneth J. 28 Jan '20

28 Jan '20

My mistake. The correct way to disable is to use an empty string. ./configure pac_cv_tls="" Ken On 1/27/20 10:12 PM, Songchen Tan via discuss wrote: > Hi Ken, > > I tried this, but still getting an error: > > In file included from ./src/include/mpiimpl.h(214), > > from src/mpi/attr/attr_delete.c(8): > > ./src/include/mpir_thread.h(77): error: identifier "none" is undefined > > extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; > > ^ > > > In file included from ./src/include/mpiimpl.h(214), > > from src/mpi/attr/attr_delete.c(8): > > ./src/include/mpir_thread.h(77): error: "MPIR_Per_thread_t" has already > been declared in the current scope > > extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; > > ^ > > > In file included from ./src/include/mpiimpl.h(214), > > from src/mpi/attr/attr_delete.c(8): > > ./src/include/mpir_thread.h(77): error: expected a ";" > > extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; > > > It seems that “none” is not a good value of this variable. > > Sincerely yours, > Songchen > > > Songchen Tan 10292504 > College of Chemistry, University of California, Berkeley 97420, U. S. A. > Email: tansongchen(a)berkeley.edu > Cell: (+86)13501382788 > 在 2020年1月28日 +0800 10:31，Raffenetti, Kenneth J. via discuss > <discuss(a)mpich.org>，写道： >> We identified this as an Intel compiler issue and added a workaround in >> https://github.com/pmodels/mpich/commit/59fd76de45bb4c5bfeff08883c4a3799052… >> to address it, but your report indicates it is still an issue. >> Unfortunately I do not have access to Intel compilers for macOS at the >> moment to test another fix. >> >> You can disable thread-local storage entirely in order to build with the >> configure option below. Note this may have negative performance >> implications for multi-threaded applications. >> >> ./configure pac_cv_tls=none [...] >> >> Ken >> >> On 1/27/20 3:48 PM, Songchen Tan via discuss wrote: >>> Hi Ken, >>> >>> No problem, it is attached. >>> >>> By the way, I also tried again on macOS 10.14, it failed due to the same >>> reason, so it is unlikely that the problem is related to macOS 10.15. >>> >>> Sincerely yours, >>> Songchen >>> >>> Songchen Tan 10292504 >>> College of Chemistry, University of California, Berkeley 97420, U. S. A. >>> Email: tansongchen(a)berkeley.edu >>> Cell: (+86)13501382788 >>> 在 2020年1月28日 +0800 03:57，Raffenetti, Kenneth J. via discuss >>> <discuss(a)mpich.org>，写道： >>>> Can you also send along src/mpl/config.log from your build directory? >>>> >>>> Ken >>>> >>>> On 1/27/20 11:57 AM, Songchen Tan via discuss wrote: >>>>> Dear Developers, >>>>> >>>>> I am Songchen Tan at UC Berkeley, recently I am trying to use MPICH on >>>>> macOS 10.15. Though binaries via homebrew is available, I would like to >>>>> build from source in order to configure it with Intel compilers (icc, >>>>> icpc and ifort). >>>>> >>>>> To reproduce the problem: >>>>> >>>>> 1. Download the source in ~/Applications/; >>>>> 2. Unzip with `tar -xvzf mpich-3.3.2.tar.gz`, then `cd mpich-3.3.2`; >>>>> 3. Run `./configure --prefix=/usr/local/Cellar/mpich/3.3.2 CC=icc >>>>> CXX=icpc F77=ifort FC=ifort 2>&1 | tee c.txt`; >>>>> 4. Build with `make VERBOSE=1 2>&1 | tee m.txt`. >>>>> 5. Then I am noticed: `Undefined symbols for architecture >>>>> x86_64: “__ZTHMPIR_Per_thread”`. >>>>> >>>>> >>>>> The generated `c.txt` and `m.txt` is attached. Thank you so much for >>>>> your help. >>>>> >>>>> Sincerely yours, >>>>> Songchen >>>>> >>>>> Songchen Tan 10292504 >>>>> College of Chemistry, University of California, Berkeley 97420, U. >>>>> S. A. >>>>> Email: tansongchen(a)berkeley.edu >>>>> Cell: (+86)13501382788 >>>>> >>>>> _______________________________________________ >>>>> discuss mailing list discuss(a)mpich.org >>>>> To manage subscription options or unsubscribe: >>>>> https://lists.mpich.org/mailman/listinfo/discuss >>>>> >>>> _______________________________________________ >>>> discuss mailing list discuss(a)mpich.org >>>> To manage subscription options or unsubscribe: >>>> https://lists.mpich.org/mailman/listinfo/discuss >>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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Re: [mpich-discuss] MPICH 3.3.2 Unable to Build on macOS 10.15
by Songchen Tan 27 Jan '20

27 Jan '20

Hi Ken, I tried this, but still getting an error: In file included from ./src/include/mpiimpl.h(214), from src/mpi/attr/attr_delete.c(8): ./src/include/mpir_thread.h(77): error: identifier "none" is undefined extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; ^ In file included from ./src/include/mpiimpl.h(214), from src/mpi/attr/attr_delete.c(8): ./src/include/mpir_thread.h(77): error: "MPIR_Per_thread_t" has already been declared in the current scope extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; ^ In file included from ./src/include/mpiimpl.h(214), from src/mpi/attr/attr_delete.c(8): ./src/include/mpir_thread.h(77): error: expected a ";" extern MPL_TLS MPIR_Per_thread_t MPIR_Per_thread; It seems that “none” is not a good value of this variable. Sincerely yours, Songchen Songchen Tan 10292504 College of Chemistry, University of California, Berkeley 97420, U. S. A. Email: tansongchen(a)berkeley.edu Cell: (+86)13501382788 在 2020年1月28日 +0800 10:31，Raffenetti, Kenneth J. via discuss <discuss(a)mpich.org>，写道： > We identified this as an Intel compiler issue and added a workaround in > https://github.com/pmodels/mpich/commit/59fd76de45bb4c5bfeff08883c4a3799052… > to address it, but your report indicates it is still an issue. > Unfortunately I do not have access to Intel compilers for macOS at the > moment to test another fix. > > You can disable thread-local storage entirely in order to build with the > configure option below. Note this may have negative performance > implications for multi-threaded applications. > > ./configure pac_cv_tls=none [...] > > Ken > > On 1/27/20 3:48 PM, Songchen Tan via discuss wrote: > > Hi Ken, > > > > No problem, it is attached. > > > > By the way, I also tried again on macOS 10.14, it failed due to the same > > reason, so it is unlikely that the problem is related to macOS 10.15. > > > > Sincerely yours, > > Songchen > > > > Songchen Tan 10292504 > > College of Chemistry, University of California, Berkeley 97420, U. S. A. > > Email: tansongchen(a)berkeley.edu > > Cell: (+86)13501382788 > > 在 2020年1月28日 +0800 03:57，Raffenetti, Kenneth J. via discuss > > <discuss(a)mpich.org>，写道： > > > Can you also send along src/mpl/config.log from your build directory? > > > > > > Ken > > > > > > On 1/27/20 11:57 AM, Songchen Tan via discuss wrote: > > > > Dear Developers, > > > > > > > > I am Songchen Tan at UC Berkeley, recently I am trying to use MPICH on > > > > macOS 10.15. Though binaries via homebrew is available, I would like to > > > > build from source in order to configure it with Intel compilers (icc, > > > > icpc and ifort). > > > > > > > > To reproduce the problem: > > > > > > > > 1. Download the source in ~/Applications/; > > > > 2. Unzip with `tar -xvzf mpich-3.3.2.tar.gz`, then `cd mpich-3.3.2`; > > > > 3. Run `./configure --prefix=/usr/local/Cellar/mpich/3.3.2 CC=icc > > > > CXX=icpc F77=ifort FC=ifort 2>&1 | tee c.txt`; > > > > 4. Build with `make VERBOSE=1 2>&1 | tee m.txt`. > > > > 5. Then I am noticed: `Undefined symbols for architecture > > > > x86_64: “__ZTHMPIR_Per_thread”`. > > > > > > > > > > > > The generated `c.txt` and `m.txt` is attached. Thank you so much for > > > > your help. > > > > > > > > Sincerely yours, > > > > Songchen > > > > > > > > Songchen Tan 10292504 > > > > College of Chemistry, University of California, Berkeley 97420, U. S. A. > > > > Email: tansongchen(a)berkeley.edu > > > > Cell: (+86)13501382788 > > > > > > > > _______________________________________________ > > > > discuss mailing list discuss(a)mpich.org > > > > To manage subscription options or unsubscribe: > > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > > > > _______________________________________________ > > > discuss mailing list discuss(a)mpich.org > > > To manage subscription options or unsubscribe: > > > https://lists.mpich.org/mailman/listinfo/discuss > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] MPICH 3.3.2 Unable to Build on macOS 10.15
by Raffenetti, Kenneth J. 27 Jan '20

27 Jan '20

We identified this as an Intel compiler issue and added a workaround in https://github.com/pmodels/mpich/commit/59fd76de45bb4c5bfeff08883c4a3799052… to address it, but your report indicates it is still an issue. Unfortunately I do not have access to Intel compilers for macOS at the moment to test another fix. You can disable thread-local storage entirely in order to build with the configure option below. Note this may have negative performance implications for multi-threaded applications. ./configure pac_cv_tls=none [...] Ken On 1/27/20 3:48 PM, Songchen Tan via discuss wrote: > Hi Ken, > > No problem, it is attached. > > By the way, I also tried again on macOS 10.14, it failed due to the same > reason, so it is unlikely that the problem is related to macOS 10.15. > > Sincerely yours, > Songchen > > Songchen Tan 10292504 > College of Chemistry, University of California, Berkeley 97420, U. S. A. > Email: tansongchen(a)berkeley.edu > Cell: (+86)13501382788 > 在 2020年1月28日 +0800 03:57，Raffenetti, Kenneth J. via discuss > <discuss(a)mpich.org>，写道： >> Can you also send along src/mpl/config.log from your build directory? >> >> Ken >> >> On 1/27/20 11:57 AM, Songchen Tan via discuss wrote: >>> Dear Developers, >>> >>> I am Songchen Tan at UC Berkeley, recently I am trying to use MPICH on >>> macOS 10.15. Though binaries via homebrew is available, I would like to >>> build from source in order to configure it with Intel compilers (icc, >>> icpc and ifort). >>> >>> To reproduce the problem: >>> >>> 1. Download the source in ~/Applications/; >>> 2. Unzip with `tar -xvzf mpich-3.3.2.tar.gz`, then `cd mpich-3.3.2`; >>> 3. Run `./configure --prefix=/usr/local/Cellar/mpich/3.3.2 CC=icc >>> CXX=icpc F77=ifort FC=ifort 2>&1 | tee c.txt`; >>> 4. Build with `make VERBOSE=1 2>&1 | tee m.txt`. >>> 5. Then I am noticed: `Undefined symbols for architecture >>> x86_64: “__ZTHMPIR_Per_thread”`. >>> >>> >>> The generated `c.txt` and `m.txt` is attached. Thank you so much for >>> your help. >>> >>> Sincerely yours, >>> Songchen >>> >>> Songchen Tan 10292504 >>> College of Chemistry, University of California, Berkeley 97420, U. S. A. >>> Email: tansongchen(a)berkeley.edu >>> Cell: (+86)13501382788 >>> >>> _______________________________________________ >>> discuss mailing list discuss(a)mpich.org >>> To manage subscription options or unsubscribe: >>> https://lists.mpich.org/mailman/listinfo/discuss >>> >> _______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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Re: [mpich-discuss] MPICH 3.3.2 Unable to Build on macOS 10.15
by Songchen Tan 27 Jan '20

27 Jan '20

Hi Ken, No problem, it is attached. By the way, I also tried again on macOS 10.14, it failed due to the same reason, so it is unlikely that the problem is related to macOS 10.15. Sincerely yours, Songchen Songchen Tan 10292504 College of Chemistry, University of California, Berkeley 97420, U. S. A. Email: tansongchen(a)berkeley.edu Cell: (+86)13501382788 在 2020年1月28日 +0800 03:57，Raffenetti, Kenneth J. via discuss <discuss(a)mpich.org>，写道： > Can you also send along src/mpl/config.log from your build directory? > > Ken > > On 1/27/20 11:57 AM, Songchen Tan via discuss wrote: > > Dear Developers, > > > > I am Songchen Tan at UC Berkeley, recently I am trying to use MPICH on > > macOS 10.15. Though binaries via homebrew is available, I would like to > > build from source in order to configure it with Intel compilers (icc, > > icpc and ifort). > > > > To reproduce the problem: > > > > 1. Download the source in ~/Applications/; > > 2. Unzip with `tar -xvzf mpich-3.3.2.tar.gz`, then `cd mpich-3.3.2`; > > 3. Run `./configure --prefix=/usr/local/Cellar/mpich/3.3.2 CC=icc > > CXX=icpc F77=ifort FC=ifort 2>&1 | tee c.txt`; > > 4. Build with `make VERBOSE=1 2>&1 | tee m.txt`. > > 5. Then I am noticed: `Undefined symbols for architecture > > x86_64: “__ZTHMPIR_Per_thread”`. > > > > > > The generated `c.txt` and `m.txt` is attached. Thank you so much for > > your help. > > > > Sincerely yours, > > Songchen > > > > Songchen Tan 10292504 > > College of Chemistry, University of California, Berkeley 97420, U. S. A. > > Email: tansongchen(a)berkeley.edu > > Cell: (+86)13501382788 > > > > _______________________________________________ > > discuss mailing list discuss(a)mpich.org > > To manage subscription options or unsubscribe: > > https://lists.mpich.org/mailman/listinfo/discuss > > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] MPICH 3.3.2 Unable to Build on macOS 10.15
by Raffenetti, Kenneth J. 27 Jan '20

27 Jan '20

Can you also send along src/mpl/config.log from your build directory? Ken On 1/27/20 11:57 AM, Songchen Tan via discuss wrote: > Dear Developers, > > I am Songchen Tan at UC Berkeley, recently I am trying to use MPICH on > macOS 10.15. Though binaries via homebrew is available, I would like to > build from source in order to configure it with Intel compilers (icc, > icpc and ifort). > > To reproduce the problem: > > 1. Download the source in ~/Applications/; > 2. Unzip with `tar -xvzf mpich-3.3.2.tar.gz`, then `cd mpich-3.3.2`; > 3. Run `./configure --prefix=/usr/local/Cellar/mpich/3.3.2 CC=icc > CXX=icpc F77=ifort FC=ifort 2>&1 | tee c.txt`; > 4. Build with `make VERBOSE=1 2>&1 | tee m.txt`. > 5. Then I am noticed: `Undefined symbols for architecture > x86_64: “__ZTHMPIR_Per_thread”`. > > > The generated `c.txt` and `m.txt` is attached. Thank you so much for > your help. > > Sincerely yours, > Songchen > > Songchen Tan 10292504 > College of Chemistry, University of California, Berkeley 97420, U. S. A. > Email: tansongchen(a)berkeley.edu > Cell: (+86)13501382788 > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss >

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MPICH 3.3.2 Unable to Build on macOS 10.15
by Songchen Tan 27 Jan '20

27 Jan '20

Dear Developers, I am Songchen Tan at UC Berkeley, recently I am trying to use MPICH on macOS 10.15. Though binaries via homebrew is available, I would like to build from source in order to configure it with Intel compilers (icc, icpc and ifort). To reproduce the problem: 1. Download the source in ~/Applications/; 2. Unzip with `tar -xvzf mpich-3.3.2.tar.gz`, then `cd mpich-3.3.2`; 3. Run `./configure --prefix=/usr/local/Cellar/mpich/3.3.2 CC=icc CXX=icpc F77=ifort FC=ifort 2>&1 | tee c.txt`; 4. Build with `make VERBOSE=1 2>&1 | tee m.txt`. 5. Then I am noticed: `Undefined symbols for architecture x86_64: “__ZTHMPIR_Per_thread”`. The generated `c.txt` and `m.txt` is attached. Thank you so much for your help. Sincerely yours, Songchen Songchen Tan 10292504 College of Chemistry, University of California, Berkeley 97420, U. S. A. Email: tansongchen(a)berkeley.edu Cell: (+86)13501382788

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MPICH 3.3.2 Unable to Build on macOS 10.15
by Songchen Tan 27 Jan '20

27 Jan '20

Dear Developers, I am Songchen Tan at UC Berkeley, recently I am trying to use MPICH on macOS 10.15. Though binaries via homebrew is available, I would like to build from source in order to configure it with Intel compilers (icc, icpc and ifort). To reproduce the problem: 1. Download the source in ~/Applications/; 2. Unzip with `tar -xvzf mpich-3.3.2.tar.gz`, then `cd mpich-3.3.2`; 3. Run `./configure --prefix=/usr/local/Cellar/mpich/3.3.2 CC=icc CXX=icpc F77=ifort FC=ifort 2>&1 | tee c.txt`; 4. Build with `make VERBOSE=1 2>&1 | tee m.txt`. 5. Then I am noticed: `Undefined symbols for architecture x86_64: “__ZTHMPIR_Per_thread”`. The generated `c.txt` and `m.txt` is attached. Thank you so much for your help. Sincerely yours, Songchen Songchen Tan 10292504 College of Chemistry, University of California, Berkeley 97420, U. S. A. Email: tansongchen(a)berkeley.edu Cell: (+86)13501382788

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