July 2014 - discuss - mailman3.cels.anl.gov

Re: [mpich-discuss] Problems in building MPICH (Installation)
by Bland, Wesley B. 30 Jul '14

30 Jul '14

Unfortunately, we haven't supported Windows since MPICH version 1.4.1p1. You can find out more at the FAQ page: http://wiki.mpich.org/mpich/index.php/Frequently_Asked_Questions#Q:_Why_can… Thanks, Wesley On Jul 30, 2014, at 4:11 PM, Low, Thaddeus Song En <low.98(a)buckeyemail.osu.edu<mailto:[email protected]>> wrote: From: Low, Thaddeus Song En Sent: Wednesday, July 30, 2014 5:03 PM To: 'discuss(a)mpich.org<mailto:[email protected]>' Subject: Problems in building MPICH (Installation) Hello, I have been having quite some trouble with the building of MPICH. Whenever it comes to the step of configuring openPA, the configure process fails, and the building process terminates right there. I have been looking at the config.log in openPA, and have found some errors, but I cannot make sense of these errors. Pardon me, I am unable to provide a direct finger to these problems, and would have to refer to the attached config.log from the openPA folder. Some info which might help. I am attempting to build this on a Windows machine via Cygwin64. Source location: Downloads Folder Build location: Documents Folder Installation Folder: C drive General description of errors mentioned: i) Unrecognized command line options ‘-V’ and ‘-qinversion’ ii) Configure: gcc –DNDEBUG –DNVALGRIND --> It couldn’t find the directories specified iii) Error: C compiler cannot create executables Thanks, Thad _______________________________________________ discuss mailing list discuss(a)mpich.org<mailto:[email protected]> To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] Problems in building MPICH (Installation)
by Low, Thaddeus Song En 30 Jul '14

30 Jul '14

From: Low, Thaddeus Song En Sent: Wednesday, July 30, 2014 5:03 PM To: 'discuss(a)mpich.org' Subject: Problems in building MPICH (Installation) Hello, I have been having quite some trouble with the building of MPICH. Whenever it comes to the step of configuring openPA, the configure process fails, and the building process terminates right there. I have been looking at the config.log in openPA, and have found some errors, but I cannot make sense of these errors. Pardon me, I am unable to provide a direct finger to these problems, and would have to refer to the attached config.log from the openPA folder. Some info which might help. I am attempting to build this on a Windows machine via Cygwin64. Source location: Downloads Folder Build location: Documents Folder Installation Folder: C drive General description of errors mentioned: i) Unrecognized command line options '-V' and '-qinversion' ii) Configure: gcc -DNDEBUG -DNVALGRIND --> It couldn't find the directories specified iii) Error: C compiler cannot create executables Thanks, Thad

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Re: [mpich-discuss] MPI_Get error with multiple threads on two nodes
by Seo, Sangmin 30 Jul '14

30 Jul '14

Thanks, Xin. I have created a ticket for this. Sangmin On Jul 30, 2014, at 11:10 AM, "Zhao, Xin" <xinzhao3(a)illinois.edu<mailto:[email protected]>> wrote: Hi all, I looked through Sangmin's attached code and I think it is correct. If it does not work with current mpich RMA code, we should create a ticket for it now. When we replace the current code with the new RMA code, we should run this test again at that time. Xin ________________________________ From: Seo, Sangmin [sseo(a)anl.gov<mailto:[email protected]>] Sent: Wednesday, July 30, 2014 10:50 AM To: Zhao, Xin Subject: Fwd: [mpich-discuss] MPI_Get error with multiple threads on two nodes FYI, Begin forwarded message: From: Rob Latham <robl(a)mcs.anl.gov<mailto:[email protected]>> Subject: Re: [mpich-discuss] MPI_Get error with multiple threads on two nodes Date: July 30, 2014 at 10:12:38 AM CDT To: <discuss(a)mpich.org<mailto:[email protected]>> Reply-To: <discuss(a)mpich.org<mailto:[email protected]>> On 07/28/2014 09:28 AM, Balaji, Pavan wrote: It seems to work fine with the mpich-dev/new-op-rma branch, which will replace the mpich/master code soon. To be clear, it replaces mpich/master code *only for ch3* I haven’t tested it with mpich/master. Can confirm the RMA code Sangmin sent blows up on Blue Gene, but in a different way: *** glibc detected *** /gpfs/mira-home/robl/src/rma_get_pthread/./rma_get_pthread: free(): corrupted unsorted chunks: 0x0000001e8349b560 *** Sangmin's original question remains unanswered: is the test correct? new-op-rma seems to think so, but old ch3 and pamid do not. ==rob -- Rob Latham Mathematics and Computer Science Division Argonne National Lab, IL USA _______________________________________________ discuss mailing list discuss(a)mpich.org<mailto:[email protected]> To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss _______________________________________________ discuss mailing list discuss(a)mpich.org<mailto:[email protected]> To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] MPI_Get error with multiple threads on two nodes
by Zhao, Xin 30 Jul '14

30 Jul '14

Hi all, I looked through Sangmin's attached code and I think it is correct. If it does not work with current mpich RMA code, we should create a ticket for it now. When we replace the current code with the new RMA code, we should run this test again at that time. Xin ________________________________ From: Seo, Sangmin [sseo(a)anl.gov] Sent: Wednesday, July 30, 2014 10:50 AM To: Zhao, Xin Subject: Fwd: [mpich-discuss] MPI_Get error with multiple threads on two nodes FYI, Begin forwarded message: From: Rob Latham <robl(a)mcs.anl.gov<mailto:[email protected]>> Subject: Re: [mpich-discuss] MPI_Get error with multiple threads on two nodes Date: July 30, 2014 at 10:12:38 AM CDT To: <discuss(a)mpich.org<mailto:[email protected]>> Reply-To: <discuss(a)mpich.org<mailto:[email protected]>> On 07/28/2014 09:28 AM, Balaji, Pavan wrote: It seems to work fine with the mpich-dev/new-op-rma branch, which will replace the mpich/master code soon. To be clear, it replaces mpich/master code *only for ch3* I haven’t tested it with mpich/master. Can confirm the RMA code Sangmin sent blows up on Blue Gene, but in a different way: *** glibc detected *** /gpfs/mira-home/robl/src/rma_get_pthread/./rma_get_pthread: free(): corrupted unsorted chunks: 0x0000001e8349b560 *** Sangmin's original question remains unanswered: is the test correct? new-op-rma seems to think so, but old ch3 and pamid do not. ==rob -- Rob Latham Mathematics and Computer Science Division Argonne National Lab, IL USA _______________________________________________ discuss mailing list discuss(a)mpich.org<mailto:[email protected]> To manage subscription options or unsubscribe: https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] MPI_Get error with multiple threads on two nodes
by Rob Latham 30 Jul '14

30 Jul '14

On 07/28/2014 09:28 AM, Balaji, Pavan wrote: > > It seems to work fine with the mpich-dev/new-op-rma branch, which will replace the mpich/master code soon. To be clear, it replaces mpich/master code *only for ch3* > I haven’t tested it with mpich/master. Can confirm the RMA code Sangmin sent blows up on Blue Gene, but in a different way: *** glibc detected *** /gpfs/mira-home/robl/src/rma_get_pthread/./rma_get_pthread: free(): corrupted unsorted chunks: 0x0000001e8349b560 *** Sangmin's original question remains unanswered: is the test correct? new-op-rma seems to think so, but old ch3 and pamid do not. ==rob -- Rob Latham Mathematics and Computer Science Division Argonne National Lab, IL USA

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Re: [mpich-discuss] MPI_Get error with multiple threads on two nodes
by Seo, Sangmin 29 Jul '14

29 Jul '14

Yes. It’s working well with the mpich-dev/new-op-rma branch. Thanks, Sangmin On Jul 28, 2014, at 9:28 AM, Balaji, Pavan <balaji(a)anl.gov> wrote: > > It seems to work fine with the mpich-dev/new-op-rma branch, which will replace the mpich/master code soon. > > I haven’t tested it with mpich/master. > > — Pavan > > On Jul 27, 2014, at 3:03 PM, Seo, Sangmin <sseo(a)anl.gov> wrote: > >> Hi all, >> >> I encountered the following error when I run the attached MPI RMA code (simplified to reproduce the error) with two nodes. The code works well on a single node (with multiple processes and multiple threads), and had no problem with a single thread per process on two nodes. I used the current MPICH master branch, built it with default configure options, and executed on a linux cluster (MCS Breadboard node 70 and 71, Ubuntu 12.04.4, gcc 4.6.3). >> >> $ mpiexec -f hosts_pthread -n 2 ./rma_get_pthread 4 >> num_threads: 4 >> Assertion failed in file src/mpid/ch3/src/ch3u_rma_sync.c at line 5979: MPIU_Object_get_ref(((curr_ptr->request))) >= 0 >> internal ABORT - process 1 >> >> =================================================================================== >> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES >> = PID 22979 RUNNING AT bb71 >> = EXIT CODE: 1 >> = CLEANING UP REMAINING PROCESSES >> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES >> =================================================================================== >> [proxy:0:0@bb70] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed >> [proxy:0:0@bb70] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status >> [proxy:0:0@bb70] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event >> [mpiexec@bb70] HYDT_bscu_wait_for_completion (tools/bootstrap/utils/bscu_wait.c:76): one of the processes terminated badly; aborting >> [mpiexec@bb70] HYDT_bsci_wait_for_completion (tools/bootstrap/src/bsci_wait.c:23): launcher returned error waiting for completion >> [mpiexec@bb70] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:218): launcher returned error waiting for completion >> [mpiexec@bb70] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion >> >> >> Could someone take a look at it and tell me what I did wrong or whether it is a bug in MPICH? >> >> Thank you, >> Sangmin >> >> >> >> <rma_get_pthread.c>_______________________________________________ >> discuss mailing list discuss(a)mpich.org >> To manage subscription options or unsubscribe: >> https://lists.mpich.org/mailman/listinfo/discuss > > -- > Pavan Balaji ✉️ > http://www.mcs.anl.gov/~balaji > > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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Re: [mpich-discuss] MPI_Get error with multiple threads on two nodes
by Balaji, Pavan 28 Jul '14

28 Jul '14

It seems to work fine with the mpich-dev/new-op-rma branch, which will replace the mpich/master code soon. I haven’t tested it with mpich/master. — Pavan On Jul 27, 2014, at 3:03 PM, Seo, Sangmin <sseo(a)anl.gov> wrote: > Hi all, > > I encountered the following error when I run the attached MPI RMA code (simplified to reproduce the error) with two nodes. The code works well on a single node (with multiple processes and multiple threads), and had no problem with a single thread per process on two nodes. I used the current MPICH master branch, built it with default configure options, and executed on a linux cluster (MCS Breadboard node 70 and 71, Ubuntu 12.04.4, gcc 4.6.3). > > $ mpiexec -f hosts_pthread -n 2 ./rma_get_pthread 4 > num_threads: 4 > Assertion failed in file src/mpid/ch3/src/ch3u_rma_sync.c at line 5979: MPIU_Object_get_ref(((curr_ptr->request))) >= 0 > internal ABORT - process 1 > > =================================================================================== > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > = PID 22979 RUNNING AT bb71 > = EXIT CODE: 1 > = CLEANING UP REMAINING PROCESSES > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > =================================================================================== > [proxy:0:0@bb70] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed > [proxy:0:0@bb70] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status > [proxy:0:0@bb70] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event > [mpiexec@bb70] HYDT_bscu_wait_for_completion (tools/bootstrap/utils/bscu_wait.c:76): one of the processes terminated badly; aborting > [mpiexec@bb70] HYDT_bsci_wait_for_completion (tools/bootstrap/src/bsci_wait.c:23): launcher returned error waiting for completion > [mpiexec@bb70] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:218): launcher returned error waiting for completion > [mpiexec@bb70] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion > > > Could someone take a look at it and tell me what I did wrong or whether it is a bug in MPICH? > > Thank you, > Sangmin > > > > <rma_get_pthread.c>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss -- Pavan Balaji ✉️ http://www.mcs.anl.gov/~balaji

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Re: [mpich-discuss] MPI_Get error with multiple threads on two nodes
by Rajeev Thakur 28 Jul '14

28 Jul '14

Probably a bug. Can you create a ticket for it. Rajeev On Jul 27, 2014, at 3:03 PM, "Seo, Sangmin" <sseo(a)anl.gov> wrote: > Hi all, > > I encountered the following error when I run the attached MPI RMA code (simplified to reproduce the error) with two nodes. The code works well on a single node (with multiple processes and multiple threads), and had no problem with a single thread per process on two nodes. I used the current MPICH master branch, built it with default configure options, and executed on a linux cluster (MCS Breadboard node 70 and 71, Ubuntu 12.04.4, gcc 4.6.3). > > $ mpiexec -f hosts_pthread -n 2 ./rma_get_pthread 4 > num_threads: 4 > Assertion failed in file src/mpid/ch3/src/ch3u_rma_sync.c at line 5979: MPIU_Object_get_ref(((curr_ptr->request))) >= 0 > internal ABORT - process 1 > > =================================================================================== > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES > = PID 22979 RUNNING AT bb71 > = EXIT CODE: 1 > = CLEANING UP REMAINING PROCESSES > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES > =================================================================================== > [proxy:0:0@bb70] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed > [proxy:0:0@bb70] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status > [proxy:0:0@bb70] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event > [mpiexec@bb70] HYDT_bscu_wait_for_completion (tools/bootstrap/utils/bscu_wait.c:76): one of the processes terminated badly; aborting > [mpiexec@bb70] HYDT_bsci_wait_for_completion (tools/bootstrap/src/bsci_wait.c:23): launcher returned error waiting for completion > [mpiexec@bb70] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:218): launcher returned error waiting for completion > [mpiexec@bb70] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion > > > Could someone take a look at it and tell me what I did wrong or whether it is a bug in MPICH? > > Thank you, > Sangmin > > > > <rma_get_pthread.c>_______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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MPI_Get error with multiple threads on two nodes
by Seo, Sangmin 27 Jul '14

27 Jul '14

Hi all, I encountered the following error when I run the attached MPI RMA code (simplified to reproduce the error) with two nodes. The code works well on a single node (with multiple processes and multiple threads), and had no problem with a single thread per process on two nodes. I used the current MPICH master branch, built it with default configure options, and executed on a linux cluster (MCS Breadboard node 70 and 71, Ubuntu 12.04.4, gcc 4.6.3). $ mpiexec -f hosts_pthread -n 2 ./rma_get_pthread 4 num_threads: 4 Assertion failed in file src/mpid/ch3/src/ch3u_rma_sync.c at line 5979: MPIU_Object_get_ref(((curr_ptr->request))) >= 0 internal ABORT - process 1 =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 22979 RUNNING AT bb71 = EXIT CODE: 1 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== [proxy:0:0@bb70] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed [proxy:0:0@bb70] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [proxy:0:0@bb70] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event [mpiexec@bb70] HYDT_bscu_wait_for_completion (tools/bootstrap/utils/bscu_wait.c:76): one of the processes terminated badly; aborting [mpiexec@bb70] HYDT_bsci_wait_for_completion (tools/bootstrap/src/bsci_wait.c:23): launcher returned error waiting for completion [mpiexec@bb70] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:218): launcher returned error waiting for completion [mpiexec@bb70] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion Could someone take a look at it and tell me what I did wrong or whether it is a bug in MPICH? Thank you, Sangmin

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Re: [mpich-discuss] MPI with gfortran under Windows
by Bland, Wesley B. 27 Jul '14

27 Jul '14

Hi Mohammad, I'm sorry, but we don't support Windows anymore. It may be possible to run F90 programs there but it's untested. If it turns out that old versions of MPICH don't provide what you need, you can try MS-MPI from Microsoft or Intel MPI. Both of those are supported on Windows. Thanks, Wesley > On Jul 27, 2014, at 11:56 AM, "Mohammad Yazdandoost" <moyazdandoost(a)gmail.com> wrote: > > Hallo MPICH-Team ! > > I have installed mpich2-1.4.1p1-win-ia32 for Windows 7. Now I wanted to run an MPI Fortran 90 program in eclipse. Is it possible at all ? > Thanks you for your help. > > M. Yazdandoost > _______________________________________________ > discuss mailing list discuss(a)mpich.org > To manage subscription options or unsubscribe: > https://lists.mpich.org/mailman/listinfo/discuss

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